Experiment set5IT021 for Pseudomonas fluorescens FW300-N2E3

Compare to:

L-Tryptophan nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
AO353_21830 +1.7 14.8 chemotaxis protein CheY compare
AO353_02735 +1.6 14.6 chemotaxis protein CheY compare
AO353_24260 +1.2 2.3 hypothetical protein compare
AO353_09720 +1.2 3.1 hypothetical protein compare
AO353_26525 +1.1 3.9 hypothetical protein compare
AO353_03290 +1.0 2.9 peptide deformylase compare
AO353_11185 +1.0 8.5 channel protein TolC compare
AO353_11190 +1.0 8.0 ABC transporter compare
AO353_19340 +0.9 8.2 amino acid ABC transporter substrate-binding protein compare
AO353_00185 +0.9 2.7 phage tail protein compare
AO353_23410 +0.9 2.8 hypothetical protein compare
AO353_15825 +0.9 2.5 serine acetyltransferase compare
AO353_11195 +0.9 7.6 hemolysin secretion protein D compare
AO353_17945 +0.9 2.0 cyclic nucleotide-binding protein compare
AO353_11180 +0.8 7.8 large adhesive protein compare
AO353_14485 +0.8 1.7 pseudouridine synthase compare
AO353_11170 +0.8 6.3 hypothetical protein compare
AO353_09250 +0.8 2.4 exodeoxyribonuclease III compare
AO353_07610 +0.8 1.1 hypothetical protein compare
AO353_21935 +0.8 1.9 nitrite reductase compare
AO353_09660 +0.8 1.7 hypothetical protein compare
AO353_12720 +0.8 3.2 hypothetical protein compare
AO353_26390 +0.8 2.0 glyoxalase compare
AO353_05625 +0.7 1.5 transcription elongation factor GreA compare
AO353_20800 +0.7 1.0 hypothetical protein compare
AO353_04090 +0.7 2.5 leucyl-tRNA synthetase compare
AO353_23015 +0.7 3.3 histidine kinase compare
AO353_23785 +0.7 1.9 hypothetical protein compare
AO353_13985 +0.7 2.4 pilus assembly protein compare
AO353_22600 +0.7 2.1 hypothetical protein compare
AO353_09915 +0.7 4.1 long-chain acyl-CoA thioester hydrolase compare
AO353_27435 +0.6 1.9 hypothetical protein compare
AO353_11155 +0.6 5.5 thioesterase compare
AO353_29280 +0.6 1.7 hypothetical protein compare
AO353_18560 +0.6 1.6 class I peptide chain release factor compare
AO353_23590 +0.6 1.7 ArsR family transcriptional regulator compare
AO353_14915 +0.6 1.8 (2Fe-2S)-binding protein compare
AO353_02300 +0.6 1.7 MarR family transcriptional regulator compare
AO353_20265 +0.6 1.4 spore coat protein compare
AO353_25820 +0.6 2.8 hypothetical protein compare
AO353_20495 +0.6 1.7 NUDIX hydrolase compare
AO353_11945 +0.6 0.8 4-oxalocrotonate tautomerase compare
AO353_09775 +0.6 2.6 hypothetical protein compare
AO353_17965 +0.6 3.2 hypothetical protein compare
AO353_09945 +0.6 2.7 LysR family transcriptional regulator compare
AO353_16345 +0.6 2.0 energy transducer TonB compare
AO353_02465 +0.6 1.9 hypothetical protein compare
AO353_27500 +0.6 1.3 hypothetical protein compare
AO353_24120 +0.6 1.2 hypothetical protein compare
AO353_04810 +0.6 0.9 hypothetical protein compare
AO353_00250 +0.6 2.5 hypothetical protein compare
AO353_06320 +0.6 2.6 AsnC family transcriptional regulator compare
AO353_09690 +0.6 2.3 hypothetical protein compare
AO353_03310 +0.6 4.2 long-chain fatty acid--CoA ligase compare
AO353_12935 +0.6 2.4 glycosyltransferase compare
AO353_12540 +0.6 1.7 hypothetical protein compare
AO353_22195 +0.6 1.0 metal ABC transporter permease compare
AO353_19335 +0.6 4.1 TetR family transcriptional regulator compare
AO353_09460 +0.6 1.9 hypothetical protein compare
AO353_29340 +0.5 1.5 transporter compare
AO353_20910 +0.5 2.9 MerR family transcriptional regulator compare
AO353_02060 +0.5 1.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
AO353_01220 +0.5 1.3 hypothetical protein compare
AO353_07920 +0.5 2.2 hypothetical protein compare
AO353_10500 +0.5 1.8 acetylornithine aminotransferase compare
AO353_16355 +0.5 2.5 TetR family transcriptional regulator compare
AO353_27890 +0.5 3.0 RpiR family transcriptional regulator compare
AO353_05535 +0.5 0.7 tRNA-Thr compare
AO353_00325 +0.5 2.4 pilus assembly protein compare
AO353_06745 +0.5 1.3 zinc-binding protein compare
AO353_19070 +0.5 2.1 hypothetical protein compare
AO353_05125 +0.5 2.2 BolA family transcriptional regulator compare
AO353_13925 +0.5 1.2 XRE family transcriptional regulator compare
AO353_09885 +0.5 1.0 transcriptional regulator PhoU compare
AO353_12950 +0.5 3.4 polymerase compare
AO353_17850 +0.5 1.8 SAM-dependent methyltransferase compare
AO353_27380 +0.5 1.2 pyocin R2, holin compare
AO353_12575 +0.5 2.3 type II secretion system protein GspJ compare
AO353_03000 +0.5 2.1 topoisomerase II compare
AO353_02175 +0.5 1.6 carbon storage regulator compare
AO353_21990 +0.5 2.1 cytochrome C compare
AO353_15290 +0.5 3.0 methyltransferase compare
AO353_06170 +0.5 3.2 3-dehydroquinate dehydratase compare
AO353_14860 +0.5 1.8 hypoxanthine-guanine phosphoribosyltransferase compare
AO353_27525 +0.5 1.7 AraC family transcriptional regulator compare
AO353_23745 +0.5 2.1 acetylglucosaminylphosphatidylinositol deacetylase compare
AO353_12835 +0.5 1.6 hypothetical protein compare
AO353_21110 +0.5 1.0 hypothetical protein compare
AO353_21180 +0.5 2.1 transposase compare
AO353_27010 +0.5 1.7 alpha-ketoglutarate-dependent dioxygenase compare
AO353_18970 +0.5 1.8 hydrolase TatD compare
AO353_17985 +0.5 2.5 LysR family transcriptional regulator compare
AO353_28210 +0.5 1.5 2-haloalkanoic acid dehalogenase compare
AO353_19610 +0.5 2.0 hypothetical protein compare
AO353_22595 +0.5 2.1 hypothetical protein compare
AO353_04800 +0.5 1.9 short-chain dehydrogenase compare
AO353_12910 +0.5 1.9 hypothetical protein compare
AO353_13930 +0.5 2.1 Killer protein compare
AO353_06720 +0.5 1.3 NrdR family transcriptional regulator compare
AO353_02445 +0.5 2.5 diguanylate phosphodiesterase compare
AO353_06135 +0.5 1.6 NADPH:quinone reductase compare
AO353_23400 +0.5 1.4 hypothetical protein compare
AO353_03450 +0.4 1.8 heme oxygenase compare
AO353_07325 +0.4 1.0 diadenosine tetraphosphatase compare
AO353_03655 +0.4 1.8 cobalamin adenosyltransferase compare
AO353_27365 +0.4 1.6 hypothetical protein compare
AO353_12420 +0.4 1.7 predicted FeS cluster maintenance protein (from data) compare
AO353_25375 +0.4 2.3 cyclic pyranopterin phosphate synthase MoaA compare
AO353_06345 +0.4 4.1 histidine kinase compare
AO353_17110 +0.4 1.9 ABC transporter ATP-binding protein compare
AO353_28670 +0.4 1.7 hypothetical protein compare
AO353_14030 +0.4 3.4 ABC transporter ATP-binding protein compare
AO353_02335 +0.4 1.9 ureidoglycolate hydrolase compare
AO353_13660 +0.4 2.7 tRNA-dihydrouridine synthase B compare
AO353_07735 +0.4 2.0 AraC family transcriptional regulator compare
AO353_16040 +0.4 1.3 hypothetical protein compare
AO353_00570 +0.4 2.1 CAAX protease compare
AO353_10990 +0.4 2.7 glutamate:protein symporter compare
AO353_12930 +0.4 1.2 GlcNAc-PI de-N-acetylase compare
AO353_02470 +0.4 1.9 Cro/Cl family transcriptional regulator compare
AO353_10780 +0.4 0.6 DNA-binding protein compare
AO353_12210 +0.4 2.4 hypothetical protein compare
AO353_26590 +0.4 2.0 hypothetical protein compare
AO353_28070 +0.4 1.6 LysR family transcriptional regulator compare
AO353_12095 +0.4 2.7 amino acid ABC transporter substrate-binding protein compare
AO353_26835 +0.4 1.5 transcriptional regulator compare
AO353_06455 +0.4 0.8 D-alanyl-D-alanine carboxypeptidase compare
AO353_07875 +0.4 1.1 hypothetical protein compare
AO353_22915 +0.4 1.8 oxidoreductase compare
AO353_20480 +0.4 1.7 hypothetical protein compare
AO353_05280 +0.4 0.9 4-carboxymuconolactone decarboxylase compare
AO353_28340 +0.4 1.9 AAA family ATPase compare
AO353_02275 +0.4 2.1 hypothetical protein compare
AO353_00695 +0.4 2.9 diguanylate cyclase compare
AO353_06365 +0.4 3.3 hypothetical protein compare
AO353_08440 +0.4 1.3 hypothetical protein compare
AO353_03110 +0.4 1.8 hydrolase compare
AO353_21380 +0.4 2.2 rhizopine-binding protein compare
AO353_05510 +0.4 2.3 N-acetyl-anhydromuranmyl-L-alanine amidase compare
AO353_07200 +0.4 2.5 cyclic AMP receptor protein compare
AO353_27420 +0.4 1.7 DNA-binding protein compare
AO353_08375 +0.4 2.1 hypothetical protein compare
AO353_01015 +0.4 1.0 hypothetical protein compare
AO353_26450 +0.4 1.7 hypothetical protein compare
AO353_20845 +0.4 2.0 uridine/adenosine nucleosidase (EC 3.2.2.3; EC 3.2.2.7) (from data) compare
AO353_00070 +0.4 2.4 AraC family transcriptional regulator compare
AO353_25300 +0.4 1.8 LysR family transcriptional regulator compare
AO353_25575 +0.4 1.5 GNAT family acetyltransferase compare
AO353_02480 +0.4 2.7 peptidylprolyl isomerase compare
AO353_22735 +0.4 1.1 hypothetical protein compare
AO353_03965 +0.4 2.8 type IV secretion protein Rhs compare
AO353_22520 +0.4 1.1 hypothetical protein compare
AO353_01120 +0.4 2.9 GntR family transcriptional regulator compare
AO353_12790 +0.4 1.1 hypothetical protein compare
AO353_19435 +0.4 1.1 TetR family transcriptional regulator compare
AO353_25720 +0.4 1.4 peroxidase compare
AO353_13740 +0.4 1.6 MFS transporter compare
AO353_28315 +0.4 1.3 3-demethylubiquinone-9 3-methyltransferase compare
AO353_09315 +0.4 2.6 LysR family transcriptional regulator compare
AO353_20455 +0.4 1.5 HAD family hydrolase compare
AO353_13405 +0.4 1.1 urease accessory protein UreF compare
AO353_01415 +0.4 2.0 molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
AO353_25305 +0.4 1.4 malonate transporter compare
AO353_22675 +0.4 2.0 hypothetical protein compare
AO353_03140 +0.4 1.7 hypothetical protein compare
AO353_09790 +0.4 1.7 hypothetical protein compare
AO353_03440 +0.4 1.5 glycerol-3-phosphate ABC transporter substrate-binding protein compare
AO353_27905 +0.4 1.7 N-formylglutamate amidohydrolase compare
AO353_28830 +0.4 2.3 hypothetical protein compare
AO353_28385 +0.4 1.9 twitching motility protein PilT compare
AO353_05880 +0.4 1.0 plasmid stabilization protein compare
AO353_04065 +0.4 1.4 electron transporter RnfB compare
AO353_28925 +0.4 1.4 hypothetical protein compare
AO353_12315 +0.4 2.9 glucosyltransferase MdoH compare
AO353_25700 +0.4 0.6 hypothetical protein compare
AO353_00455 +0.3 1.4 beta-hexosaminidase compare
AO353_24175 +0.3 1.1 hypothetical protein compare
AO353_02580 +0.3 3.1 Long-chain fatty acid transport protein compare
AO353_09780 +0.3 2.0 hypothetical protein compare
AO353_23370 +0.3 1.3 cytochrome C compare
AO353_28330 +0.3 1.3 carbon-nitrogen hydrolase compare
AO353_15490 +0.3 0.6 hypothetical protein compare
AO353_05240 +0.3 0.7 rod shape-determining protein MreD compare
AO353_29365 +0.3 1.1 paraquat-inducible protein A compare
AO353_11420 +0.3 1.8 hypothetical protein compare
AO353_00725 +0.3 2.1 GntR family transcriptional regulator compare
AO353_13990 +0.3 1.9 carbon starvation protein A compare
AO353_22580 +0.3 1.2 3-demethylubiquinone-9 3-methyltransferase compare
AO353_05070 +0.3 1.7 acyltransferase compare
AO353_17025 +0.3 2.8 beta-agarase compare
AO353_13300 +0.3 0.6 LOG family protein compare
AO353_00670 +0.3 1.7 acyl-CoA dehydrogenase compare
AO353_21175 +0.3 1.0 hypothetical protein compare
AO353_15640 +0.3 0.9 acetylornithine aminotransferase compare
AO353_01690 +0.3 1.8 hypothetical protein compare
AO353_08875 +0.3 0.5 amino acid ABC transporter ATP-binding protein compare
AO353_18130 +0.3 1.0 hypothetical protein compare
AO353_17720 +0.3 1.7 ABC transporter substrate-binding protein compare
AO353_06725 +0.3 0.8 hypothetical protein compare
AO353_21395 +0.3 2.4 porin compare


Specific Phenotypes

For 12 genes in this experiment

For nitrogen source L-Tryptophan in Pseudomonas fluorescens FW300-N2E3

For nitrogen source L-Tryptophan across organisms