Experiment set5IT021 for Dechlorosoma suillum PS

Compare to:

ALP with Sodium nitrate 50 mM

200 most important genes:

  gene name fitness t score description  
Dsui_0743 -7.9 -10.4 phosphotransferase system HPr (HPr) family protein compare
Dsui_0742 -6.1 -12.9 phosphoenolpyruvate-protein phosphotransferase compare
Dsui_0423 -5.5 -9.2 putative permease compare
Dsui_1970 -5.2 -9.3 metalloendopeptidase-like membrane protein compare
Dsui_3139 -5.0 -3.4 outer membrane assembly lipoprotein YfgL compare
Dsui_2717 -4.8 -5.3 RNA polymerase-binding protein DksA compare
Dsui_2816 -4.8 -7.3 (p)ppGpp synthetase, RelA/SpoT family compare
Dsui_3392 -4.8 -15.9 carboxylate-amine ligase, YbdK family compare
Dsui_3393 -4.6 -11.1 Kef-type K+ transport system, membrane component compare
Dsui_0520 -3.8 -12.9 transcriptional regulator compare
Dsui_2651 -3.8 -2.0 ankyrin repeat-containing protein compare
Dsui_1978 -3.6 -3.8 putative lipoprotein compare
Dsui_3523 -3.6 -11.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain compare
Dsui_3524 -3.5 -13.0 signal transduction histidine kinase compare
Dsui_1529 -3.3 -8.6 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain compare
Dsui_1855 -3.2 -2.0 hypothetical protein compare
Dsui_1402 -3.1 -4.9 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Dsui_1000 -3.0 -2.1 hypothetical protein compare
Dsui_1401 -3.0 -9.3 surface lipoprotein compare
Dsui_1668 -3.0 -1.9 alpha-hydroxyacid dehydrogenase, FMN-dependent L-lactate dehydrogenase compare
Dsui_0487 -2.9 -1.8 hemerythrin HHE cation binding domain-containing protein compare
Dsui_0974 -2.9 -1.8 hypothetical protein compare
Dsui_3272 -2.9 -2.0 putative threonine efflux protein compare
Dsui_2033 -2.8 -1.9 transcriptional regulator compare
Dsui_2667 -2.8 -1.7 acetyltransferase compare
Dsui_3054 -2.8 -3.6 phosphate ABC transporter, permease protein PstA compare
Dsui_3171 -2.8 -1.7 putative protein-disulfide isomerase compare
Dsui_1398 -2.8 -8.2 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Dsui_0620 -2.7 -2.6 Fe2+-dicitrate sensor, membrane component compare
Dsui_3179 -2.7 -1.8 signal transduction histidine kinase compare
Dsui_3158 -2.7 -5.3 Na+/H+ dicarboxylate symporter compare
Dsui_0533 -2.7 -1.8 cobyrinic acid a,c-diamide synthase compare
Dsui_0870 -2.7 -11.6 putative membrane protein compare
Dsui_3457 -2.7 -2.0 K+ transporter compare
Dsui_3007 -2.7 -0.8 hydrogenase assembly chaperone HypC/HupF compare
Dsui_1620 -2.7 -1.7 PAP2 (acid phosphatase) superfamily protein compare
Dsui_0958 -2.7 -1.7 ferredoxin compare
Dsui_2032 -2.7 -1.8 PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein compare
Dsui_1851 -2.7 -1.8 signal transduction histidine kinase compare
Dsui_3527 -2.6 -0.8 ketol-acid reductoisomerase compare
Dsui_0792 -2.6 -2.5 hypothetical protein compare
Dsui_1165 -2.6 -1.7 Ni,Fe-hydrogenase I large subunit compare
Dsui_2969 -2.6 -1.8 uroporphyrin-III C-methyltransferase compare
Dsui_3456 -2.6 -1.7 hypothetical protein compare
Dsui_2424 -2.5 -0.8 hypothetical protein compare
Dsui_0865 -2.5 -1.7 hypothetical protein compare
Dsui_1821 -2.5 -2.1 esterase/lipase compare
Dsui_0200 -2.5 -1.5 hypothetical protein compare
Dsui_2342 -2.5 -2.3 multidrug resistance efflux pump compare
Dsui_2123 -2.4 -1.3 EAL domain-containing protein compare
Dsui_1242 -2.4 -1.6 hypothetical protein compare
Dsui_1576 -2.4 -3.0 dihydrolipoamide dehydrogenase compare
Dsui_1400 -2.4 -12.7 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Dsui_3352 -2.4 -1.6 cAMP-binding protein compare
Dsui_0558 -2.3 -1.6 tetratricopeptide repeat protein compare
Dsui_1674 -2.3 -1.6 EAL domain-containing protein compare
Dsui_1839 -2.3 -1.4 hypothetical protein compare
Dsui_1819 -2.3 -1.0 4-oxalocrotonate tautomerase family enzyme compare
Dsui_1818 -2.3 -4.8 anthranilate phosphoribosyltransferase compare
Dsui_0174 -2.3 -1.4 hypothetical protein compare
Dsui_1599 -2.3 -17.8 putative enzyme of heme biosynthesis compare
Dsui_3298 -2.3 -16.7 Kef-type K+ transport system, predicted NAD-binding component compare
Dsui_0553 -2.3 -1.4 putative nitrogen fixation protein compare
Dsui_3069 -2.3 -3.5 putative membrane protein compare
Dsui_1321 -2.3 -11.1 ABC-type uncharacterized transport system, permease component compare
Dsui_2518 -2.3 -1.5 hypothetical protein compare
Dsui_0418 -2.3 -1.6 putative Na+-dependent transporter compare
Dsui_0209 -2.3 -1.5 hypothetical protein compare
Dsui_1370 -2.3 -1.5 putative permease, DMT superfamily compare
Dsui_0968 -2.3 -1.9 deoxyinosine 3'endonuclease (endonuclease V) compare
Dsui_0401 -2.2 -2.3 nucleoside-diphosphate-sugar epimerase compare
Dsui_3274 -2.2 -1.5 dihydrodipicolinate reductase compare
Dsui_1702 -2.2 -1.3 TonB family protein compare
Dsui_2389 -2.2 -1.5 putative membrane protein compare
Dsui_3231 -2.2 -1.5 hypothetical protein compare
Dsui_0003 -2.2 -6.1 putative Zn-dependent protease compare
Dsui_0978 -2.2 -1.3 2-hydroxychromene-2-carboxylate isomerase compare
Dsui_1360 -2.2 -1.5 hypothetical protein compare
Dsui_0252 -2.2 -1.1 TIGR00252 family protein compare
Dsui_0431 -2.2 -2.5 putative permease, DMT superfamily compare
Dsui_3377 -2.2 -1.5 Uncharacterized protein conserved in bacteria (DUF2325) compare
Dsui_0297 -2.2 -2.1 sugar fermentation stimulation protein compare
Dsui_3118 -2.2 -1.5 polyferredoxin compare
Dsui_1852 -2.2 -1.3 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain compare
Dsui_2272 -2.2 -1.5 hypothetical protein compare
Dsui_2329 -2.1 -1.5 putative dehydrogenase compare
Dsui_3366 -2.1 -1.4 glycerophosphoryl diester phosphodiesterase compare
Dsui_0878 -2.1 -1.5 heme/copper-type cytochrome/quinol oxidase, subunit 3 compare
Dsui_1817 -2.1 -2.0 anaerobic dehydrogenase, typically selenocysteine-containing compare
Dsui_0412 -2.1 -1.4 ABC-type dipeptide/oligopeptide/nickel transport system, permease component compare
Dsui_1659 -2.1 -2.0 Uncharacterized protein conserved in bacteria (DUF2325) compare
Dsui_2740 -2.1 -1.8 putative integral membrane protein compare
Dsui_1669 -2.1 -1.3 trypsin-like serine protease with C-terminal PDZ domain compare
Dsui_3026 -2.1 -1.1 hydrogenase maturation protease compare
Dsui_0945 -2.1 -1.1 Iron-sulfur cluster assembly accessory protein compare
Dsui_1610 -2.1 -1.8 Protein of unknown function (DUF3079) compare
Dsui_1045 -2.1 -1.4 hypothetical protein compare
Dsui_0477 -2.1 -3.1 tol-pal system protein YbgF compare
Dsui_3465 -2.1 -1.4 signal transduction histidine kinase regulating C4-dicarboxylate transport system compare
Dsui_0734 -2.1 -1.1 acetyltransferase compare
Dsui_1149 -2.1 -1.4 Zn-dependent protease with chaperone function compare
Dsui_3077 -2.1 -1.4 hypothetical protein compare
Dsui_3448 -2.1 -1.4 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain compare
Dsui_1600 -2.1 -12.7 putative enzyme of heme biosynthesis compare
Dsui_0966 -2.1 -3.3 methyl-accepting chemotaxis protein compare
Dsui_3178 -2.1 -1.4 ABC-type antimicrobial peptide transport system, permease component compare
Dsui_0557 -2.0 -1.4 NifQ compare
Dsui_1670 -2.0 -1.4 cytochrome c peroxidase compare
Dsui_0393 -2.0 -1.4 glycosyltransferase compare
Dsui_2085 -2.0 -1.4 NADPH-dependent FMN reductase compare
Dsui_3008 -2.0 -1.4 hydrogenase expression/formation protein compare
Dsui_1160 -2.0 -1.3 hydrogenase assembly chaperone HypC/HupF compare
Dsui_1893 -2.0 -1.0 putative membrane protein compare
Dsui_3271 -2.0 -1.4 ATP-dependent protease Clp, ATPase subunit compare
Dsui_0838 -2.0 -3.0 hypothetical protein compare
Dsui_1615 -2.0 -1.0 hypothetical protein compare
Dsui_1132 -2.0 -1.4 hypothetical protein compare
Dsui_3006 -2.0 -0.9 (NiFe) hydrogenase assembly chaperone, HybE family compare
Dsui_1577 -2.0 -2.5 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form compare
Dsui_3278 -2.0 -3.0 molybdenum cofactor biosynthesis protein A compare
Dsui_1396 -2.0 -1.9 type II secretory pathway, component ExeA (predicted ATPase) compare
Dsui_1992 -2.0 -3.3 ribosomal protein L9 compare
Dsui_0513 -2.0 -3.2 diguanylate cyclase (GGDEF) domain-containing protein compare
Dsui_1879 -2.0 -1.4 luciferase family oxidoreductase, group 1 compare
Dsui_1974 -2.0 -1.3 hypothetical protein compare
Dsui_1456 -2.0 -1.4 HD-GYP domain-containing protein compare
Dsui_1403 -2.0 -2.6 putative NTP binding protein (contains STAS domain) compare
Dsui_3351 -2.0 -1.3 cytochrome c peroxidase compare
Dsui_1619 -2.0 -1.3 putative membrane-associated, metal-dependent hydrolase compare
Dsui_3330 -2.0 -1.0 hypothetical protein compare
Dsui_3125 -2.0 -1.4 cytochrome c, mono- and diheme variants family compare
Dsui_0871 -2.0 -0.6 hypothetical protein compare
Dsui_1833 -2.0 -1.3 nitrate transport ATP-binding subunits C and D compare
Dsui_1388 -2.0 -1.3 hypothetical protein compare
Dsui_1739 -2.0 -1.3 flagellar basal-body P-ring protein compare
Dsui_1442 -2.0 -1.3 putative efflux protein, MATE family compare
Dsui_2772 -1.9 -1.2 uncharacterized protein, possibly involved in aromatic compounds catabolism compare
Dsui_3426 -1.9 -1.8 transcriptional regulator compare
Dsui_3126 -1.9 -1.3 heme d1 biosynthesis radical SAM protein NirJ compare
Dsui_2868 -1.9 -1.8 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain protein compare
Dsui_1530 -1.9 -1.0 hypothetical protein compare
Dsui_2341 -1.9 -1.3 ABC-type multidrug transport system, ATPase component compare
Dsui_1399 -1.9 -8.8 conserved hypothetical integral membrane protein compare
Dsui_0940 -1.9 -1.3 Nif-specific regulatory protein compare
Dsui_0653 -1.9 -2.2 putative SAM-dependent methyltransferase compare
Dsui_1888 -1.9 -1.2 putative domain HDIG-containing protein compare
Dsui_3109 -1.9 -1.3 cytochrome c, mono- and diheme variants family compare
Dsui_2895 -1.9 -2.1 ABC-type uncharacterized transport system, periplasmic component compare
Dsui_0692 -1.9 -2.8 hypothetical protein compare
Dsui_0015 -1.9 -1.2 putative signal-transduction protein containing cAMP-binding and CBS domains compare
Dsui_3150 -1.9 -1.3 electron transfer flavoprotein, beta subunit compare
Dsui_1353 -1.9 -1.3 flagellar capping protein compare
Dsui_1676 -1.9 -1.3 biopolymer transport protein compare
Dsui_1701 -1.9 -1.3 restriction endonuclease compare
Dsui_1282 -1.9 -3.0 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
Dsui_0654 -1.9 -1.3 hypothetical protein compare
Dsui_1111 -1.9 -1.3 ABC-type branched-chain amino acid transport system, permease component compare
Dsui_0573 -1.9 -0.8 ferredoxin-like protein compare
Dsui_0107 -1.9 -1.8 PDZ domain-containing protein compare
Dsui_1825 -1.9 -1.3 NAD(P)H-dependent nitrite reductase, large subunit compare
Dsui_2866 -1.9 -1.3 outer membrane receptor for ferrienterochelin and colicins compare
Dsui_1607 -1.9 -1.9 putative membrane-associated protein compare
Dsui_1859 -1.9 -1.3 hypothetical protein compare
Dsui_0881 -1.9 -1.3 cAMP-binding protein compare
Dsui_2610 -1.8 -1.2 single-stranded DNA-binding protein compare
Dsui_3156 -1.8 -1.2 putative permease compare
Dsui_0007 -1.8 -2.6 cold shock protein compare
Dsui_0955 -1.8 -1.2 nitrogenase iron protein compare
Dsui_3520 -1.8 -15.0 heavy metal efflux pump, cobalt-zinc-cadmium compare
Dsui_2941 -1.8 -1.2 hypothetical protein compare
Dsui_0618 -1.8 -1.2 putative lipoprotein involved in nitrous oxide reduction compare
Dsui_2819 -1.8 -1.2 putative hydrolase or acyltransferase of alpha/beta superfamily compare
Dsui_3240 -1.8 -10.6 cobalamin biosynthesis protein cobD/CbiB compare
Dsui_2228 -1.8 -1.2 Zn-dependent alcohol dehydrogenase compare
Dsui_2072 -1.8 -1.2 Pirin-related protein compare
Dsui_0279 -1.8 -1.7 K+-transporting ATPase, KdpA compare
Dsui_1349 -1.8 -1.2 hypothetical protein compare
Dsui_2290 -1.8 -1.7 putative paraquat-inducible protein A compare
Dsui_1640 -1.8 -1.6 hypothetical protein compare
Dsui_0171 -1.8 -1.2 putative transcriptional regulator compare
Dsui_0313 -1.8 -2.4 putative transcriptional regulator compare
Dsui_3408 -1.8 -2.0 hypothetical protein compare
Dsui_2798 -1.8 -3.2 arabinose efflux permease family protein compare
Dsui_0522 -1.8 -6.1 SSS sodium solute transporter compare
Dsui_2079 -1.8 -2.6 histidine kinase compare
Dsui_1454 -1.8 -1.3 Rhodanese-like protein,cyclic nucleotide-binding protein compare
Dsui_3423 -1.8 -1.4 hydroxypyruvate isomerase compare
Dsui_0028 -1.8 -1.2 putative effector of murein hydrolase compare
Dsui_0215 -1.8 -0.9 hypothetical protein compare
Dsui_2921 -1.8 -2.3 isochorismate synthase family protein compare
Dsui_2933 -1.8 -1.2 heavy metal efflux pump, cobalt-zinc-cadmium compare
Dsui_1759 -1.8 -5.8 flagellar hook-basal body complex protein FliE compare
Dsui_0567 -1.8 -0.7 molybdenum-pterin binding domain protein compare
Dsui_0568 -1.8 -4.2 PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein compare
Dsui_2321 -1.8 -3.0 site-specific recombinase compare
Dsui_0523 -1.8 -0.9 putative membrane protein compare
Dsui_0392 -1.8 -1.2 diacylglycerol kinase compare
Dsui_2668 -1.8 -1.2 putative phosphatase compare
Dsui_2599 -1.8 -0.9 hypothetical protein compare
Dsui_0969 -1.8 -2.3 putative AP superfamily protein compare


Specific Phenotypes

None in this experiment

For Dechlorosoma suillum PS in stress experiments

For stress Sodium nitrate across organisms