Experiment set5IT021 for Methanococcus maripaludis S2

Compare to:

H2 deepwell acetate and casamino acid FREE

200 most important genes:

  gene name fitness t score description  
MMP_RS00300 -3.4 -0.9 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS09020 -3.1 -1.8 hypothetical protein compare
MMP_RS03450 -2.6 -3.3 glycine synthesis protein GlyXS (from data) compare
MMP_RS01020 -2.6 -1.5 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS07630 -2.6 -2.3 ATP-binding cassette domain-containing protein compare
MMP_RS06400 -2.4 -1.9 4Fe-4S binding protein compare
MMP_RS07845 -2.3 -3.2 LL-diaminopimelate aminotransferase compare
MMP_RS05515 -2.1 -9.0 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS01005 -2.1 -1.8 riboflavin synthase compare
MMP_RS04605 -2.0 -5.2 cobalt ECF transporter T component CbiQ compare
MMP_RS03015 -2.0 -11.4 GTP 3' 8-cyclase MoaA compare
MMP_RS06355 -2.0 -3.6 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS03315 -1.9 -1.4 ferrous iron transport protein A compare
MMP_RS07345 -1.8 -5.2 glycine synthesis protein GlyXL (from data) compare
MMP_RS04615 -1.8 -4.6 PDGLE domain-containing protein compare
MMP_RS03960 -1.8 -0.9 hypothetical protein compare
MMP_RS01500 -1.7 -2.2 CBS domain-containing protein compare
MMP_RS07635 -1.7 -5.8 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS06350 -1.7 -6.7 HesA/MoeB/ThiF family protein compare
MMP_RS03035 -1.7 -4.0 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS06285 -1.7 -2.4 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS02195 -1.7 -4.7 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS02010 -1.6 -7.9 PHP domain-containing protein compare
MMP_RS05555 -1.6 -1.8 DUF4040 domain-containing protein compare
MMP_RS08350 -1.6 -1.2 hypothetical protein compare
MMP_RS01455 -1.6 -6.9 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS07730 -1.6 -2.6 pyruvate synthase subunit beta compare
MMP_RS04620 -1.6 -9.9 cobalt transporter CbiM compare
MMP_RS06370 -1.6 -4.7 biotin synthase BioB compare
MMP_RS05500 -1.5 -7.8 2-isopropylmalate synthase compare
MMP_RS08330 -1.5 -6.9 NADH-quinone oxidoreductase subunit H compare
MMP_RS04500 -1.5 -10.9 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS04685 -1.5 -3.4 DUF126 domain-containing protein compare
MMP_RS02885 -1.5 -10.3 molybdopterin biosynthesis protein compare
MMP_RS07955 -1.4 -5.4 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS06375 -1.4 -4.3 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS05060 -1.4 -9.5 AAA family ATPase compare
MMP_RS05425 -1.4 -4.9 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS02175 -1.4 -0.9 DUF1611 domain-containing protein compare
MMP_RS01220 -1.4 -6.8 hypothetical protein compare
MMP_RS01700 -1.4 -1.1 dihydroxy-acid dehydratase compare
MMP_RS01175 -1.4 -4.4 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS07735 -1.4 -0.9 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS06925 -1.4 -2.8 ribonuclease VapC4 compare
MMP_RS03435 -1.4 -1.9 ketol-acid reductoisomerase compare
MMP_RS03025 -1.3 -5.4 molybdenum cofactor guanylyltransferase compare
MMP_RS02235 -1.3 -7.7 CBS domain-containing protein compare
MMP_RS08210 -1.3 -2.1 phosphatidylglycerophosphatase A compare
MMP_RS06270 -1.3 -5.9 TIGR00300 family protein compare
MMP_RS07575 -1.3 -4.0 RNA ligase partner protein compare
MMP_RS02355 -1.3 -3.1 30S ribosomal protein S27ae compare
MMP_RS06485 -1.3 -1.1 zinc ribbon domain-containing protein compare
MMP_RS07195 -1.3 -8.0 M20 family metallo-hydrolase compare
MMP_RS01960 -1.3 -0.7 hypothetical protein compare
MMP_RS06295 -1.3 -6.1 methanogenesis marker 14 protein compare
MMP_RS03445 -1.3 -1.1 methanogenesis marker 17 protein compare
MMP_RS05100 -1.3 -10.0 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMP_RS03600 -1.3 -1.7 triose-phosphate isomerase compare
MMP_RS01265 -1.3 -1.9 hypothetical protein compare
MMP_RS06120 -1.3 -2.0 UPF0147 family protein compare
MMP_RS05095 -1.3 -7.0 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMP_RS08300 -1.3 -1.2 metal-sulfur cluster assembly factor compare
MMP_RS05090 -1.3 -8.0 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMP_RS08725 -1.3 -2.1 Ni/Fe hydrogenase subunit alpha compare
MMP_RS05075 -1.3 -10.0 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMP_RS01755 -1.2 -1.3 DUF2097 domain-containing protein compare
MMP_RS05080 -1.2 -8.5 acetyl-CoA decarbonylase/synthase complex subunit delta compare
MMP_RS08100 -1.2 -6.0 8-amino-7-oxononanoate synthase compare
MMP_RS07645 -1.2 -5.5 aldehyde dehydrogenase family protein compare
MMP_RS04215 -1.2 -6.2 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS06340 -1.2 -6.4 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS08745 -1.2 -5.1 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS02135 -1.2 -4.5 DUF5612 domain-containing protein compare
MMP_RS04055 -1.2 -1.7 hypothetical protein compare
MMP_RS06700 -1.2 -7.1 hypothetical protein compare
MMP_RS05550 -1.2 -0.7 cation:proton antiporter compare
MMP_RS08320 -1.2 -4.5 molybdopterin molybdotransferase MoeA compare
MMP_RS02110 -1.2 -2.2 hypothetical protein compare
MMP_RS05065 -1.2 -4.3 CooT family nickel-binding protein compare
MMP_RS06105 -1.1 -5.6 hydrogenase maturation peptidase HycI compare
MMP_RS07185 -1.1 -7.1 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS03140 -1.1 -6.0 hypothetical protein compare
MMP_RS07445 -1.1 -4.3 helix-turn-helix domain-containing protein compare
MMP_RS06345 -1.1 -5.9 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS04775 -1.1 -2.8 adenosylhomocysteinase compare
MMP_RS00750 -1.1 -2.0 fumarate hydratase compare
MMP_RS06680 -1.1 -6.4 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS05070 -1.1 -6.0 4Fe-4S dicluster domain-containing protein compare
MMP_RS00685 -1.1 -4.1 2-phospho-L-lactate guanylyltransferase compare
MMP_RS08635 -1.1 -1.7 UbiA family prenyltransferase compare
MMP_RS07390 -1.1 -1.3 cell division protein FtsZ compare
MMP_RS01225 -1.1 -4.2 DUF5379 domain-containing protein compare
MMP_RS05055 -1.1 -7.6 DUF166 domain-containing protein compare
MMP_RS05930 -1.1 -1.6 3-isopropylmalate dehydratase large subunit compare
MMP_RS03250 -1.1 -2.2 MJ1244 family protein compare
MMP_RS08105 -1.1 -4.2 6-carboxyhexanoate--CoA ligase compare
MMP_RS04790 -1.0 -6.5 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS06630 -1.0 -0.8 UPF0058 family protein compare
MMP_RS01650 -1.0 -1.0 sulfurtransferase TusA family protein compare
MMP_RS02875 -1.0 -6.4 chorismate pyruvate-lyase family protein compare
MMP_RS06625 -1.0 -1.5 DNA primase compare
MMP_RS03145 -1.0 -4.5 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS08165 -1.0 -1.8 phosphoglycerate dehydrogenase compare
MMP_RS08360 -1.0 -3.1 hypothetical protein compare
MMP_RS06865 -1.0 -1.8 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS08785 -1.0 -0.8 RNA-protein complex protein Nop10 compare
MMP_RS05950 -1.0 -5.0 nickel-dependent hydrogenase large subunit compare
MMP_RS05085 -1.0 -3.8 AAA family ATPase compare
MMP_RS02280 -1.0 -0.8 DUF211 domain-containing protein compare
MMP_RS07600 -1.0 -2.3 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS00735 -1.0 -3.1 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS00130 -1.0 -0.8 nickel-responsive transcriptional regulator NikR compare
MMP_RS04305 -1.0 -1.2 hypothetical protein compare
MMP_RS03640 -1.0 -2.9 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS05845 -0.9 -1.4 tRNA-intron lyase compare
MMP_RS07755 -0.9 -1.0 DUF555 domain-containing protein compare
MMP_RS00900 -0.9 -1.3 50S ribosomal protein L39e compare
MMP_RS08095 -0.9 -4.3 dethiobiotin synthase compare
MMP_RS06020 -0.9 -2.9 archaeoflavoprotein AfpA compare
MMP_RS03390 -0.9 -4.6 malate dehydrogenase compare
MMP_RS02240 -0.9 -2.2 methanogenesis marker 7 protein compare
MMP_RS01250 -0.9 -3.7 tRNA (guanine(26)-N(2))-dimethyltransferase compare
MMP_RS07525 -0.9 -4.6 4Fe-4S binding protein compare
MMP_RS05875 -0.9 -4.2 hydroxyethylthiazole kinase compare
MMP_RS05265 -0.9 -1.3 2-isopropylmalate synthase compare
MMP_RS06705 -0.9 -3.2 formate/nitrite transporter family protein compare
MMP_RS03095 -0.9 -3.3 diphthine synthase compare
MMP_RS05315 -0.9 -1.8 hypothetical protein compare
MMP_RS05540 -0.9 -2.5 hypothetical protein compare
MMP_RS06730 -0.9 -1.2 phosphopantothenate/pantothenate synthetase compare
MMP_RS07355 -0.8 -0.7 transcription factor S compare
MMP_RS07200 -0.8 -3.2 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS03700 -0.8 -4.3 sodium:proton antiporter compare
MMP_RS03155 -0.8 -4.0 precorrin-6A reductase compare
MMP_RS01800 -0.8 -2.0 TIGR00303 family protein compare
MMP_RS07720 -0.8 -5.9 4Fe-4S binding protein compare
MMP_RS07750 -0.8 -2.4 DUF357 domain-containing protein compare
MMP_RS07350 -0.8 -1.3 preprotein translocase subunit Sec61beta compare
MMP_RS00515 -0.8 -0.8 DUF655 domain-containing protein compare
MMP_RS07005 -0.8 -0.4 4Fe-4S binding protein compare
MMP_RS04780 -0.8 -1.8 ribonuclease P compare
MMP_RS00080 -0.8 -3.0 RecB-family nuclease compare
MMP_RS04875 -0.8 -2.2 energy-converting hydrogenase B subunit P compare
MMP_RS08240 -0.8 -4.4 methanogenesis marker 16 metalloprotein compare
MMP_RS07380 -0.8 -1.1 transcription elongation factor Spt5 compare
MMP_RS00810 -0.8 -3.9 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS00115 -0.8 -4.9 radical SAM protein compare
MMP_RS00770 -0.8 -2.7 hypothetical protein compare
MMP_RS08415 -0.8 -2.4 radical SAM protein compare
MMP_RS03420 -0.8 -1.3 acetolactate synthase small subunit compare
MMP_RS06895 -0.8 -1.2 selenocysteine-specific translation elongation factor compare
MMP_RS08820 -0.8 -2.5 hypothetical protein compare
MMP_RS01335 -0.8 -1.6 prefoldin subunit beta compare
MMP_RS08720 -0.8 -1.0 4Fe-4S binding protein compare
MMP_RS01910 -0.8 -5.3 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS02130 -0.7 -3.4 zinc metalloprotease HtpX compare
MMP_RS01240 -0.7 -1.5 7-cyano-7-deazaguanine synthase QueC compare
MMP_RS00720 -0.7 -4.0 metal-dependent hydrolase compare
MMP_RS02495 -0.7 -1.7 hypothetical protein compare
MMP_RS08460 -0.7 -1.3 proteasome-activating nucleotidase compare
MMP_RS06975 -0.7 -1.5 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS05925 -0.7 -1.8 small nuclear ribonucleoprotein compare
MMP_RS01830 -0.7 -0.9 tRNA-Val compare
MMP_RS08345 -0.7 -4.1 4Fe-4S binding protein compare
MMP_RS00895 -0.7 -2.1 hypothetical protein compare
MMP_RS02955 -0.7 -2.1 DJ-1/PfpI family protein compare
MMP_RS08365 -0.7 -1.6 energy conserving hydrogenase EhbF compare
MMP_RS00695 -0.7 -0.5 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS01720 -0.7 -1.3 replication factor C large subunit compare
MMP_RS01385 -0.7 -0.4 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS00120 -0.7 -2.5 LysR family transcriptional regulator compare
MMP_RS07710 -0.7 -3.4 cell division protein FtsZ compare
MMP_RS06475 -0.6 -2.2 FAD-dependent oxidoreductase compare
MMP_RS08340 -0.6 -1.6 4Fe-4S binding protein compare
MMP_RS08335 -0.6 -2.3 NADH-quinone oxidoreductase subunit B family protein compare
MMP_RS07545 -0.6 -0.6 HTH domain-containing protein compare
MMP_RS03395 -0.6 -2.1 hypothetical protein compare
MMP_RS01195 -0.6 -0.8 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS00295 -0.6 -1.4 gamma carbonic anhydrase family protein compare
MMP_RS08355 -0.6 -2.8 Na(+)/H(+) antiporter subunit B compare
MMP_RS06585 -0.6 -1.1 DMT family protein compare
MMP_RS02800 -0.6 -1.9 nucleotidyltransferase domain-containing protein compare
MMP_RS01775 -0.6 -1.0 TIGR00297 family protein compare
MMP_RS02245 -0.6 -1.5 hypothetical protein compare
MMP_RS03475 -0.6 -0.3 hypothetical protein compare
MMP_RS02045 -0.6 -1.0 tRNA-Met compare
MMP_RS00915 -0.6 -2.7 DUF116 domain-containing protein compare
MMP_RS06495 -0.6 -1.4 YkgJ family cysteine cluster protein compare
MMP_RS06685 -0.6 -3.2 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS00305 -0.6 -1.0 phosphoribosyl-ATP diphosphatase compare
MMP_RS01955 -0.6 -1.2 hypothetical protein compare
MMP_RS04785 -0.6 -4.1 hypothetical protein compare
MMP_RS07365 -0.6 -4.2 2-phosphoglycerate kinase compare
MMP_RS01085 -0.6 -1.0 hypothetical protein compare
MMP_RS00520 -0.6 -0.8 RNA polymerase Rpb4 family protein compare
MMP_RS08645 -0.6 -2.6 UPF0179 family protein compare
MMP_RS07970 -0.6 -1.0 hypothetical protein compare
MMP_RS07555 -0.6 -0.4 monovalent cation/H+ antiporter subunit E compare
MMP_RS02935 -0.6 -2.5 A24 family peptidase compare
MMP_RS07535 -0.6 -2.8 4Fe-4S binding protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t1 experiments

For nutrient t1 Mc_vitamins across organisms