Experiment set5IT020 for Pseudomonas fluorescens FW300-N2E3

Compare to:

L-tyrosine disodium salt nitrogen source

200 most important genes:

  gene name fitness t score description  
AO353_13070 -5.0 -7.7 phosphoserine phosphatase compare
AO353_15560 -5.0 -3.5 Maleylacetoacetate isomerase (EC 5.2.1.2) (from data) compare
AO353_07220 -4.8 -8.0 anthranilate synthase compare
AO353_20695 -4.4 -7.8 O-succinylhomoserine sulfhydrylase compare
AO353_08185 -4.3 -11.8 methionine biosynthesis protein MetW compare
AO353_12070 -4.3 -11.1 imidazoleglycerol-phosphate dehydratase compare
AO353_12085 -4.3 -10.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_05115 -4.3 -12.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_10670 -4.3 -9.9 shikimate dehydrogenase compare
AO353_02070 -4.3 -7.1 prephenate dehydratase compare
AO353_13160 -4.1 -2.9 membrane protease HflC compare
AO353_12150 -4.1 -7.9 histidine kinase compare
AO353_20665 -4.1 -12.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_13165 -4.1 -7.4 ATP phosphoribosyltransferase regulatory subunit compare
AO353_20625 -4.1 -5.6 3-isopropylmalate dehydratase compare
AO353_12090 -4.1 -2.8 imidazole glycerol phosphate synthase subunit HisF compare
AO353_07230 -4.0 -20.1 anthranilate synthase compare
AO353_08475 -4.0 -11.9 phosphoserine phosphatase compare
AO353_08345 -3.9 -11.6 dihydroxy-acid dehydratase compare
AO353_10710 -3.9 -4.6 tryptophan synthase subunit beta compare
AO353_11750 -3.9 -3.7 ATPase compare
AO353_12500 -3.9 -2.7 shikimate kinase compare
AO353_20635 -3.8 -15.1 3-isopropylmalate dehydrogenase compare
AO353_00310 -3.8 -11.5 transaldolase compare
AO353_07210 -3.7 -7.1 indole-3-glycerol-phosphate synthase compare
AO353_22945 -3.7 -15.4 glycogen branching protein compare
AO353_08180 -3.7 -16.3 homoserine O-acetyltransferase compare
AO353_08685 -3.7 -9.4 N-acetylglutamate synthase compare
AO353_14505 -3.7 -15.2 ketol-acid reductoisomerase compare
AO353_12360 -3.6 -11.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_05110 -3.6 -13.8 histidinol dehydrogenase compare
AO353_12365 -3.6 -6.0 phosphoribosyl-AMP cyclohydrolase compare
AO353_20620 -3.6 -7.1 isopropylmalate isomerase compare
AO353_12075 -3.5 -11.2 imidazole glycerol phosphate synthase subunit HisH compare
AO353_02075 -3.5 -14.1 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_02710 -3.5 -15.0 (p)ppGpp synthetase compare
AO353_14500 -3.5 -8.9 acetolactate synthase 3 regulatory subunit compare
AO353_26925 -3.5 -9.1 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data) conserved
AO353_04105 -3.4 -9.9 argininosuccinate synthase compare
AO353_14495 -3.3 -14.1 acetolactate synthase 3 catalytic subunit compare
AO353_22800 -3.3 -4.9 sulfite reductase compare
AO353_06495 -3.3 -7.3 gamma-glutamyl phosphate reductase compare
AO353_14400 -3.3 -5.8 Fis family transcriptional regulator compare
AO353_12115 -3.3 -3.8 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_04155 -3.2 -14.8 ornithine carbamoyltransferase compare
AO353_03525 -3.2 -12.6 quinolinate synthase A compare
AO353_16450 -3.2 -14.9 protein-PII uridylyltransferase compare
AO353_07155 -3.1 -8.9 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_08015 -3.1 -9.7 5,10-methylenetetrahydrofolate reductase compare
AO353_09240 -3.1 -4.2 acetylglutamate kinase compare
AO353_12145 -3.1 -6.3 nitrogen regulation protein NR(I) compare
AO353_07215 -3.0 -8.7 anthranilate phosphoribosyltransferase compare
AO353_08165 -3.0 -4.6 pyrroline-5-carboxylate reductase compare
AO353_07515 -2.9 -3.5 transporter compare
AO353_01375 -2.9 -8.2 phosphate acyltransferase compare
AO353_08510 -2.8 -7.7 3-phosphoglycerate dehydrogenase compare
AO353_00620 -2.8 -3.8 cytochrome C oxidase Cbb3 compare
AO353_15925 -2.7 -10.3 2-isopropylmalate synthase compare
AO353_09000 -2.7 -7.0 argininosuccinate lyase compare
AO353_18575 -2.6 -6.1 tyrosine aminotransferase (EC 2.6.1.57) (from data) conserved
AO353_07525 -2.5 -13.8 biotin synthase compare
AO353_08880 -2.4 -3.5 exopolyphosphatase compare
AO353_23495 -2.3 -2.7 SAM-dependent methyltransferase compare
AO353_07505 -2.3 -8.7 dethiobiotin synthetase compare
AO353_14420 -2.3 -6.1 molecular chaperone DnaK compare
AO353_15555 -2.3 -5.3 fumarylacetoacetase compare
AO353_10705 -2.3 -5.5 tryptophan synthase subunit alpha compare
AO353_04220 -2.3 -7.4 chemotaxis protein CheY compare
AO353_16940 -2.3 -7.2 deoxycytidine triphosphate deaminase compare
AO353_21625 -2.3 -2.7 Fe/S biogenesis protein NfuA compare
AO353_18555 -2.3 -12.3 aromatic amino acid transporter compare
AO353_18590 -2.3 -9.0 AAA family ATPase conserved
AO353_14115 -2.2 -7.7 gamma-glutamyl kinase compare
AO353_27380 -2.2 -2.7 pyocin R2, holin compare
AO353_08045 -2.1 -13.5 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_13640 -2.1 -5.0 histidine kinase compare
AO353_00650 -2.1 -3.8 cytochrome biogenesis protein compare
AO353_15550 -2.1 -10.4 Homogentisate 1,2-dioxygenase (EC 1.13.11.5) (from data) compare
AO353_05520 -2.0 -6.6 nicotinate-nucleotide pyrophosphorylase compare
AO353_14150 -2.0 -2.6 peptidylprolyl isomerase compare
AO353_07510 -2.0 -7.6 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_07140 -1.9 -13.3 peptidase M23 compare
AO353_06050 -1.9 -7.8 exodeoxyribonuclease V subunit gamma compare
AO353_13155 -1.9 -4.1 hypothetical protein compare
AO353_06045 -1.9 -8.0 exodeoxyribonuclease V subunit beta compare
AO353_02250 -1.8 -3.0 chorismate synthase compare
AO353_08780 -1.7 -7.0 5-formyltetrahydrofolate cyclo-ligase compare
AO353_07325 -1.7 -2.5 diadenosine tetraphosphatase compare
AO353_25335 -1.7 -3.1 malonate decarboxylase acyl carrier protein compare
AO353_10025 -1.7 -10.8 pyruvate carboxylase subunit B compare
AO353_07520 -1.7 -10.4 8-amino-7-oxononanoate synthase compare
AO353_19360 -1.7 -2.9 peroxiredoxin compare
AO353_03590 -1.7 -3.9 crossover junction endodeoxyribonuclease RuvC compare
AO353_13140 -1.6 -5.7 tRNA dimethylallyltransferase compare
AO353_18135 -1.6 -3.3 hypothetical protein compare
AO353_17110 -1.6 -4.0 ABC transporter ATP-binding protein compare
AO353_00825 -1.6 -4.4 porin compare
AO353_02600 -1.6 -3.1 alpha-ribazole phosphatase compare
AO353_14485 -1.5 -1.8 pseudouridine synthase compare
AO353_10455 -1.5 -2.2 tRNA modification GTPase MnmE compare
AO353_10030 -1.5 -7.9 pyruvate carboxylase subunit A compare
AO353_19295 -1.5 -3.1 hypothetical protein compare
AO353_19145 -1.5 -4.0 protease HtpX compare
AO353_02970 -1.4 -3.8 carbon storage regulator compare
AO353_00750 -1.4 -4.6 GntR family transcriptional regulator compare
AO353_04355 -1.4 -2.5 homoserine dehydrogenase compare
AO353_13130 -1.4 -4.1 N-acetylmuramoyl-L-alanine amidase compare
AO353_03795 -1.4 -4.2 fumarate hydratase compare
AO353_08265 -1.4 -5.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_17410 -1.3 -2.3 arylsulfate sulfotransferase compare
AO353_14405 -1.3 -7.2 ATPase compare
AO353_06850 -1.3 -4.1 MFS transporter compare
AO353_10510 -1.3 -1.8 benzoate transporter compare
AO353_06040 -1.3 -3.4 exodeoxyribonuclease V subunit alpha compare
AO353_01045 -1.3 -2.6 phasin compare
AO353_17290 -1.3 -4.5 multidrug transporter compare
AO353_10035 -1.2 -5.3 LysR family transcriptional regulator compare
AO353_16810 -1.2 -2.3 recombinase RecX compare
AO353_14220 -1.2 -1.8 ribosomal large subunit pseudouridine synthase D compare
AO353_08060 -1.2 -2.9 hypothetical protein compare
AO353_27650 -1.2 -3.4 cell division protein FtsK compare
AO353_19060 -1.2 -4.2 CysB family transcriptional regulator compare
AO353_02720 -1.2 -4.6 cysteine synthase compare
AO353_20175 -1.2 -3.1 ATP-dependent Clp protease proteolytic subunit compare
AO353_18325 -1.2 -2.5 hypothetical protein compare
AO353_06460 -1.2 -5.5 hypothetical protein compare
AO353_00605 -1.2 -5.1 cytochrome C oxidase Cbb3 compare
AO353_03545 -1.2 -4.4 hypothetical protein compare
AO353_18585 -1.1 -5.9 Phenylalanine 4-monooxygenase (EC 1.14.16.1) (from data) compare
AO353_15250 -1.1 -3.0 cytochrome B compare
AO353_11165 -1.1 -6.4 hypothetical protein compare
AO353_21330 -1.1 -5.4 RpiR family transcriptional regulator compare
AO353_17650 -1.1 -3.4 response regulator SirA compare
AO353_03580 -1.1 -2.8 ATP-dependent DNA helicase RuvB compare
AO353_15185 -1.1 -4.2 ATPase compare
AO353_24440 -1.1 -2.6 reactive intermediate/imine deaminase compare
AO353_12460 -1.1 -5.8 malate dehydrogenase compare
AO353_13225 -1.1 -3.0 50S ribosomal protein L9 compare
AO353_00495 -1.1 -1.6 DNA topoisomerase I compare
AO353_09050 -1.1 -2.8 recombinase XerC compare
AO353_12240 -1.1 -3.7 histidine utilization repressor compare
AO353_22345 -1.1 -4.8 ATPase compare
AO353_07315 -1.0 -2.0 rRNA methyltransferase compare
AO353_11730 -1.0 -6.1 glutamate--cysteine ligase compare
AO353_28495 -1.0 -2.9 hypothetical protein compare
AO353_07910 -1.0 -2.3 hypothetical protein compare
AO353_24130 -1.0 -1.6 hypothetical protein compare
AO353_17105 -1.0 -4.4 ABC transporter ATP-binding protein compare
AO353_18715 -1.0 -1.3 histidine kinase compare
AO353_03970 -1.0 -6.9 diguanylate cyclase compare
AO353_24550 -1.0 -2.8 hypothetical protein compare
AO353_25330 -1.0 -3.5 biotin-independent malonate decarboxylase subunit beta compare
AO353_02685 -1.0 -2.4 phosphoribosylglycinamide formyltransferase compare
AO353_20095 -1.0 -3.1 histidine kinase compare
AO353_05105 -1.0 -5.4 histidinol-phosphate aminotransferase compare
AO353_03510 -1.0 -2.7 glycine cleavage system protein T compare
AO353_08980 -1.0 -2.7 heme biosynthesis operon protein HemX compare
AO353_03585 -1.0 -1.5 ATP-dependent DNA helicase RuvA compare
AO353_15725 -1.0 -2.9 hypothetical protein compare
AO353_08215 -1.0 -2.8 thiazole synthase compare
AO353_22280 -0.9 -2.0 hypothetical protein compare
AO353_23385 -0.9 -4.4 trans-2-enoyl-CoA reductase compare
AO353_22350 -0.9 -3.3 LuxR family transcriptional regulator compare
AO353_22385 -0.9 -6.4 dehydrogenase compare
AO353_17120 -0.9 -6.3 branched-chain amino acid transporter permease subunit LivH compare
AO353_04965 -0.9 -3.3 D-erythro-7,8-dihydroneopterin triphosphate epimerase compare
AO353_18005 -0.9 -3.0 allophanate hydrolase compare
AO353_15900 -0.9 -1.7 GTP-binding protein compare
AO353_09260 -0.9 -4.2 ribonuclease PH compare
AO353_11530 -0.9 -5.1 diguanylate cyclase compare
AO353_21630 -0.9 -2.4 precorrin-4 C11-methyltransferase compare
AO353_26070 -0.9 -2.4 hypothetical protein compare
AO353_22415 -0.9 -2.3 alcohol dehydrogenase compare
AO353_17295 -0.9 -7.2 multidrug transporter compare
AO353_27550 -0.9 -1.6 hypothetical protein compare
AO353_05415 -0.9 -2.3 hypothetical protein compare
AO353_12930 -0.9 -2.1 GlcNAc-PI de-N-acetylase compare
AO353_10435 -0.9 -4.7 chromosome partitioning protein compare
AO353_27130 -0.9 -1.6 hypothetical protein compare
AO353_03520 -0.8 -1.4 hypothetical protein compare
AO353_09945 -0.8 -2.8 LysR family transcriptional regulator compare
AO353_26090 -0.8 -1.8 hypothetical protein compare
AO353_28055 -0.8 -1.7 hypothetical protein compare
AO353_15665 -0.8 -2.2 chemotaxis protein CheY compare
AO353_12345 -0.8 -1.3 twin-arginine protein translocation system subunit TatC compare
AO353_07900 -0.8 -2.0 hypothetical protein compare
AO353_09875 -0.8 -1.2 hypothetical protein compare
AO353_11485 -0.8 -2.4 hypothetical protein compare
AO353_25490 -0.8 -2.2 transcriptional regulator compare
AO353_09070 -0.8 -5.6 ammonia channel protein compare
AO353_21640 -0.8 -1.6 cobalt transporter compare
AO353_03020 -0.8 -4.1 arginine N-succinyltransferase compare
AO353_16495 -0.8 -2.9 zinc metallopeptidase RseP compare
AO353_17300 -0.8 -4.2 antibiotic transporter compare
AO353_17640 -0.8 -1.8 serine peptidase compare
AO353_23905 -0.8 -2.4 GntR family transcriptional regulator compare
AO353_03875 -0.8 -2.9 3-beta hydroxysteroid dehydrogenase compare
AO353_12390 -0.8 -2.5 poly(3-hydroxyalkanoate) granule-associated protein PhaI compare
AO353_20200 -0.8 -2.4 peptidylprolyl isomerase compare
AO353_05550 -0.8 -3.3 pseudouridine synthase compare


Specific Phenotypes

For 4 genes in this experiment

For nitrogen source L-tyrosine disodium salt in Pseudomonas fluorescens FW300-N2E3

For nitrogen source L-tyrosine disodium salt across organisms