Experiment set5IT020 for Pseudomonas fluorescens FW300-N1B4

Compare to:

LB 37C

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_799 -5.7 -3.2 hypothetical protein compare
Pf1N1B4_4960 -4.5 -3.1 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf1N1B4_1958 -3.8 -3.2 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_3168 -3.7 -4.4 AmpG permease compare
Pf1N1B4_164 -3.7 -3.6 ADP-ribosylglycohydrolase family protein compare
Pf1N1B4_2783 -3.6 -3.0 Transcription elongation factor GreB-related protein compare
Pf1N1B4_617 -3.6 -3.0 Carbamate kinase (EC 2.7.2.2) compare
Pf1N1B4_3525 -3.5 -3.4 hydrolase, alpha/beta fold family compare
Pf1N1B4_1782 -3.5 -3.2 hypothetical protein compare
Pf1N1B4_5560 -3.5 -2.6 hypothetical protein compare
Pf1N1B4_3499 -3.3 -2.1 hypothetical protein compare
Pf1N1B4_126 -3.2 -2.8 Pirin compare
Pf1N1B4_539 -3.1 -3.0 Transcriptional regulators compare
Pf1N1B4_2026 -3.0 -4.1 Transcriptional regulator compare
Pf1N1B4_1891 -2.9 -2.1 ABC-type transport system involved in resistance to organic solvents, periplasmic component USSDB6C compare
Pf1N1B4_567 -2.9 -3.2 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf1N1B4_3023 -2.9 -3.2 hypothetical protein compare
Pf1N1B4_2106 -2.8 -4.4 Hydrogen peroxide-inducible genes activator compare
Pf1N1B4_3981 -2.7 -3.2 Predicted carboxypeptidase compare
Pf1N1B4_4980 -2.7 -2.6 putative lipoprotein compare
Pf1N1B4_4563 -2.7 -3.2 Sulfate transporter compare
Pf1N1B4_345 -2.7 -1.7 Integration host factor beta subunit compare
Pf1N1B4_5519 -2.5 -4.5 hypothetical protein compare
Pf1N1B4_3997 -2.4 -3.8 Uncharacterized protein YtfM precursor compare
Pf1N1B4_4533 -2.4 -2.8 Uncharacterized protein ImpH/VasB compare
Pf1N1B4_5302 -2.3 -3.4 hypothetical protein compare
Pf1N1B4_1993 -2.3 -1.8 C4-type zinc finger protein, DksA/TraR family compare
Pf1N1B4_3408 -2.3 -3.1 Transcriptional regulator, AraC family compare
Pf1N1B4_1691 -2.3 -1.8 hypothetical protein compare
Pf1N1B4_2048 -2.3 -2.4 hypothetical protein compare
Pf1N1B4_2178 -2.3 -1.8 Regulator of nucleoside diphosphate kinase compare
Pf1N1B4_2269 -2.2 -3.5 Purine nucleoside phosphorylase (EC 2.4.2.1) compare
Pf1N1B4_3998 -2.1 -3.3 putative exported protein compare
Pf1N1B4_4887 -2.1 -3.0 Pirin compare
Pf1N1B4_606 -2.0 -1.9 Iron siderophore sensor protein compare
Pf1N1B4_1472 -2.0 -1.4 Lipopolysaccharide heptosyltransferase I (EC 2.4.1.-) compare
Pf1N1B4_4396 -2.0 -2.9 Arginine/ornithine ABC transporter, ATP-binding protein AotP compare
Pf1N1B4_5724 -2.0 -2.4 High-affinity iron permease compare
Pf1N1B4_3126 -1.9 -3.4 Phage tail length tape-measure protein compare
Pf1N1B4_5275 -1.9 -2.1 hypothetical protein compare
Pf1N1B4_5995 -1.9 -1.8 Transporter, MFS superfamily compare
Pf1N1B4_5997 -1.9 -2.8 Taurine dioxygenase (EC 1.14.11.17) compare
Pf1N1B4_322 -1.9 -3.1 nucleotide sugar epimerase/dehydratase WbpM compare
Pf1N1B4_324 -1.9 -2.1 Glycosyl transferase, group 2 family protein compare
Pf1N1B4_49 -1.9 -2.6 hypothetical protein compare
Pf1N1B4_2284 -1.9 -4.3 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf1N1B4_1670 -1.9 -3.4 FIG001957: putative hydrolase compare
Pf1N1B4_4119 -1.8 -2.3 dioxygenase compare
Pf1N1B4_748 -1.8 -4.3 hypothetical protein compare
Pf1N1B4_2005 -1.8 -1.9 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_76 -1.8 -2.6 ATP binding protein compare
Pf1N1B4_4866 -1.8 -2.4 hypothetical protein compare
Pf1N1B4_4299 -1.8 -2.7 sensor histidine kinase compare
Pf1N1B4_4301 -1.8 -2.3 hypothetical protein compare
Pf1N1B4_883 -1.8 -2.1 Hypothetical nudix hydrolase YeaB compare
Pf1N1B4_5699 -1.7 -1.8 ABC-type uncharacterized transport system, ATPase component compare
Pf1N1B4_644 -1.7 -2.4 Cold shock protein CspC compare
Pf1N1B4_4814 -1.7 -1.3 Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1) compare
Pf1N1B4_1135 -1.7 -1.7 FIG00960055: hypothetical protein compare
Pf1N1B4_1535 -1.7 -4.1 hypothetical protein compare
Pf1N1B4_5580 -1.7 -4.3 Probable poly(beta-D-mannuronate) O-acetylase (EC 2.3.1.-) compare
Pf1N1B4_3538 -1.7 -2.0 Transcriptional regulator, AraC family compare
Pf1N1B4_35 -1.7 -3.2 hypothetical protein compare
Pf1N1B4_5564 -1.7 -3.5 hypothetical protein compare
Pf1N1B4_3064 -1.7 -3.7 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_4118 -1.7 -2.7 Cyn operon transcriptional activator compare
Pf1N1B4_4134 -1.7 -2.1 Na+ driven multidrug efflux pump compare
Pf1N1B4_1388 -1.6 -2.9 Azurin compare
Pf1N1B4_3956 -1.6 -3.8 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7) compare
Pf1N1B4_3779 -1.6 -2.2 Hydrolase, alpha/beta fold family functionally coupled to Phosphoribulokinase compare
Pf1N1B4_649 -1.6 -2.2 Small-conductance mechanosensitive channel compare
Pf1N1B4_1629 -1.6 -2.4 FIG00958480: hypothetical protein compare
Pf1N1B4_4696 -1.6 -2.9 Phenylacetate-coenzyme A ligase (EC 6.2.1.30) compare
Pf1N1B4_5719 -1.6 -1.8 hypothetical protein compare
Pf1N1B4_4831 -1.6 -2.3 Outer membrane protein assembly factor YaeT precursor compare
Pf1N1B4_2912 -1.6 -1.8 GTP-binding and nucleic acid-binding protein YchF compare
Pf1N1B4_4918 -1.6 -2.2 Predicted enzyme of the cupin superfamily compare
Pf1N1B4_4250 -1.6 -1.9 Methyltransferase (EC 2.1.1.-) compare
Pf1N1B4_4198 -1.6 -2.1 4-hydroxybenzoate transporter compare
Pf1N1B4_2874 -1.6 -2.0 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_2164 -1.6 -2.5 Prophage antirepressor compare
Pf1N1B4_1827 -1.6 -4.2 FIG00953482: hypothetical protein compare
Pf1N1B4_1035 -1.6 -2.7 Hypothetical flavoprotein YqcA (clustered with tRNA pseudouridine synthase C) compare
Pf1N1B4_4517 -1.6 -2.1 Dihydropyrimidinase (EC 3.5.2.2) compare
Pf1N1B4_16 -1.5 -3.1 Cys regulon transcriptional activator CysB compare
Pf1N1B4_139 -1.5 -1.8 Pyoverdin biosynthesis protein PvdN, putative aminotransferase, class V compare
Pf1N1B4_1974 -1.5 -1.6 L-lysine permease compare
Pf1N1B4_5243 -1.5 -1.6 hypothetical protein compare
Pf1N1B4_691 -1.5 -2.4 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) compare
Pf1N1B4_4001 -1.5 -1.4 Membrane fusion component of tripartite multidrug resistance system compare
Pf1N1B4_4723 -1.5 -2.4 UPF0141 membrane protein YijP possibly required for phosphoethanolamine modification of lipopolysaccharide compare
Pf1N1B4_5451 -1.5 -2.0 hypothetical protein compare
Pf1N1B4_525 -1.5 -2.8 Agmatinase (EC 3.5.3.11) compare
Pf1N1B4_4108 -1.5 -1.6 Hydrolase, alpha/beta fold family compare
Pf1N1B4_697 -1.5 -3.1 Glycine cleavage system transcriptional activator compare
Pf1N1B4_608 -1.5 -1.8 Heme oxygenase HemO, associated with heme uptake compare
Pf1N1B4_866 -1.5 -1.5 Iron-sulfur cluster regulator IscR compare
Pf1N1B4_2085 -1.5 -2.0 Uncharacterized protein similar to VCA0109 compare
Pf1N1B4_4582 -1.5 -1.7 hypothetical protein compare
Pf1N1B4_3222 -1.5 -2.1 Ferredoxin compare
Pf1N1B4_4205 -1.5 -1.8 Probable signal peptide protein compare
Pf1N1B4_2453 -1.5 -1.8 hypothetical protein compare
Pf1N1B4_4929 -1.5 -1.9 Opine oxidase subunit B compare
Pf1N1B4_4178 -1.5 -3.2 Cell division protein FtsH (EC 3.4.24.-) compare
Pf1N1B4_1003 -1.5 -2.1 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_4982 -1.5 -1.4 Transcriptional regulator, AraC family compare
Pf1N1B4_1019 -1.5 -4.0 Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4) compare
Pf1N1B4_1091 -1.5 -3.8 FIG138315: Putative alpha helix protein compare
Pf1N1B4_4571 -1.5 -2.6 ADA regulatory protein / Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf1N1B4_5834 -1.5 -1.7 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) compare
Pf1N1B4_4995 -1.5 -2.7 Glutamate Aspartate periplasmic binding protein precursor GltI (TC 3.A.1.3.4) compare
Pf1N1B4_5880 -1.5 -2.2 AttH component of AttEFGH ABC transport system compare
Pf1N1B4_522 -1.4 -1.5 HlyD family secretion protein compare
Pf1N1B4_50 -1.4 -3.2 Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf1N1B4_3368 -1.4 -2.0 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf1N1B4_5674 -1.4 -1.7 Strictosidine synthase precursor (EC 4.3.3.2) compare
Pf1N1B4_1897 -1.4 -3.4 Integral membrane protein TerC compare
Pf1N1B4_5031 -1.4 -2.2 Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1) compare
Pf1N1B4_5639 -1.4 -2.9 D-serine deaminase (EC 4.3.1.18) compare
Pf1N1B4_2249 -1.4 -2.4 Alkanesulfonate monooxygenase (EC 1.14.14.5) compare
Pf1N1B4_5720 -1.4 -1.4 hypothetical protein compare
Pf1N1B4_3889 -1.4 -1.2 hypothetical protein compare
Pf1N1B4_5722 -1.4 -1.7 Periplasmic protein p19 involved in high-affinity Fe2+ transport compare
Pf1N1B4_403 -1.4 -1.2 FIG00965925: hypothetical protein compare
Pf1N1B4_3056 -1.4 -2.2 Probable carboxyvinyl-carboxyphosphonate phosphorylmutase (EC 2.7.8.23) compare
Pf1N1B4_4260 -1.4 -2.9 FIG00965772: hypothetical protein compare
Pf1N1B4_4799 -1.4 -1.9 Multidrug resistance protein B compare
Pf1N1B4_5289 -1.4 -2.1 hypothetical protein compare
Pf1N1B4_338 -1.4 -2.3 Alpha-L-Rha alpha-1,3-L-rhamnosyltransferase (EC 2.4.1.-) compare
Pf1N1B4_4715 -1.3 -1.4 Transcriptional regulator compare
Pf1N1B4_2792 -1.3 -2.6 FIG00953454: hypothetical protein compare
Pf1N1B4_3405 -1.3 -2.7 Signal transduction histidine kinase compare
Pf1N1B4_4482 -1.3 -1.9 FIG146518: Zn-dependent hydrolases, including glyoxylases compare
Pf1N1B4_1340 -1.3 -1.6 ABC transporter (iron.B12.siderophore.hemin) , periplasmic substrate-binding component compare
Pf1N1B4_3413 -1.3 -1.7 Transcriptional regulator, LysR family compare
Pf1N1B4_5864 -1.3 -1.4 Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF compare
Pf1N1B4_2432 -1.3 -1.6 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf1N1B4_5697 -1.3 -3.5 putative exported protein compare
Pf1N1B4_4438 -1.3 -1.4 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf1N1B4_107 -1.3 -2.2 FIG00857858: hypothetical protein compare
Pf1N1B4_3563 -1.3 -1.5 hypothetical protein compare
Pf1N1B4_4156 -1.3 -1.3 putative secreted protein compare
Pf1N1B4_4531 -1.3 -1.3 FIG01221261: hypothetical protein compare
Pf1N1B4_3935 -1.3 -2.4 Major facilitator family transporter compare
Pf1N1B4_3917 -1.3 -2.5 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf1N1B4_3537 -1.3 -2.6 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf1N1B4_2684 -1.3 -1.9 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Pf1N1B4_5219 -1.3 -1.6 tRNA-Gly-CCC compare
Pf1N1B4_1391 -1.3 -3.2 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf1N1B4_3991 -1.3 -1.2 Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family compare
Pf1N1B4_4972 -1.3 -1.5 CELL PROCESSES; Adaptation; adaptations, atypical conditions compare
Pf1N1B4_4139 -1.3 -1.5 Transcriptional regulator, MerR family compare
Pf1N1B4_1118 -1.3 -2.4 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_5489 -1.3 -2.2 hypothetical protein compare
Pf1N1B4_2071 -1.2 -1.2 Protein phosphatase ImpM compare
Pf1N1B4_5393 -1.2 -1.8 hypothetical protein compare
Pf1N1B4_5527 -1.2 -2.8 hypothetical protein compare
Pf1N1B4_4679 -1.2 -3.5 outer membrane autotransporter compare
Pf1N1B4_2042 -1.2 -3.6 Phosphate regulon metal ion transporter containing CBS domains compare
Pf1N1B4_2054 -1.2 -1.7 FIG00964469: hypothetical protein compare
Pf1N1B4_4425 -1.2 -2.0 Aspartate aminotransferase (EC 2.6.1.1) compare
Pf1N1B4_1294 -1.2 -1.6 VgrG protein compare
Pf1N1B4_3108 -1.2 -5.1 S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) compare
Pf1N1B4_1128 -1.2 -2.2 hypothetical protein compare
Pf1N1B4_4494 -1.2 -1.6 hypothetical protein compare
Pf1N1B4_5863 -1.2 -1.2 Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE compare
Pf1N1B4_4776 -1.2 -1.3 Nicotinamidase (EC 3.5.1.19) compare
Pf1N1B4_3351 -1.2 -2.1 FIG00954302: hypothetical protein compare
Pf1N1B4_722 -1.2 -1.3 SAM-dependent methyltransferases compare
Pf1N1B4_4007 -1.2 -1.3 sigma-54 dependent transcriptional regulator compare
Pf1N1B4_5780 -1.2 -2.6 Nitrous oxide reductase maturation protein NosD compare
Pf1N1B4_5847 -1.2 -2.6 transcriptional activator FtrA compare
Pf1N1B4_5706 -1.2 -2.1 Fumarylacetoacetate hydrolase family protein compare
Pf1N1B4_4756 -1.2 -2.7 Magnesium and cobalt transport protein CorA compare
Pf1N1B4_5406 -1.2 -2.8 hypothetical protein compare
Pf1N1B4_981 -1.2 -2.6 UPF0246 protein YaaA compare
Pf1N1B4_4553 -1.2 -2.2 FIG00959354: hypothetical protein compare
Pf1N1B4_5939 -1.2 -1.9 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
Pf1N1B4_3415 -1.2 -2.5 Transcriptional regulator, TetR family compare
Pf1N1B4_2706 -1.2 -1.6 FIG00954871: hypothetical protein compare
Pf1N1B4_3717 -1.2 -2.3 Permeases of the major facilitator superfamily compare
Pf1N1B4_5568 -1.2 -1.3 hypothetical protein compare
Pf1N1B4_341 -1.2 -3.3 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Pf1N1B4_688 -1.2 -2.2 FIG00955483: hypothetical protein compare
Pf1N1B4_3967 -1.1 -2.4 AFG1-like ATPase compare
Pf1N1B4_5584 -1.1 -1.5 Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3) compare
Pf1N1B4_4731 -1.1 -1.7 Sigma-54 dependent transcriptional regulator compare
Pf1N1B4_5718 -1.1 -1.7 Transcriptional regulator, Cro/CI family compare
Pf1N1B4_5888 -1.1 -2.1 probable polysaccharide biosynthesis protein compare
Pf1N1B4_4717 -1.1 -0.9 Agmatinase (EC 3.5.3.11) compare
Pf1N1B4_188 -1.1 -1.4 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_5709 -1.1 -1.4 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) compare
Pf1N1B4_2484 -1.1 -1.9 hypothetical protein compare
Pf1N1B4_3466 -1.1 -1.7 FIG00955605: hypothetical protein compare
Pf1N1B4_1805 -1.1 -3.0 PROBABLE REMNANT OF A TRANSPOSASE GENE PROTEIN compare
Pf1N1B4_5862 -1.1 -2.1 Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD compare
Pf1N1B4_2072 -1.1 -2.9 Phosphoprotein phosphatase PppA compare
Pf1N1B4_5464 -1.1 -1.9 Cointegrate resolution protein T compare
Pf1N1B4_5819 -1.1 -3.1 FIG00954356: hypothetical protein compare
Pf1N1B4_2014 -1.1 -2.9 Homocysteine S-methyltransferase (EC 2.1.1.10) compare


Specific Phenotypes

For 1 genes in this experiment