Experiment set5IT019 for Pseudomonas fluorescens FW300-N1B4

Compare to:

LB 37C

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_3811 -4.3 -2.9 Hydantoin racemase (EC 5.1.99.-) compare
Pf1N1B4_899 -4.3 -2.1 DNA polymerase III chi subunit (EC 2.7.7.7) compare
Pf1N1B4_3866 -4.2 -1.5 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
Pf1N1B4_1008 -4.2 -2.1 FIG006045: Sigma factor, ECF subfamily compare
Pf1N1B4_1637 -3.9 -2.1 FIG00954739: hypothetical protein compare
Pf1N1B4_5512 -3.8 -1.9 hypothetical protein compare
Pf1N1B4_128 -3.6 -3.0 Methylglyoxal reductase, acetol producing (EC 1.1.1.-) / 2,5-diketo-D-gluconic acid reductase B (EC 1.1.1.274) compare
Pf1N1B4_617 -3.6 -2.0 Carbamate kinase (EC 2.7.2.2) compare
Pf1N1B4_501 -3.6 -2.2 Flp pilus assembly protein RcpC/CpaB compare
Pf1N1B4_799 -3.6 -1.9 hypothetical protein compare
Pf1N1B4_1993 -3.5 -1.2 C4-type zinc finger protein, DksA/TraR family compare
Pf1N1B4_967 -3.5 -1.9 hypothetical protein compare
Pf1N1B4_4429 -3.4 -1.9 No significant database matches compare
Pf1N1B4_4250 -3.4 -1.8 Methyltransferase (EC 2.1.1.-) compare
Pf1N1B4_4111 -3.3 -2.5 Panthothenate synthetase compare
Pf1N1B4_5722 -3.3 -1.8 Periplasmic protein p19 involved in high-affinity Fe2+ transport compare
Pf1N1B4_4337 -3.3 -2.1 Transcriptional regulator compare
Pf1N1B4_516 -3.2 -3.0 Sensor histidine kinase compare
Pf1N1B4_1721 -3.2 -2.7 DNA-binding heavy metal response regulator compare
Pf1N1B4_4446 -3.2 -2.1 DNA topoisomerase III (EC 5.99.1.2) compare
Pf1N1B4_4736 -3.1 -2.0 Fap amyloid fibril minor component compare
Pf1N1B4_5604 -3.1 -2.9 Permeases of the major facilitator superfamily compare
Pf1N1B4_5371 -3.0 -1.7 hypothetical protein compare
Pf1N1B4_2912 -3.0 -2.1 GTP-binding and nucleic acid-binding protein YchF compare
Pf1N1B4_629 -3.0 -1.8 Queuosine Biosynthesis QueE Radical SAM compare
Pf1N1B4_5763 -3.0 -2.4 Nitric oxide reductase activation protein NorQ compare
Pf1N1B4_4952 -2.9 -2.3 L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1) compare
Pf1N1B4_4611 -2.9 -2.6 GlpG protein (membrane protein of glp regulon) compare
Pf1N1B4_1683 -2.9 -1.9 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) compare
Pf1N1B4_5239 -2.9 -2.8 hypothetical protein compare
Pf1N1B4_3997 -2.9 -4.6 Uncharacterized protein YtfM precursor compare
Pf1N1B4_1332 -2.9 -2.8 Cobalt-precorrin-6 synthase, anaerobic compare
Pf1N1B4_4866 -2.9 -2.3 hypothetical protein compare
Pf1N1B4_2177 -2.9 -1.0 FIG00953342: hypothetical protein compare
Pf1N1B4_675 -2.8 -2.9 hypothetical protein compare
Pf1N1B4_4100 -2.8 -3.1 probable transmembrane protein compare
Pf1N1B4_5620 -2.7 -2.0 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) compare
Pf1N1B4_101 -2.7 -1.8 hypothetical protein compare
Pf1N1B4_5575 -2.7 -2.4 hypothetical protein compare
Pf1N1B4_3692 -2.7 -3.4 Chaperone protein HtpG compare
Pf1N1B4_2464 -2.6 -3.4 Ribosomal protein S6 glutaminyl transferase compare
Pf1N1B4_4957 -2.6 -1.4 Transcriptional regulator, TetR family compare
Pf1N1B4_539 -2.6 -2.3 Transcriptional regulators compare
Pf1N1B4_5720 -2.6 -2.2 hypothetical protein compare
Pf1N1B4_886 -2.6 -2.4 FIG137478: Hypothetical protein compare
Pf1N1B4_5995 -2.6 -2.3 Transporter, MFS superfamily compare
Pf1N1B4_695 -2.6 -2.7 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf1N1B4_1695 -2.5 -1.8 Cystine ABC transporter, ATP-binding protein compare
Pf1N1B4_5013 -2.5 -1.5 Cointegrate resolution protein T compare
Pf1N1B4_3145 -2.5 -3.5 Decarboxylase family protein compare
Pf1N1B4_2853 -2.5 -2.0 Pantoate--beta-alanine ligase (EC 6.3.2.1) compare
Pf1N1B4_324 -2.5 -2.1 Glycosyl transferase, group 2 family protein compare
Pf1N1B4_4437 -2.5 -2.4 hypothetical protein compare
Pf1N1B4_5056 -2.4 -2.9 Uncharacterized glutathione S-transferase-like protein compare
Pf1N1B4_866 -2.4 -1.7 Iron-sulfur cluster regulator IscR compare
Pf1N1B4_3768 -2.4 -2.2 Homoserine/homoserine lactone efflux protein compare
Pf1N1B4_5447 -2.4 -2.2 hypothetical protein compare
Pf1N1B4_4352 -2.4 -2.1 Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2) compare
Pf1N1B4_4523 -2.4 -2.2 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_5991 -2.4 -2.2 Transcriptional regulator, AraC family compare
Pf1N1B4_4939 -2.4 -2.1 sodium/hydrogen exchanger family protein compare
Pf1N1B4_4667 -2.4 -2.1 Acriflavin resistance plasma membrane protein compare
Pf1N1B4_3222 -2.3 -1.8 Ferredoxin compare
Pf1N1B4_564 -2.3 -2.5 ABC-type phosphate/phosphonate transport system, periplasmic component compare
Pf1N1B4_5675 -2.3 -1.8 hypothetical protein compare
Pf1N1B4_808 -2.3 -5.5 hypothetical protein compare
Pf1N1B4_4299 -2.3 -2.7 sensor histidine kinase compare
Pf1N1B4_4636 -2.2 -1.7 TPR domain protein in aerotolerance operon compare
Pf1N1B4_3581 -2.2 -3.0 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf1N1B4_118 -2.2 -2.5 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily compare
Pf1N1B4_4867 -2.2 -2.9 FIG00464907: hypothetical protein compare
Pf1N1B4_5859 -2.2 -3.4 Glutamate carboxypeptidase (EC 3.4.17.11) compare
Pf1N1B4_407 -2.1 -1.7 ADP-ribosylglycohydrolase YegU (EC 3.2.-.-) compare
Pf1N1B4_2479 -2.1 -2.6 Glycine cleavage system transcriptional antiactivator GcvR compare
Pf1N1B4_1492 -2.1 -0.9 FIG00959437: hypothetical protein compare
Pf1N1B4_2061 -2.1 -2.9 hypothetical protein compare
Pf1N1B4_5972 -2.1 -2.5 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) compare
Pf1N1B4_4953 -2.1 -1.7 Selenocysteine-specific translation elongation factor compare
Pf1N1B4_1504 -2.1 -1.6 Acyl carrier protein compare
Pf1N1B4_5611 -2.1 -1.8 L-carnitine dehydratase/bile acid-inducible protein F (EC 2.8.3.16) compare
Pf1N1B4_4425 -2.1 -3.5 Aspartate aminotransferase (EC 2.6.1.1) compare
Pf1N1B4_5269 -2.1 -2.1 hypothetical protein compare
Pf1N1B4_614 -2.1 -3.4 Arginine/ornithine antiporter ArcD compare
Pf1N1B4_240 -2.1 -1.8 Transcriptional regulators compare
Pf1N1B4_5829 -2.0 -1.3 FIG005107: hypothetical protein compare
Pf1N1B4_3069 -2.0 -2.4 FIG00954614: hypothetical protein compare
Pf1N1B4_5870 -2.0 -2.3 VgrG protein compare
Pf1N1B4_158 -2.0 -2.3 FIG00456158: hypothetical protein compare
Pf1N1B4_5779 -2.0 -2.2 Nitrous oxide reductase maturation protein NosF (ATPase) compare
Pf1N1B4_3887 -2.0 -2.5 CAAX amino terminal protease family protein compare
Pf1N1B4_4566 -2.0 -2.3 Universal stress protein family 7 compare
Pf1N1B4_4330 -2.0 -3.0 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) compare
Pf1N1B4_1754 -1.9 -3.1 Putative stomatin/prohibitin-family membrane protease subunit aq_911 compare
Pf1N1B4_4627 -1.9 -1.4 FIG00957600: hypothetical protein compare
Pf1N1B4_4132 -1.9 -1.9 Mobile element protein compare
Pf1N1B4_3241 -1.9 -1.6 hypothetical protein compare
Pf1N1B4_2090 -1.9 -3.3 FIG00959590: hypothetical protein compare
Pf1N1B4_5472 -1.9 -2.9 hypothetical protein compare
Pf1N1B4_5043 -1.9 -2.2 hypothetical protein compare
Pf1N1B4_5386 -1.9 -1.7 hypothetical protein compare
Pf1N1B4_1671 -1.9 -2.6 FIG00954962: hypothetical protein compare
Pf1N1B4_919 -1.9 -1.5 hypothetical protein compare
Pf1N1B4_2891 -1.9 -3.1 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
Pf1N1B4_4198 -1.9 -2.0 4-hydroxybenzoate transporter compare
Pf1N1B4_5864 -1.9 -1.9 Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF compare
Pf1N1B4_1675 -1.9 -1.8 Transcriptional regulator compare
Pf1N1B4_3468 -1.8 -1.4 Negative regulator of flagellin synthesis FlgM compare
Pf1N1B4_6040 -1.8 -3.2 FIG00956858: hypothetical protein compare
Pf1N1B4_5631 -1.8 -2.3 Sigma-54 dependent transcriptional regulator compare
Pf1N1B4_5489 -1.8 -3.8 hypothetical protein compare
Pf1N1B4_4172 -1.8 -1.6 hypothetical protein compare
Pf1N1B4_4194 -1.8 -2.2 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) compare
Pf1N1B4_2106 -1.8 -2.7 Hydrogen peroxide-inducible genes activator compare
Pf1N1B4_1979 -1.8 -3.1 HflK protein compare
Pf1N1B4_5628 -1.8 -2.9 Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) compare
Pf1N1B4_13 -1.8 -2.8 SAM-dependent methyltransferase YafE (UbiE paralog) compare
Pf1N1B4_5353 -1.8 -3.4 hypothetical protein compare
Pf1N1B4_606 -1.8 -1.5 Iron siderophore sensor protein compare
Pf1N1B4_623 -1.8 -1.5 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
Pf1N1B4_3750 -1.8 -2.0 Potassium efflux system KefA protein / Small-conductance mechanosensitive channel compare
Pf1N1B4_763 -1.8 -3.1 Ferric iron ABC transporter, ATP-binding protein compare
Pf1N1B4_608 -1.7 -1.6 Heme oxygenase HemO, associated with heme uptake compare
Pf1N1B4_2359 -1.7 -2.1 Chemotaxis signal transduction protein compare
Pf1N1B4_3700 -1.7 -2.9 Putative permease often clustered with de novo purine synthesis compare
Pf1N1B4_4920 -1.7 -2.4 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf1N1B4_2437 -1.7 -3.5 Microsomal dipeptidase (EC 3.4.13.19) compare
Pf1N1B4_5089 -1.7 -2.4 Exopolysaccharide production protein ExoQ compare
Pf1N1B4_561 -1.7 -2.4 Glutathione S-transferase (EC 2.5.1.18) compare
Pf1N1B4_2484 -1.7 -1.8 hypothetical protein compare
Pf1N1B4_3547 -1.7 -1.1 DNA-binding response regulator compare
Pf1N1B4_5139 -1.7 -3.0 Gamma-aminobutyrate permease compare
Pf1N1B4_3636 -1.7 -1.3 FIG00953562: hypothetical protein compare
Pf1N1B4_135 -1.7 -3.2 Pyoverdine efflux carrier and ATP binding protein compare
Pf1N1B4_3091 -1.7 -2.9 Membrane-associated zinc metalloprotease compare
Pf1N1B4_612 -1.7 -2.8 DNA-3-methyladenine glycosylase II (EC 3.2.2.21) compare
Pf1N1B4_3745 -1.7 -2.3 Thiamin ABC transporter, transmembrane component compare
Pf1N1B4_4218 -1.7 -2.4 Multidrug resistance protein A compare
Pf1N1B4_1191 -1.7 -1.6 hypothetical protein compare
Pf1N1B4_4119 -1.7 -1.8 dioxygenase compare
Pf1N1B4_108 -1.7 -2.1 FIG00954456: hypothetical protein compare
Pf1N1B4_5912 -1.7 -2.4 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_4393 -1.7 -1.5 Ferredoxin reductase compare
Pf1N1B4_1367 -1.7 -2.9 Glycine cleavage system transcriptional activator compare
Pf1N1B4_4826 -1.7 -1.6 glutamine synthetase family protein compare
Pf1N1B4_4829 -1.7 -2.3 Membrane protein, putative compare
Pf1N1B4_1336 -1.7 -1.1 Putative multicopper oxidases compare
Pf1N1B4_3627 -1.7 -1.3 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf1N1B4_481 -1.7 -3.8 FIG00956241: hypothetical protein compare
Pf1N1B4_319 -1.7 -3.2 Transcriptional regulator, GntR family compare
Pf1N1B4_251 -1.7 -3.0 DNA-binding response regulator, LuxR family compare
Pf1N1B4_3339 -1.6 -4.5 Transcriptional regulator, LysR family compare
Pf1N1B4_5059 -1.6 -1.0 Transcriptional regulator, LysR family compare
Pf1N1B4_4594 -1.6 -1.3 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) compare
Pf1N1B4_3499 -1.6 -1.1 hypothetical protein compare
Pf1N1B4_5278 -1.6 -1.1 hypothetical protein compare
Pf1N1B4_4822 -1.6 -1.6 Paraquat-inducible protein A compare
Pf1N1B4_1011 -1.6 -3.6 ribosomal subunit interface protein, putative compare
Pf1N1B4_5425 -1.6 -1.5 DNA-binding protein HU-beta compare
Pf1N1B4_552 -1.6 -2.9 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) compare
Pf1N1B4_401 -1.6 -2.6 GCN5-related N-acetyltransferase (EC 2.3.1.57) compare
Pf1N1B4_124 -1.6 -1.4 Mechanosensitive ion channel compare
Pf1N1B4_5777 -1.6 -1.6 Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL compare
Pf1N1B4_1827 -1.6 -4.0 FIG00953482: hypothetical protein compare
Pf1N1B4_89 -1.6 -4.3 Uncharacterized GST-like protein yncG compare
Pf1N1B4_1750 -1.6 -1.5 Death on curing protein, Doc toxin compare
Pf1N1B4_4557 -1.6 -2.5 FIG00955691: hypothetical protein compare
Pf1N1B4_309 -1.6 -2.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_5146 -1.6 -1.3 Chromosome initiation inhibitor compare
Pf1N1B4_4491 -1.6 -2.5 ABC transporter permease protein compare
Pf1N1B4_5979 -1.5 -1.8 Ureidoglycolate/malate/sulfolactate dehydrogenase family (EC 1.1.1.-) compare
Pf1N1B4_1052 -1.5 -2.0 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Pf1N1B4_2360 -1.5 -1.6 hypothetical protein compare
Pf1N1B4_1461 -1.5 -2.3 Protein fixF compare
Pf1N1B4_4243 -1.5 -2.4 Alcohol dehydrogenase (EC 1.1.1.1) compare
Pf1N1B4_5513 -1.5 -2.2 hypothetical protein compare
Pf1N1B4_4487 -1.5 -1.4 FIG00955631: hypothetical protein compare
Pf1N1B4_2314 -1.5 -1.5 FIG028932: hypothetical protein compare
Pf1N1B4_1806 -1.5 -1.8 FIG00953743: hypothetical protein compare
Pf1N1B4_5639 -1.5 -3.1 D-serine deaminase (EC 4.3.1.18) compare
Pf1N1B4_2173 -1.5 -1.6 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf1N1B4_5812 -1.5 -2.1 FIG00955248: hypothetical protein compare
Pf1N1B4_3546 -1.5 -1.1 P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein compare
Pf1N1B4_3787 -1.5 -2.3 FIG00960829: hypothetical protein compare
Pf1N1B4_50 -1.5 -2.7 Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf1N1B4_5487 -1.5 -2.5 hypothetical protein compare
Pf1N1B4_15 -1.5 -2.9 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_4668 -1.5 -1.9 Heavy metal RND efflux outer membrane protein, CzcC family compare
Pf1N1B4_19 -1.5 -3.1 tRNA-dihydrouridine synthase C (EC 1.-.-.-) compare
Pf1N1B4_1057 -1.5 -1.4 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_5984 -1.4 -2.9 FIG005548: transport protein compare
Pf1N1B4_4336 -1.4 -1.2 FMN-dependent NADH-azoreductase compare
Pf1N1B4_119 -1.4 -3.6 Putative haemolysin/cytolysin secreted via TPS pathway compare
Pf1N1B4_1342 -1.4 -2.3 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_4127 -1.4 -2.0 hypothetical protein compare
Pf1N1B4_5960 -1.4 -2.7 Cytochrome b compare
Pf1N1B4_4903 -1.4 -2.2 ABC-type protease exporter, outer membrane component PrtF/AprF compare
Pf1N1B4_5916 -1.4 -1.6 Similar to non-heme chloroperoxidase, sll5080 homolog compare
Pf1N1B4_3168 -1.4 -1.9 AmpG permease compare
Pf1N1B4_4417 -1.4 -1.0 Transcriptional regulator compare
Pf1N1B4_5843 -1.4 -1.8 phospholipase/carboxylesterase family protein compare


Specific Phenotypes

For 1 genes in this experiment