Experiment set5IT018 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Sodium butyrate carbon source

200 most important genes:

  gene name fitness t score description  
AO353_27525 -4.6 -5.0 AraC family transcriptional regulator compare
AO353_07515 -4.5 -3.1 transporter compare
AO353_12085 -4.4 -9.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_12070 -4.3 -9.9 imidazoleglycerol-phosphate dehydratase compare
AO353_12365 -4.2 -5.0 phosphoribosyl-AMP cyclohydrolase compare
AO353_00430 -4.2 -5.0 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_02550 -4.1 -6.2 TetR family transcriptional regulator compare
AO353_14505 -4.0 -13.4 ketol-acid reductoisomerase compare
AO353_07230 -4.0 -18.8 anthranilate synthase compare
AO353_13165 -4.0 -7.2 ATP phosphoribosyltransferase regulatory subunit compare
AO353_20665 -4.0 -11.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_20635 -3.9 -14.9 3-isopropylmalate dehydrogenase compare
AO353_07210 -3.8 -6.4 indole-3-glycerol-phosphate synthase compare
AO353_07560 -3.8 -16.3 malate synthase G compare
AO353_05115 -3.8 -12.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_12115 -3.8 -2.6 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_20695 -3.7 -7.9 O-succinylhomoserine sulfhydrylase compare
AO353_27735 -3.7 -9.9 isocitrate lyase compare
AO353_07485 -3.7 -20.8 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) conserved
AO353_20625 -3.7 -6.1 3-isopropylmalate dehydratase compare
AO353_10025 -3.7 -17.1 pyruvate carboxylase subunit B compare
AO353_12515 -3.7 -23.6 glutamate synthase compare
AO353_05110 -3.7 -12.7 histidinol dehydrogenase compare
AO353_12500 -3.6 -2.5 shikimate kinase compare
AO353_08345 -3.6 -10.5 dihydroxy-acid dehydratase compare
AO353_02075 -3.6 -13.2 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_08180 -3.6 -14.9 homoserine O-acetyltransferase compare
AO353_10035 -3.5 -11.3 LysR family transcriptional regulator compare
AO353_10030 -3.5 -13.5 pyruvate carboxylase subunit A compare
AO353_08185 -3.4 -11.7 methionine biosynthesis protein MetW compare
AO353_06495 -3.4 -7.6 gamma-glutamyl phosphate reductase compare
AO353_12075 -3.4 -10.3 imidazole glycerol phosphate synthase subunit HisH compare
AO353_07215 -3.3 -9.7 anthranilate phosphoribosyltransferase compare
AO353_27535 -3.3 -4.4 3-hydroxybutyryl-CoA dehydrogenase compare
AO353_13070 -3.3 -10.2 phosphoserine phosphatase compare
AO353_01780 -3.3 -13.5 heat-shock protein Hsp90 compare
AO353_07155 -3.3 -7.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_07505 -3.3 -11.4 dethiobiotin synthetase compare
AO353_14495 -3.2 -13.3 acetolactate synthase 3 catalytic subunit compare
AO353_08015 -3.2 -8.3 5,10-methylenetetrahydrofolate reductase compare
AO353_10670 -3.2 -9.4 shikimate dehydrogenase compare
AO353_12090 -3.2 -3.1 imidazole glycerol phosphate synthase subunit HisF compare
AO353_07510 -3.1 -12.5 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_00750 -3.1 -6.2 GntR family transcriptional regulator compare
AO353_12520 -3.1 -11.8 glutamate synthase compare
AO353_14500 -3.1 -8.7 acetolactate synthase 3 regulatory subunit compare
AO353_07520 -3.1 -14.6 8-amino-7-oxononanoate synthase compare
AO353_02070 -3.1 -8.6 prephenate dehydratase compare
AO353_08045 -3.1 -17.0 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_20620 -3.0 -7.9 isopropylmalate isomerase compare
AO353_18780 -3.0 -8.5 cobyrinic acid a,c-diamide synthase compare
AO353_14420 -2.9 -5.2 molecular chaperone DnaK compare
AO353_04105 -2.9 -10.1 argininosuccinate synthase compare
AO353_10710 -2.9 -6.4 tryptophan synthase subunit beta compare
AO353_04155 -2.9 -13.4 ornithine carbamoyltransferase compare
AO353_20175 -2.9 -4.7 ATP-dependent Clp protease proteolytic subunit compare
AO353_07525 -2.8 -14.0 biotin synthase compare
AO353_12460 -2.8 -10.5 malate dehydrogenase compare
AO353_08685 -2.8 -9.7 N-acetylglutamate synthase compare
AO353_15925 -2.8 -11.6 2-isopropylmalate synthase compare
AO353_25685 -2.7 -9.2 acetyl-CoA:acetyl-CoA C-acetyltransferase / acetyl-CoA:propanoyl-CoA 2-C-acetyltransferase (EC 2.3.1.9; EC 2.3.1.16) (from data) compare
AO353_08510 -2.6 -6.3 3-phosphoglycerate dehydrogenase compare
AO353_25680 -2.6 -5.8 2-methylbutanoyl-CoA dehydrogenase / butanoyl-CoA dehydrogenase / isobutyryl-CoA dehydrogenase (EC 1.3.8.1; EC 1.3.8.5) (from data) compare
AO353_25695 -2.5 -10.7 AMP-binding protein compare
AO353_14385 -2.5 -6.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
AO353_01550 -2.5 -7.4 hypothetical protein compare
AO353_08165 -2.5 -4.4 pyrroline-5-carboxylate reductase compare
AO353_16310 -2.5 -9.5 phosphoenolpyruvate carboxylase compare
AO353_07645 -2.4 -1.9 sarcosine oxidase subunit gamma compare
AO353_27530 -2.4 -5.0 acetyl-CoA acetyltransferase compare
AO353_09000 -2.4 -6.7 argininosuccinate lyase compare
AO353_14115 -2.4 -7.9 gamma-glutamyl kinase compare
AO353_19060 -2.3 -6.6 CysB family transcriptional regulator compare
AO353_19090 -2.3 -3.1 MarR family transcriptional regulator compare
AO353_02685 -2.3 -5.0 phosphoribosylglycinamide formyltransferase compare
AO353_27675 -2.3 -9.7 ATP-dependent Clp protease ATP-binding subunit ClpA compare
AO353_01300 -2.3 -10.0 proteophosphoglycan precursor conserved
AO353_06040 -2.3 -4.7 exodeoxyribonuclease V subunit alpha compare
AO353_09240 -2.2 -4.0 acetylglutamate kinase compare
AO353_05075 -2.2 -10.7 adenylylsulfate kinase compare
AO353_05080 -2.2 -10.0 sulfate adenylyltransferase compare
AO353_02710 -2.1 -11.1 (p)ppGpp synthetase compare
AO353_10705 -2.0 -4.5 tryptophan synthase subunit alpha compare
AO353_00825 -2.0 -4.9 porin compare
AO353_22800 -2.0 -3.4 sulfite reductase compare
AO353_08885 -2.0 -13.3 polyphosphate kinase compare
AO353_27650 -2.0 -5.7 cell division protein FtsK compare
AO353_00310 -1.9 -10.0 transaldolase compare
AO353_20370 -1.9 -4.2 MerR family transcriptional regulator compare
AO353_20095 -1.9 -5.7 histidine kinase compare
AO353_14370 -1.9 -7.2 glucose-6-phosphate isomerase compare
AO353_07290 -1.8 -8.0 mannose-1-phosphate guanylyltransferase compare
AO353_14940 -1.8 -4.3 malate:quinone oxidoreductase compare
AO353_09840 -1.8 -6.2 chorismate--pyruvate lyase compare
AO353_24130 -1.7 -4.1 hypothetical protein compare
AO353_12345 -1.7 -2.8 twin-arginine protein translocation system subunit TatC compare
AO353_13140 -1.7 -6.2 tRNA dimethylallyltransferase compare
AO353_08130 -1.7 -3.5 uracil phosphoribosyltransferase compare
AO353_08780 -1.7 -5.3 5-formyltetrahydrofolate cyclo-ligase compare
AO353_19055 -1.6 -6.5 universal stress protein UspA compare
AO353_02810 -1.6 -7.6 histidine kinase compare
AO353_06050 -1.6 -7.0 exodeoxyribonuclease V subunit gamma compare
AO353_20185 -1.6 -6.5 DNA-binding protein compare
AO353_22945 -1.6 -9.3 glycogen branching protein compare
AO353_05625 -1.6 -1.9 transcription elongation factor GreA compare
AO353_11750 -1.5 -2.1 ATPase compare
AO353_07220 -1.5 -6.5 anthranilate synthase compare
AO353_18715 -1.5 -1.9 histidine kinase compare
AO353_09865 -1.5 -8.3 hypothetical protein compare
AO353_04220 -1.5 -4.1 chemotaxis protein CheY compare
AO353_24340 -1.5 -2.6 TetR family transcriptional regulator compare
AO353_00510 -1.5 -5.3 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_15250 -1.5 -3.5 cytochrome B compare
AO353_10430 -1.5 -3.9 chromosome partitioning protein ParB compare
AO353_08115 -1.4 -3.9 energy transducer TonB compare
AO353_04665 -1.4 -7.9 ATPase compare
AO353_16425 -1.4 -2.4 Fe-S metabolism protein SufE compare
AO353_13100 -1.4 -1.9 GTPase RsgA compare
AO353_12650 -1.4 -1.4 hypothetical protein compare
AO353_08475 -1.4 -6.3 phosphoserine phosphatase compare
AO353_10440 -1.4 -4.7 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
AO353_27540 -1.4 -3.4 TetR family transcriptional regulator compare
AO353_14400 -1.4 -4.2 Fis family transcriptional regulator compare
AO353_14380 -1.4 -3.2 pantoate--beta-alanine ligase compare
AO353_06045 -1.4 -5.6 exodeoxyribonuclease V subunit beta compare
AO353_13640 -1.3 -3.6 histidine kinase compare
AO353_02720 -1.3 -4.9 cysteine synthase compare
AO353_08100 -1.3 -2.7 chemotaxis protein CheY compare
AO353_13225 -1.3 -3.1 50S ribosomal protein L9 compare
AO353_19280 -1.3 -2.4 hypothetical protein compare
AO353_15830 -1.2 -2.7 transcriptional regulator compare
AO353_22810 -1.2 -1.4 hypothetical protein compare
AO353_02250 -1.2 -2.6 chorismate synthase compare
AO353_18540 -1.2 -2.3 pseudouridine synthase compare
AO353_11770 -1.2 -1.8 molecular chaperone Hsp33 compare
AO353_17205 -1.2 -2.4 beta-ketoadipyl CoA thiolase compare
AO353_15015 -1.2 -8.5 adhesin compare
AO353_11730 -1.2 -6.9 glutamate--cysteine ligase compare
AO353_05690 -1.2 -2.7 SsrA-binding protein compare
AO353_04035 -1.2 -3.1 exclusion suppressor FxsA compare
AO353_04355 -1.2 -1.9 homoserine dehydrogenase compare
AO353_03580 -1.2 -3.1 ATP-dependent DNA helicase RuvB compare
AO353_02835 -1.2 -3.8 chemotaxis protein CheY compare
AO353_00620 -1.1 -1.6 cytochrome C oxidase Cbb3 compare
AO353_00650 -1.1 -2.3 cytochrome biogenesis protein compare
AO353_06405 -1.1 -3.8 hypothetical protein compare
AO353_07315 -1.1 -1.7 rRNA methyltransferase compare
AO353_28990 -1.1 -4.7 LOG family protein compare
AO353_15725 -1.1 -2.7 hypothetical protein compare
AO353_09260 -1.1 -4.7 ribonuclease PH compare
AO353_10215 -1.1 -6.7 methyltransferase compare
AO353_20585 -1.1 -3.1 TetR family transcriptional regulator compare
AO353_12540 -1.1 -2.5 hypothetical protein compare
AO353_01190 -1.1 -1.8 hypothetical protein compare
AO353_13245 -1.0 -4.4 hypothetical protein compare
AO353_18010 -1.0 -5.6 hypothetical protein conserved
AO353_07325 -1.0 -1.8 diadenosine tetraphosphatase compare
AO353_15020 -1.0 -7.7 hypothetical protein conserved
AO353_00890 -1.0 -4.4 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
AO353_27685 -1.0 -3.8 cold-shock protein compare
AO353_16940 -1.0 -4.1 deoxycytidine triphosphate deaminase compare
AO353_24790 -1.0 -3.3 Cro/Cl family transcriptional regulator compare
AO353_27680 -1.0 -3.8 ATP-dependent Clp protease adaptor ClpS compare
AO353_19530 -1.0 -1.3 quinohemoprotein amine dehydrogenase compare
AO353_00355 -1.0 -1.8 transcriptional regulator compare
AO353_07075 -1.0 -3.3 elongation factor Tu compare
AO353_27665 -1.0 -5.6 arginyl-tRNA-protein transferase compare
AO353_03590 -1.0 -2.7 crossover junction endodeoxyribonuclease RuvC compare
AO353_19085 -1.0 -2.2 organic hydroperoxide resistance protein compare
AO353_09875 -1.0 -1.8 hypothetical protein compare
AO353_16530 -0.9 -1.2 ribonuclease HII compare
AO353_00170 -0.9 -1.6 lysozyme compare
AO353_14585 -0.9 -3.5 ribosomal-protein-alanine acetyltransferase compare
AO353_07355 -0.9 -4.2 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_26125 -0.9 -3.1 hypothetical protein compare
AO353_29215 -0.9 -1.4 alpha/beta hydrolase compare
AO353_01915 -0.9 -1.0 GlcG protein compare
AO353_23905 -0.9 -2.2 GntR family transcriptional regulator compare
AO353_02940 -0.9 -1.6 DNA-binding protein compare
AO353_25450 -0.9 -2.2 cyanate hydratase compare
AO353_18015 -0.9 -4.0 AAA family ATPase compare
AO353_10510 -0.9 -1.2 benzoate transporter compare
AO353_16195 -0.9 -1.2 DNA mismatch repair protein MutT compare
AO353_15560 -0.9 -2.8 Maleylacetoacetate isomerase (EC 5.2.1.2) (from data) compare
AO353_12360 -0.9 -5.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_08505 -0.9 -5.6 FAD-linked oxidase compare
AO353_04365 -0.9 -3.5 recombinase XerD compare
AO353_05130 -0.9 -1.7 anti-anti-sigma factor compare
AO353_20785 -0.9 -3.5 carbon storage regulator CsrA compare
AO353_27710 -0.9 -1.2 DNA repair protein compare
AO353_15555 -0.8 -3.0 fumarylacetoacetase compare
AO353_15410 -0.8 -0.9 hypothetical protein compare
AO353_26195 -0.8 -1.1 hypothetical protein compare
AO353_12420 -0.8 -2.4 predicted FeS cluster maintenance protein (from data) compare
AO353_26080 -0.8 -1.9 hypothetical protein compare
AO353_01975 -0.8 -3.9 glycosyl transferase compare
AO353_26050 -0.8 -2.2 hypothetical protein compare
AO353_06390 -0.8 -2.8 magnesium transporter compare
AO353_01405 -0.8 -3.9 23S rRNA pseudouridylate synthase compare
AO353_12240 -0.8 -2.7 histidine utilization repressor compare


Specific Phenotypes

For 20 genes in this experiment

For carbon source Sodium butyrate in Pseudomonas fluorescens FW300-N2E3

For carbon source Sodium butyrate across organisms