Experiment set5IT018 for Pseudomonas fluorescens FW300-N1B4

Compare to:

LB 30C

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_2621 -2.3 -3.1 PspA/IM30 family protein compare
Pf1N1B4_4038 -2.2 -3.6 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_2486 -2.2 -3.0 hypothetical protein compare
Pf1N1B4_1568 -2.1 -4.0 Twin-arginine translocation protein TatB compare
Pf1N1B4_3168 -2.1 -4.5 AmpG permease compare
Pf1N1B4_4029 -2.0 -4.2 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_1307 -1.8 -3.8 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_974 -1.6 -4.6 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf1N1B4_2005 -1.6 -1.9 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_3779 -1.5 -2.7 Hydrolase, alpha/beta fold family functionally coupled to Phosphoribulokinase compare
Pf1N1B4_2377 -1.5 -6.0 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf1N1B4_3869 -1.5 -11.7 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf1N1B4_578 -1.5 -3.2 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_339 -1.4 -2.7 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf1N1B4_3871 -1.4 -10.2 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf1N1B4_3870 -1.4 -11.1 Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion compare
Pf1N1B4_2493 -1.4 -2.5 Acyl-CoA dehydrogenase (EC 1.3.8.7) compare
Pf1N1B4_4041 -1.4 -3.9 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
Pf1N1B4_4030 -1.4 -2.6 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
Pf1N1B4_3917 -1.4 -2.9 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf1N1B4_3872 -1.3 -8.3 Putative analog of CcoH, COG3198 compare
Pf1N1B4_4028 -1.3 -3.7 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_1403 -1.2 -6.7 3'-to-5' exoribonuclease RNase R compare
Pf1N1B4_2284 -1.2 -4.5 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf1N1B4_961 -1.2 -9.5 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf1N1B4_6041 -1.2 -2.4 Carbon storage regulator compare
Pf1N1B4_1057 -1.2 -2.6 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_4040 -1.2 -2.6 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_2858 -1.1 -7.1 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_2874 -1.1 -2.0 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_1317 -1.1 -2.4 Sensor histidine kinase/response regulator compare
Pf1N1B4_2105 -1.1 -2.2 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_2853 -1.1 -2.0 Pantoate--beta-alanine ligase (EC 6.3.2.1) compare
Pf1N1B4_2939 -1.1 -3.9 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf1N1B4_1569 -1.1 -7.4 Twin-arginine translocation protein TatC compare
Pf1N1B4_3518 -1.1 -2.7 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_322 -1.1 -2.4 nucleotide sugar epimerase/dehydratase WbpM compare
Pf1N1B4_275 -1.1 -2.1 Organic hydroperoxide resistance transcriptional regulator compare
Pf1N1B4_962 -1.1 -6.3 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf1N1B4_3647 -1.0 -7.2 Cytochrome c heme lyase subunit CcmH compare
Pf1N1B4_958 -1.0 -2.6 Stringent starvation protein B compare
Pf1N1B4_960 -1.0 -6.8 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf1N1B4_4039 -1.0 -4.8 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_683 -1.0 -3.0 Fumarate hydratase class I, aerobic (EC 4.2.1.2) compare
Pf1N1B4_3991 -1.0 -2.0 Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family compare
Pf1N1B4_4839 -1.0 -1.6 lipoprotein compare
Pf1N1B4_2488 -1.0 -4.4 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf1N1B4_1430 -1.0 -2.9 Predicted signal transduction protein compare
Pf1N1B4_1565 -1.0 -3.2 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_1617 -1.0 -3.6 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_2912 -1.0 -2.1 GTP-binding and nucleic acid-binding protein YchF compare
Pf1N1B4_3998 -1.0 -3.6 putative exported protein compare
Pf1N1B4_381 -1.0 -2.2 hypothetical protein compare
Pf1N1B4_2026 -1.0 -2.7 Transcriptional regulator compare
Pf1N1B4_3819 -0.9 -4.0 Methylisocitrate lyase (EC 4.1.3.30) compare
Pf1N1B4_1458 -0.9 -4.2 Probable transcription regulator Mig-14 compare
Pf1N1B4_688 -0.9 -2.5 FIG00955483: hypothetical protein compare
Pf1N1B4_1266 -0.9 -1.9 hypothetical protein compare
Pf1N1B4_2856 -0.9 -2.8 Poly(A) polymerase (EC 2.7.7.19) compare
Pf1N1B4_1878 -0.9 -5.9 Cytochrome c4 compare
Pf1N1B4_1234 -0.9 -2.8 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_2227 -0.9 -2.0 FIG019278: hypothetical protein compare
Pf1N1B4_2224 -0.9 -2.1 FIG00953390: hypothetical protein compare
Pf1N1B4_4592 -0.9 -2.1 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) compare
Pf1N1B4_5357 -0.9 -2.1 hypothetical protein compare
Pf1N1B4_2233 -0.9 -5.1 Ferric iron ABC transporter, permease protein compare
Pf1N1B4_5269 -0.9 -2.1 hypothetical protein compare
Pf1N1B4_4474 -0.9 -2.5 transcription regulator protein compare
Pf1N1B4_875 -0.9 -1.9 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_2060 -0.9 -1.9 hypothetical protein compare
Pf1N1B4_335 -0.9 -6.2 Glycosyltransferase compare
Pf1N1B4_722 -0.9 -1.4 SAM-dependent methyltransferases compare
Pf1N1B4_3955 -0.9 -3.3 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) compare
Pf1N1B4_1827 -0.9 -3.1 FIG00953482: hypothetical protein compare
Pf1N1B4_338 -0.9 -2.1 Alpha-L-Rha alpha-1,3-L-rhamnosyltransferase (EC 2.4.1.-) compare
Pf1N1B4_5533 -0.9 -2.7 cobS protein, putative compare
Pf1N1B4_1593 -0.8 -2.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_1492 -0.8 -1.3 FIG00959437: hypothetical protein compare
Pf1N1B4_3821 -0.8 -4.2 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf1N1B4_3006 -0.8 -3.6 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf1N1B4_4035 -0.8 -2.0 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
Pf1N1B4_4250 -0.8 -1.9 Methyltransferase (EC 2.1.1.-) compare
Pf1N1B4_867 -0.8 -2.2 Serine acetyltransferase (EC 2.3.1.30) compare
Pf1N1B4_2071 -0.8 -1.2 Protein phosphatase ImpM compare
Pf1N1B4_2432 -0.8 -1.6 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf1N1B4_3990 -0.8 -2.9 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf1N1B4_4723 -0.8 -2.8 UPF0141 membrane protein YijP possibly required for phosphoethanolamine modification of lipopolysaccharide compare
Pf1N1B4_2283 -0.8 -1.6 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf1N1B4_1 -0.8 -1.6 Colicin V production protein compare
Pf1N1B4_2489 -0.8 -2.7 Biotin synthesis protein BioH compare
Pf1N1B4_3768 -0.8 -2.0 Homoserine/homoserine lactone efflux protein compare
Pf1N1B4_5554 -0.8 -1.2 hypothetical protein compare
Pf1N1B4_5864 -0.8 -1.4 Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF compare
Pf1N1B4_1906 -0.8 -2.5 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_2885 -0.8 -4.1 Paraquat-inducible protein A compare
Pf1N1B4_3795 -0.8 -1.0 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Pf1N1B4_1566 -0.8 -3.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_4755 -0.8 -2.7 ribosomal protein S6 glutaminyl transferase related protein compare
Pf1N1B4_1335 -0.8 -2.9 Copper metallochaperone, bacterial analog of Cox17 protein compare
Pf1N1B4_65 -0.8 -4.1 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf1N1B4_763 -0.8 -2.9 Ferric iron ABC transporter, ATP-binding protein compare
Pf1N1B4_1780 -0.8 -2.3 FIG00961586: hypothetical protein compare
Pf1N1B4_5051 -0.8 -1.5 Sensor protein DegS compare
Pf1N1B4_1236 -0.8 -3.8 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf1N1B4_2948 -0.8 -1.8 FIG00954698: hypothetical protein compare
Pf1N1B4_866 -0.8 -1.2 Iron-sulfur cluster regulator IscR compare
Pf1N1B4_3143 -0.8 -2.7 RecA protein compare
Pf1N1B4_3499 -0.8 -1.8 hypothetical protein compare
Pf1N1B4_2021 -0.8 -1.8 hypothetical protein compare
Pf1N1B4_2695 -0.7 -1.7 Rare lipoprotein A precursor compare
Pf1N1B4_3751 -0.7 -1.0 FIG00953060: hypothetical protein compare
Pf1N1B4_1544 -0.7 -4.3 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_379 -0.7 -2.3 Protein of unknown function UPF0060 compare
Pf1N1B4_724 -0.7 -2.5 DNA-binding response regulator ColR compare
Pf1N1B4_5991 -0.7 -1.6 Transcriptional regulator, AraC family compare
Pf1N1B4_1679 -0.7 -1.0 Membrane-fusion protein compare
Pf1N1B4_1461 -0.7 -2.3 Protein fixF compare
Pf1N1B4_3833 -0.7 -4.2 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_2035 -0.7 -2.7 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf1N1B4_2359 -0.7 -1.9 Chemotaxis signal transduction protein compare
Pf1N1B4_188 -0.7 -1.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_4870 -0.7 -1.3 Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16) compare
Pf1N1B4_1654 -0.7 -2.8 hypothetical protein compare
Pf1N1B4_4833 -0.7 -2.0 DNA-binding response regulator, LuxR family compare
Pf1N1B4_3200 -0.7 -1.8 Outer membrane lipoprotein compare
Pf1N1B4_3325 -0.7 -1.2 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf1N1B4_2296 -0.7 -2.3 FIG00350678: hypothetical protein compare
Pf1N1B4_3491 -0.7 -2.0 tRNA(Cytosine32)-2-thiocytidine synthetase compare
Pf1N1B4_2891 -0.7 -2.2 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
Pf1N1B4_327 -0.7 -1.6 hypothetical protein compare
Pf1N1B4_2487 -0.7 -3.9 Biotin synthase (EC 2.8.1.6) compare
Pf1N1B4_5674 -0.6 -2.2 Strictosidine synthase precursor (EC 4.3.3.2) compare
Pf1N1B4_1570 -0.6 -2.0 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) compare
Pf1N1B4_298 -0.6 -2.2 Transcription elongation factor GreB compare
Pf1N1B4_652 -0.6 -4.4 Sensory box histidine kinase compare
Pf1N1B4_29 -0.6 -1.9 FIG00967200: hypothetical protein compare
Pf1N1B4_3684 -0.6 -3.0 Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) compare
Pf1N1B4_716 -0.6 -2.4 Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites compare
Pf1N1B4_1463 -0.6 -3.9 hypothetical protein compare
Pf1N1B4_5340 -0.6 -1.9 hypothetical protein compare
Pf1N1B4_3709 -0.6 -2.4 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
Pf1N1B4_4715 -0.6 -1.7 Transcriptional regulator compare
Pf1N1B4_2859 -0.6 -4.9 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf1N1B4_1094 -0.6 -1.8 FIG005080: Possible exported protein compare
Pf1N1B4_2949 -0.6 -1.1 FIG00956396: hypothetical protein compare
Pf1N1B4_1374 -0.6 -1.6 HupE-UreJ family metal transporter compare
Pf1N1B4_1408 -0.6 -2.2 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_2709 -0.6 -2.1 Magnesium and cobalt efflux protein CorC compare
Pf1N1B4_4134 -0.6 -1.8 Na+ driven multidrug efflux pump compare
Pf1N1B4_4140 -0.6 -1.4 hypothetical protein compare
Pf1N1B4_828 -0.6 -3.1 Multicopper oxidase compare
Pf1N1B4_2453 -0.6 -1.6 hypothetical protein compare
Pf1N1B4_5071 -0.6 -1.9 FIG00959535: hypothetical protein compare
Pf1N1B4_2773 -0.6 -2.6 COG0523: Putative GTPases (G3E family) compare
Pf1N1B4_1870 -0.6 -1.4 Zinc ABC transporter, ATP-binding protein ZnuC compare
Pf1N1B4_5498 -0.6 -1.4 hypothetical protein compare
Pf1N1B4_108 -0.6 -1.7 FIG00954456: hypothetical protein compare
Pf1N1B4_4671 -0.6 -1.9 Short-chain dehydrogenase/reductase SDR compare
Pf1N1B4_4533 -0.6 -1.6 Uncharacterized protein ImpH/VasB compare
Pf1N1B4_4931 -0.6 -0.9 Glutarate-semialdehyde dehydrogenase (EC 1.2.1.20); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.79) compare
Pf1N1B4_197 -0.6 -1.6 FIG139991: Putative thiamine pyrophosphate-requiring enzyme compare
Pf1N1B4_4487 -0.6 -1.7 FIG00955631: hypothetical protein compare
Pf1N1B4_2490 -0.6 -2.7 Biotin synthesis protein BioC compare
Pf1N1B4_1294 -0.6 -1.3 VgrG protein compare
Pf1N1B4_1750 -0.6 -1.2 Death on curing protein, Doc toxin compare
Pf1N1B4_5105 -0.6 -1.8 Peptide ABC transporter, ATP-binding protein compare
Pf1N1B4_6024 -0.6 -2.1 FIG00953292: hypothetical protein compare
Pf1N1B4_3997 -0.6 -2.8 Uncharacterized protein YtfM precursor compare
Pf1N1B4_3631 -0.6 -2.3 Flagellar motor rotation protein MotA compare
Pf1N1B4_2350 -0.6 -1.5 UPF0301 protein YqgE compare
Pf1N1B4_5023 -0.6 -2.4 Alkylated DNA repair protein AlkB compare
Pf1N1B4_767 -0.6 -2.3 Glycerol kinase (EC 2.7.1.30) compare
Pf1N1B4_1838 -0.6 -1.8 FIG00955509: hypothetical protein compare
Pf1N1B4_5095 -0.6 -1.2 hypothetical protein compare
Pf1N1B4_4446 -0.6 -1.5 DNA topoisomerase III (EC 5.99.1.2) compare
Pf1N1B4_3861 -0.6 -2.8 FIG00953368: hypothetical protein compare
Pf1N1B4_3892 -0.6 -2.8 Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps compare
Pf1N1B4_3906 -0.6 -1.7 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_3489 -0.6 -2.6 Protein sprT compare
Pf1N1B4_3111 -0.6 -1.0 tRNA pseudouridine 13 synthase (EC 4.2.1.-) compare
Pf1N1B4_76 -0.6 -1.7 ATP binding protein compare
Pf1N1B4_1946 -0.6 -2.3 Transcriptional regulator of glmS gene, DeoR family compare
Pf1N1B4_3656 -0.6 -1.1 Eukaryotic-type low-affinity urea transporter compare
Pf1N1B4_5447 -0.6 -1.4 hypothetical protein compare
Pf1N1B4_4336 -0.5 -1.5 FMN-dependent NADH-azoreductase compare
Pf1N1B4_216 -0.5 -2.1 Sigma factor PvdS, controling pyoverdin biosynthesis compare
Pf1N1B4_3840 -0.5 -1.9 Response regulator NasT compare
Pf1N1B4_4593 -0.5 -2.7 ABC transporter, periplasmic substrate-binding protein compare
Pf1N1B4_4219 -0.5 -1.5 FIG01074225: hypothetical protein compare
Pf1N1B4_5013 -0.5 -1.8 Cointegrate resolution protein T compare
Pf1N1B4_3692 -0.5 -1.9 Chaperone protein HtpG compare
Pf1N1B4_3874 -0.5 -2.5 Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation compare
Pf1N1B4_1115 -0.5 -3.9 Dna binding response regulator PrrA (RegA) compare
Pf1N1B4_4145 -0.5 -1.3 hypothetical protein compare
Pf1N1B4_340 -0.5 -3.5 Alpha-L-Rha alpha-1,3-L-rhamnosyltransferase (EC 2.4.1.-) compare
Pf1N1B4_6030 -0.5 -2.3 Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1) compare
Pf1N1B4_1059 -0.5 -1.0 FIG137478: Hypothetical protein YbgI compare
Pf1N1B4_350 -0.5 -3.0 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_617 -0.5 -0.8 Carbamate kinase (EC 2.7.2.2) compare
Pf1N1B4_4179 -0.5 -1.7 phosphoribosyltransferase compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N1B4 in temperature experiments