Experiment set5IT018 for Pantoea sp. MT58

Compare to:

Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_08085 -4.1 -4.0 helix-turn-helix domain-containing protein compare
IAI47_16995 -3.7 -2.3 protein YrbN compare
IAI47_12790 -3.7 -1.0 chromosome partition protein MukE compare
IAI47_10835 -3.2 -1.6 tRNA-Val compare
IAI47_11310 -2.6 -4.2 redox-regulated ATPase YchF compare
IAI47_01365 -2.6 -1.8 inorganic phosphate transporter PitA compare
IAI47_05070 -2.6 -0.7 outer membrane protein assembly factor BamB compare
IAI47_00870 -2.5 -1.0 50S ribosomal protein L31 compare
IAI47_02345 -2.5 -1.3 5S ribosomal RNA compare
IAI47_09580 -2.4 -3.6 FNR family transcription factor compare
IAI47_07165 -2.3 -2.7 exodeoxyribonuclease I compare
IAI47_06415 -2.2 -4.5 NADH-quinone oxidoreductase subunit M compare
IAI47_04300 -2.1 -7.5 recombinase RecA compare
IAI47_06325 -2.1 -6.0 acetate kinase compare
IAI47_03375 -2.1 -9.1 peptide chain release factor 3 compare
IAI47_09235 -2.1 -1.7 type I DNA topoisomerase compare
IAI47_07905 -2.0 -0.8 Arc family DNA-binding protein compare
IAI47_18530 -2.0 -3.6 thioredoxin TrxA compare
IAI47_18400 -2.0 -1.9 tyrosine recombinase XerC compare
IAI47_06390 -2.0 -2.4 NADH-quinone oxidoreductase subunit NuoH compare
IAI47_11515 -2.0 -1.3 hypothetical protein compare
IAI47_15595 -2.0 -1.8 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
IAI47_06245 -1.9 -4.3 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_00875 -1.9 -1.9 met regulon transcriptional regulator MetJ compare
IAI47_05425 -1.9 -4.5 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_07550 -1.9 -1.2 tRNA-Asn compare
IAI47_12880 -1.9 -12.6 formate C-acetyltransferase compare
IAI47_11415 -1.9 -1.7 hypothetical protein compare
IAI47_09055 -1.9 -9.7 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_13885 -1.9 -1.2 N-acetylglucosamine-6-phosphate deacetylase compare
IAI47_00780 -1.8 -3.7 6-phosphofructokinase compare
IAI47_08435 -1.8 -4.2 YebC/PmpR family DNA-binding transcriptional regulator compare
IAI47_04400 -1.8 -4.8 3-deoxy-7-phosphoheptulonate synthase compare
IAI47_17965 -1.8 -10.1 glucose-6-phosphate isomerase compare
IAI47_12885 -1.8 -5.2 pyruvate formate lyase 1-activating protein compare
IAI47_15605 -1.7 -1.4 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
IAI47_11450 -1.7 -4.5 ankyrin repeat domain-containing protein compare
IAI47_13545 -1.7 -8.9 6-phosphogluconolactonase compare
IAI47_18830 -1.7 -0.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_04425 -1.7 -7.8 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
IAI47_10840 -1.7 -4.2 pyruvate kinase PykF compare
IAI47_11760 -1.6 -1.0 TonB-dependent siderophore receptor compare
IAI47_04895 -1.6 -3.8 pyridoxine 5'-phosphate synthase compare
IAI47_13695 -1.5 -0.4 colicin uptake protein TolR compare
IAI47_17005 -1.5 -5.0 polyribonucleotide nucleotidyltransferase compare
IAI47_04835 -1.5 -6.4 ATP-dependent RNA helicase SrmB compare
IAI47_16990 -1.5 -3.1 DEAD/DEAH family ATP-dependent RNA helicase compare
IAI47_07040 -1.5 -3.8 acyltransferase compare
IAI47_15005 -1.4 -1.5 hypothetical protein compare
IAI47_15485 -1.4 -1.1 molecular chaperone Skp compare
IAI47_15635 -1.4 -2.3 RNA polymerase-binding protein DksA compare
IAI47_06455 -1.4 -4.8 ribonucleoside-diphosphate reductase subunit alpha compare
IAI47_14075 -1.4 -1.7 transcription antiterminator/RNA stability regulator CspE compare
IAI47_18415 -1.3 -3.2 lipoprotein compare
IAI47_17035 -1.3 -1.8 ribosome maturation factor RimP compare
IAI47_06320 -1.3 -5.4 phosphate acetyltransferase compare
IAI47_11500 -1.3 -2.4 type VI secretion system tip protein VgrG compare
IAI47_18215 -1.3 -1.3 Trk system potassium transporter TrkH compare
IAI47_00430 -1.3 -8.9 DNA polymerase I compare
IAI47_10320 -1.3 -0.9 Rrf2 family transcriptional regulator compare
IAI47_15995 -1.3 -2.0 leu operon leader peptide compare
IAI47_00460 -1.3 -1.5 glutamate--ammonia ligase compare
IAI47_18145 -1.2 -1.3 elongation factor Tu compare
IAI47_08855 -1.2 -4.0 septum site-determining protein MinC compare
IAI47_17120 -1.2 -1.2 BolA family iron metabolism protein IbaG compare
IAI47_02495 -1.2 -2.2 hypothetical protein compare
IAI47_20600 -1.2 -1.5 hypothetical protein compare
IAI47_06365 -1.2 -3.0 NADH-quinone oxidoreductase subunit B compare
IAI47_15810 -1.2 -2.5 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
IAI47_14470 -1.2 -1.6 YbaB/EbfC family nucleoid-associated protein compare
IAI47_11600 -1.1 -3.6 protein of avirulence locus ImpE compare
IAI47_03235 -1.1 -3.7 tol-pal system-associated acyl-CoA thioesterase compare
IAI47_00655 -1.1 -3.4 glycosyltransferase family 4 protein compare
IAI47_19295 -1.1 -2.7 hypothetical protein compare
IAI47_03680 -1.1 -5.7 transketolase compare
IAI47_15970 -1.1 -1.3 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
IAI47_05580 -1.1 -0.9 membrane protein YpdK compare
IAI47_01780 -1.0 -1.9 Fe-S biogenesis protein NfuA compare
IAI47_21730 -1.0 -3.1 hypothetical protein compare
IAI47_06380 -1.0 -2.0 NADH-quinone oxidoreductase subunit NuoF compare
IAI47_05475 -1.0 -2.5 FlxA-like family protein compare
IAI47_16085 -1.0 -1.0 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_02585 -1.0 -2.3 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
IAI47_00465 -1.0 -0.7 ribosome-dependent GTPase TypA compare
IAI47_06235 -0.9 -3.6 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_17385 -0.9 -1.8 CDP-alcohol phosphatidyltransferase family protein compare
IAI47_06420 -0.9 -3.0 NADH-quinone oxidoreductase subunit NuoN compare
IAI47_03135 -0.9 -3.6 outer membrane channel protein TolC compare
IAI47_11550 -0.9 -2.0 hypothetical protein compare
IAI47_10565 -0.9 -0.9 DUF4113 domain-containing protein compare
IAI47_16930 -0.9 -3.2 anaerobic ribonucleoside-triphosphate reductase-activating protein compare
IAI47_05195 -0.9 -1.1 DnaA inactivator Hda compare
IAI47_06240 -0.9 -3.6 aspartate-semialdehyde dehydrogenase compare
IAI47_01610 -0.9 -2.3 glycerophosphodiester phosphodiesterase compare
IAI47_18055 -0.9 -3.3 DNA-binding protein HU-alpha compare
IAI47_21035 -0.9 -1.8 TetR/AcrR family transcriptional regulator compare
IAI47_16925 -0.9 -5.9 anaerobic ribonucleoside-triphosphate reductase compare
IAI47_11195 -0.9 -2.8 SH3 domain-containing protein compare
IAI47_17185 -0.9 -3.8 RNA polymerase factor sigma-54 compare
IAI47_06475 -0.9 -2.9 transcriptional regulator RcsB compare
IAI47_13840 -0.8 -2.0 replication initiation negative regulator SeqA compare
IAI47_06400 -0.8 -1.6 NADH-quinone oxidoreductase subunit J compare
IAI47_04705 -0.8 -0.8 hypothetical protein compare
IAI47_17020 -0.8 -1.9 30S ribosome-binding factor RbfA compare
IAI47_18265 -0.8 -1.9 Sec-independent protein translocase subunit TatB compare
IAI47_14965 -0.8 -1.2 hypothetical protein compare
IAI47_11475 -0.8 -0.8 hypothetical protein compare
IAI47_09210 -0.8 -3.7 23S rRNA pseudouridine(2605) synthase RluB compare
IAI47_04870 -0.8 -2.5 elongation factor 4 compare
IAI47_04350 -0.8 -5.5 glutamate--cysteine ligase compare
IAI47_13700 -0.8 -1.3 Tol-Pal system protein TolQ compare
IAI47_03665 -0.8 -3.1 agmatinase compare
IAI47_12175 -0.8 -1.5 anti-sigma-28 factor FlgM compare
IAI47_12545 -0.8 -1.4 general stress protein compare
IAI47_13935 -0.8 -0.8 tRNA-Gln compare
IAI47_08600 -0.8 -2.7 TraR/DksA C4-type zinc finger protein compare
IAI47_03820 -0.8 -1.3 site-specific tyrosine recombinase XerD compare
IAI47_07275 -0.8 -2.8 DUF2058 domain-containing protein compare
IAI47_10755 -0.8 -1.0 DUF1289 domain-containing protein compare
IAI47_07950 -0.8 -3.1 YqaE/Pmp3 family membrane protein compare
IAI47_17900 -0.8 -0.8 glycerol-3-phosphate 1-O-acyltransferase PlsB compare
IAI47_09855 -0.8 -1.8 DUF2384 domain-containing protein compare
IAI47_17165 -0.8 -3.9 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
IAI47_07490 -0.8 -1.2 DNA-binding protein compare
IAI47_14920 -0.8 -2.7 pyrimidine/purine nucleoside phosphorylase compare
IAI47_19940 -0.7 -1.5 hypothetical protein compare
IAI47_13050 -0.7 -1.1 YbjN domain-containing protein compare
IAI47_11150 -0.7 -1.9 D-threitol dehydrogenase compare
IAI47_10795 -0.7 -2.8 HTH-type transcriptional repressor PurR compare
IAI47_01475 -0.7 -3.7 MurR/RpiR family transcriptional regulator compare
IAI47_16080 -0.7 -2.9 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_04950 -0.7 -3.4 nitrogen regulatory protein P-II compare
IAI47_19500 -0.7 -2.7 Insecticidal toxin complex protein tccz compare
IAI47_13195 -0.7 -3.5 DNA starvation/stationary phase protection protein Dps compare
IAI47_13480 -0.7 -1.4 molybdopterin synthase sulfur carrier subunit compare
IAI47_05770 -0.7 -1.9 hypothetical protein compare
IAI47_16195 -0.7 -3.9 transaldolase compare
IAI47_12375 -0.7 -0.6 acyl carrier protein compare
IAI47_07050 -0.7 -2.8 ABC transporter substrate-binding protein compare
IAI47_21115 -0.7 -1.5 arsenate reductase (glutaredoxin) compare
IAI47_08445 -0.7 -0.5 Holliday junction branch migration protein RuvA compare
IAI47_12030 -0.7 -4.6 PTS glucose transporter subunit IIBC compare
IAI47_13745 -0.7 -1.4 2-oxoglutarate dehydrogenase E1 component compare
IAI47_15920 -0.7 -2.4 D-alanine--D-alanine ligase compare
IAI47_21450 -0.7 -0.9 general stress protein compare
IAI47_15305 -0.7 -1.9 allantoin racemase compare
IAI47_08510 -0.7 -2.9 DUF533 domain-containing protein compare
IAI47_12865 -0.7 -3.9 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_19710 -0.7 -1.7 helix-turn-helix transcriptional regulator compare
IAI47_06565 -0.7 -1.2 YejL family protein compare
IAI47_02040 -0.7 -3.3 peptidylprolyl isomerase compare
IAI47_01180 -0.7 -0.9 prolyl oligopeptidase family serine peptidase compare
IAI47_18840 -0.7 -1.8 membrane protein insertion efficiency factor YidD compare
IAI47_02350 -0.7 -0.6 tRNA-Thr compare
IAI47_20850 -0.7 -1.5 TetR/AcrR family transcriptional regulator compare
IAI47_03555 -0.7 -2.5 oxidative damage protection protein compare
IAI47_02515 -0.7 -2.6 transcriptional regulator ArgR compare
IAI47_01005 -0.7 -4.3 DUF413 domain-containing protein compare
IAI47_02770 -0.7 -2.4 cytochrome b562 compare
IAI47_20555 -0.7 -2.3 ATP-binding cassette domain-containing protein compare
IAI47_07955 -0.7 -1.2 protein DsrB compare
IAI47_20690 -0.7 -1.6 ASCH domain-containing protein compare
IAI47_06410 -0.6 -2.4 NADH-quinone oxidoreductase subunit L compare
IAI47_13925 -0.6 -0.9 tRNA-Met compare
IAI47_06450 -0.6 -1.8 ribonucleotide-diphosphate reductase subunit beta compare
IAI47_05150 -0.6 -3.2 exopolyphosphatase compare
IAI47_04295 -0.6 -2.1 nicotinamide-nucleotide amidase compare
IAI47_09280 -0.6 -2.1 stress response translation initiation inhibitor YciH compare
IAI47_08605 -0.6 -1.0 hypothetical protein compare
IAI47_08755 -0.6 -1.6 DUF986 domain-containing protein compare
IAI47_15110 -0.6 -2.1 chromophore lyase compare
IAI47_00515 -0.6 -1.0 DNA-directed RNA polymerase subunit omega compare
IAI47_18705 -0.6 -3.7 mannitol-1-phosphate 5-dehydrogenase compare
IAI47_06965 -0.6 -0.6 glycosyltransferase family 2 protein compare
IAI47_06980 -0.6 -1.4 colanic acid biosynthesis pyruvyl transferase WcaK compare
IAI47_00300 -0.6 -0.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_09145 -0.6 -2.6 UPF0259 family protein compare
IAI47_09245 -0.6 -1.2 YmiA family putative membrane protein compare
IAI47_20300 -0.6 -2.2 hydrolase compare
IAI47_07525 -0.6 -1.0 conjugal transfer protein TraD compare
IAI47_12570 -0.6 -0.5 tRNA-Ser compare
IAI47_05975 -0.6 -1.9 NTP pyrophosphohydrolase compare
IAI47_18420 -0.6 -3.7 class I adenylate cyclase compare
IAI47_19990 -0.6 -2.8 aspartate aminotransferase family protein compare
IAI47_16935 -0.6 -2.5 NAD-dependent epimerase/dehydratase family protein compare
IAI47_11520 -0.6 -1.7 type VI secretion system tip protein VgrG compare
IAI47_06655 -0.6 -1.3 1-phosphofructokinase compare
IAI47_09040 -0.6 -0.6 NAD-dependent epimerase compare
IAI47_19080 -0.6 -1.8 hypothetical protein compare
IAI47_19600 -0.6 -1.3 ABC transporter ATP-binding protein compare
IAI47_06595 -0.6 -1.3 hypothetical protein compare
IAI47_01835 -0.6 -2.2 Hsp33 family molecular chaperone HslO compare
IAI47_16940 -0.6 -2.3 type 1 glutamine amidotransferase compare
IAI47_02790 -0.6 -2.7 DUF4311 domain-containing protein compare
IAI47_21390 -0.6 -1.5 hypothetical protein compare
IAI47_02380 -0.6 -0.7 DNA-binding transcriptional regulator Fis compare
IAI47_13950 -0.6 -0.6 PhoH family protein compare
IAI47_19780 -0.6 -2.5 TetR/AcrR family transcriptional regulator compare
IAI47_18715 -0.6 -0.6 YibL family ribosome-associated protein compare
IAI47_07760 -0.6 -1.4 phosphonate C-P lyase system protein PhnH compare


Specific Phenotypes

None in this experiment

For Pantoea sp. MT58 in survival experiments

For survival Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 across organisms