Experiment set5IT017 for Pseudomonas fluorescens FW300-N2E3

Compare to:

D-Mannose carbon source

200 most important genes:

  gene name fitness t score description  
AO353_23885 -5.4 -5.2 AraC family transcriptional regulator conserved
AO353_03400 -5.0 -8.3 D-mannose isomerase (EC 5.3.1.7) (from data) conserved
AO353_25910 -4.6 -7.7 Fructokinase (EC 2.7.1.4) (from data) conserved
AO353_07220 -4.5 -8.7 anthranilate synthase compare
AO353_20665 -4.5 -11.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_12070 -4.5 -9.9 imidazoleglycerol-phosphate dehydratase compare
AO353_07230 -4.4 -18.0 anthranilate synthase compare
AO353_20625 -4.4 -5.2 3-isopropylmalate dehydratase compare
AO353_05485 -4.4 -10.6 Fructose-specific PTS system, I, HPr, and IIA components (from data) conserved
AO353_13070 -4.3 -9.2 phosphoserine phosphatase compare
AO353_05115 -4.3 -12.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_02075 -4.3 -13.4 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_20695 -4.2 -8.5 O-succinylhomoserine sulfhydrylase compare
AO353_05475 -4.2 -17.4 PTS fructose transporter subunit IIBC conserved
AO353_14505 -4.2 -14.0 ketol-acid reductoisomerase compare
AO353_12085 -4.1 -10.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_12520 -4.1 -14.3 glutamate synthase compare
AO353_13165 -4.0 -7.3 ATP phosphoribosyltransferase regulatory subunit compare
AO353_12515 -4.0 -24.0 glutamate synthase compare
AO353_07215 -4.0 -8.6 anthranilate phosphoribosyltransferase compare
AO353_03410 -4.0 -4.0 chemotaxis protein CheY compare
AO353_20635 -4.0 -15.4 3-isopropylmalate dehydrogenase compare
AO353_10710 -4.0 -3.9 tryptophan synthase subunit beta compare
AO353_12090 -4.0 -2.7 imidazole glycerol phosphate synthase subunit HisF compare
AO353_10025 -3.9 -16.9 pyruvate carboxylase subunit B compare
AO353_14370 -3.9 -8.3 glucose-6-phosphate isomerase compare
AO353_14500 -3.8 -7.7 acetolactate synthase 3 regulatory subunit compare
AO353_08180 -3.8 -15.1 homoserine O-acetyltransferase compare
AO353_07515 -3.8 -3.7 transporter compare
AO353_12500 -3.8 -2.6 shikimate kinase compare
AO353_14115 -3.7 -8.3 gamma-glutamyl kinase compare
AO353_20620 -3.7 -8.7 isopropylmalate isomerase compare
AO353_08510 -3.7 -6.6 3-phosphoglycerate dehydrogenase compare
AO353_03360 -3.7 -10.5 glucose-6-phosphate dehydrogenase compare
AO353_14400 -3.7 -5.0 Fis family transcriptional regulator compare
AO353_08185 -3.6 -11.8 methionine biosynthesis protein MetW compare
AO353_08345 -3.6 -11.4 dihydroxy-acid dehydratase compare
AO353_00310 -3.6 -11.7 transaldolase compare
AO353_25895 -3.6 -7.2 ABC transporter ATP-binding protein conserved
AO353_02070 -3.6 -8.9 prephenate dehydratase compare
AO353_14495 -3.6 -13.2 acetolactate synthase 3 catalytic subunit compare
AO353_05110 -3.6 -13.3 histidinol dehydrogenase compare
AO353_09000 -3.6 -5.9 argininosuccinate lyase compare
AO353_12360 -3.6 -10.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_08685 -3.6 -9.5 N-acetylglutamate synthase compare
AO353_10030 -3.6 -13.8 pyruvate carboxylase subunit A compare
AO353_20540 -3.5 -9.4 aromatic amino acid aminotransferase compare
AO353_12075 -3.5 -10.5 imidazole glycerol phosphate synthase subunit HisH compare
AO353_10035 -3.4 -9.8 LysR family transcriptional regulator compare
AO353_08475 -3.3 -11.6 phosphoserine phosphatase compare
AO353_10670 -3.3 -9.6 shikimate dehydrogenase compare
AO353_08015 -3.3 -8.8 5,10-methylenetetrahydrofolate reductase compare
AO353_07210 -3.2 -6.5 indole-3-glycerol-phosphate synthase compare
AO353_02710 -3.2 -14.8 (p)ppGpp synthetase compare
AO353_07525 -3.2 -16.2 biotin synthase compare
AO353_04105 -3.2 -10.3 argininosuccinate synthase compare
AO353_25880 -3.1 -13.4 sugar ABC transporter substrate-binding protein conserved
AO353_09240 -3.1 -3.0 acetylglutamate kinase compare
AO353_08780 -3.1 -9.4 5-formyltetrahydrofolate cyclo-ligase compare
AO353_07155 -3.1 -8.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_04155 -3.0 -14.7 ornithine carbamoyltransferase compare
AO353_22800 -3.0 -5.1 sulfite reductase compare
AO353_02685 -2.9 -5.2 phosphoribosylglycinamide formyltransferase compare
AO353_06495 -2.9 -6.7 gamma-glutamyl phosphate reductase compare
AO353_15925 -2.9 -12.1 2-isopropylmalate synthase compare
AO353_09915 -2.8 -8.8 long-chain acyl-CoA thioester hydrolase compare
AO353_12365 -2.8 -4.2 phosphoribosyl-AMP cyclohydrolase compare
AO353_03395 -2.8 -10.4 sugar ABC transporter substrate-binding protein conserved
AO353_05080 -2.7 -13.8 sulfate adenylyltransferase compare
AO353_03580 -2.7 -5.1 ATP-dependent DNA helicase RuvB compare
AO353_14595 -2.7 -11.6 carbonate dehydratase compare
AO353_26900 -2.7 -6.8 glycerate kinase compare
AO353_08465 -2.6 -14.5 phosphoenolpyruvate-protein phosphotransferase compare
AO353_20660 -2.6 -6.0 pseudouridine synthase compare
AO353_07505 -2.6 -10.6 dethiobiotin synthetase compare
AO353_16940 -2.6 -7.3 deoxycytidine triphosphate deaminase compare
AO353_03380 -2.5 -7.7 sugar ABC transporter ATP-binding protein conserved
AO353_08165 -2.5 -4.4 pyrroline-5-carboxylate reductase compare
AO353_12115 -2.5 -3.5 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_25900 -2.4 -5.6 mannitol dehydrogenase conserved
AO353_08045 -2.4 -13.9 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_03390 -2.3 -13.0 sugar ABC transporter permease conserved
AO353_14420 -2.3 -6.0 molecular chaperone DnaK compare
AO353_10705 -2.2 -5.5 tryptophan synthase subunit alpha compare
AO353_03590 -2.2 -4.9 crossover junction endodeoxyribonuclease RuvC compare
AO353_05075 -2.2 -10.5 adenylylsulfate kinase compare
AO353_25885 -2.2 -6.1 sugar ABC transporter permease conserved
AO353_02250 -2.2 -4.4 chorismate synthase compare
AO353_07510 -2.2 -11.0 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_07520 -2.2 -11.4 8-amino-7-oxononanoate synthase compare
AO353_25890 -2.2 -9.5 sugar ABC transporter permease conserved
AO353_19145 -2.1 -5.5 protease HtpX compare
AO353_19060 -2.1 -6.3 CysB family transcriptional regulator compare
AO353_15725 -2.1 -6.0 hypothetical protein compare
AO353_13140 -2.0 -7.1 tRNA dimethylallyltransferase compare
AO353_21625 -2.0 -3.2 Fe/S biogenesis protein NfuA compare
AO353_00825 -2.0 -4.9 porin compare
AO353_11775 -2.0 -7.9 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_03020 -1.9 -7.3 arginine N-succinyltransferase compare
AO353_03385 -1.9 -8.9 sugar ABC transporter permease conserved
AO353_09060 -1.9 -3.7 hypothetical protein compare
AO353_06040 -1.9 -4.5 exodeoxyribonuclease V subunit alpha compare
AO353_08470 -1.9 -4.4 RNA pyrophosphohydrolase compare
AO353_20175 -1.8 -3.8 ATP-dependent Clp protease proteolytic subunit compare
AO353_12105 -1.8 -7.1 peptidase S41 compare
AO353_05145 -1.8 -6.2 ABC transporter permease compare
AO353_04565 -1.7 -6.4 nucleoid-associated protein compare
AO353_03425 -1.7 -9.4 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_07075 -1.7 -5.9 elongation factor Tu compare
AO353_20170 -1.6 -5.7 trigger factor compare
AO353_24130 -1.6 -3.3 hypothetical protein compare
AO353_18540 -1.6 -3.2 pseudouridine synthase compare
AO353_00750 -1.6 -2.9 GntR family transcriptional regulator compare
AO353_02000 -1.6 -4.4 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_03585 -1.6 -3.4 ATP-dependent DNA helicase RuvA compare
AO353_08265 -1.6 -6.0 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_05150 -1.6 -4.5 ABC transporter ATP-binding protein compare
AO353_09250 -1.6 -2.9 exodeoxyribonuclease III compare
AO353_11165 -1.5 -7.6 hypothetical protein compare
AO353_11730 -1.5 -8.2 glutamate--cysteine ligase compare
AO353_12510 -1.5 -7.8 cell division protein compare
AO353_14740 -1.5 -4.2 GTP-binding protein compare
AO353_06045 -1.4 -6.3 exodeoxyribonuclease V subunit beta compare
AO353_09275 -1.4 -3.6 DNA-directed RNA polymerase subunit omega compare
AO353_08350 -1.4 -7.0 hypothetical protein compare
AO353_06050 -1.4 -6.5 exodeoxyribonuclease V subunit gamma compare
AO353_05135 -1.4 -8.0 toluene tolerance protein compare
AO353_23245 -1.4 -3.2 DNA-3-methyladenine glycosylase compare
AO353_04355 -1.4 -2.0 homoserine dehydrogenase compare
AO353_04220 -1.4 -5.1 chemotaxis protein CheY compare
AO353_05130 -1.4 -2.4 anti-anti-sigma factor compare
AO353_14220 -1.4 -1.8 ribosomal large subunit pseudouridine synthase D compare
AO353_09050 -1.3 -4.0 recombinase XerC compare
AO353_13225 -1.3 -2.6 50S ribosomal protein L9 compare
AO353_27650 -1.3 -4.0 cell division protein FtsK compare
AO353_13640 -1.3 -3.5 histidine kinase compare
AO353_03420 -1.3 -4.0 phosphogluconate dehydratase compare
AO353_20865 -1.3 -2.5 cold-shock protein compare
AO353_03615 -1.3 -3.3 cold-shock protein compare
AO353_05420 -1.3 -2.1 peptide chain release factor 3 compare
AO353_05690 -1.3 -3.4 SsrA-binding protein compare
AO353_11850 -1.3 -3.6 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_04520 -1.3 -3.7 elongation factor 4 compare
AO353_13245 -1.2 -5.9 hypothetical protein compare
AO353_10445 -1.2 -2.0 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_04175 -1.2 -4.1 glycerol uptake facilitator GlpF compare
AO353_03630 -1.2 -8.3 porin compare
AO353_17085 -1.2 -1.9 hypothetical protein compare
AO353_14775 -1.1 -4.8 hypothetical protein compare
AO353_20630 -1.1 -6.7 SAM-dependent methyltransferase compare
AO353_07290 -1.1 -6.6 mannose-1-phosphate guanylyltransferase compare
AO353_27925 -1.1 -1.9 hypothetical protein compare
AO353_10435 -1.1 -6.6 chromosome partitioning protein compare
AO353_00330 -1.1 -6.1 hypothetical protein compare
AO353_14940 -1.0 -3.2 malate:quinone oxidoreductase compare
AO353_07315 -1.0 -2.0 rRNA methyltransferase compare
AO353_05140 -1.0 -5.6 outer membrane lipid asymmetry maintenance protein MlaD compare
AO353_25335 -1.0 -2.3 malonate decarboxylase acyl carrier protein compare
AO353_22680 -1.0 -5.4 aldehyde dehydrogenase conserved
AO353_02940 -1.0 -2.3 DNA-binding protein compare
AO353_11530 -1.0 -5.5 diguanylate cyclase compare
AO353_16805 -1.0 -4.6 recombinase RecA compare
AO353_08485 -1.0 -7.6 threonine dehydratase compare
AO353_16450 -1.0 -6.9 protein-PII uridylyltransferase compare
AO353_05625 -1.0 -1.2 transcription elongation factor GreA compare
AO353_00835 -1.0 -4.5 transporter compare
AO353_02975 -1.0 -2.0 aspartate kinase compare
AO353_08885 -0.9 -7.5 polyphosphate kinase compare
AO353_00460 -0.9 -2.6 TetR family transcriptional regulator compare
AO353_03025 -0.9 -2.9 acetylornithine aminotransferase compare
AO353_15900 -0.9 -1.4 GTP-binding protein compare
AO353_10440 -0.9 -3.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
AO353_15295 -0.9 -4.5 division/cell wall cluster transcriptional repressor MraZ compare
AO353_08880 -0.9 -1.9 exopolyphosphatase compare
AO353_02130 -0.9 -3.3 disulfide bond formation protein DsbA compare
AO353_02135 -0.9 -5.1 hypothetical protein compare
AO353_03515 -0.9 -1.7 cold-shock protein compare
AO353_05105 -0.9 -5.5 histidinol-phosphate aminotransferase compare
AO353_19030 -0.9 -4.8 phospho-2-dehydro-3-deoxyheptonate aldolase compare
AO353_14405 -0.9 -5.5 ATPase compare
AO353_28055 -0.9 -2.1 hypothetical protein compare
AO353_08620 -0.9 -1.7 hypothetical protein compare
AO353_17885 -0.9 -1.5 hypothetical protein compare
AO353_10430 -0.8 -2.3 chromosome partitioning protein ParB compare
AO353_07685 -0.8 -2.3 hypothetical protein compare
AO353_05520 -0.8 -2.9 nicotinate-nucleotide pyrophosphorylase compare
AO353_09920 -0.8 -5.9 aldose epimerase compare
AO353_01780 -0.8 -5.7 heat-shock protein Hsp90 compare
AO353_08995 -0.8 -5.9 chemotaxis protein CheY compare
AO353_27675 -0.8 -4.8 ATP-dependent Clp protease ATP-binding subunit ClpA compare
AO353_05550 -0.8 -3.9 pseudouridine synthase compare
AO353_22685 -0.8 -2.7 peroxidase compare
AO353_05325 -0.8 -3.7 GntR family transcriptional regulator compare
AO353_27155 -0.8 -1.8 hypothetical protein compare
AO353_20095 -0.8 -3.3 histidine kinase compare
AO353_23620 -0.8 -1.8 hypothetical protein compare
AO353_19360 -0.8 -1.7 peroxiredoxin compare
AO353_15830 -0.8 -1.9 transcriptional regulator compare
AO353_19250 -0.8 -1.2 molybdenum cofactor guanylyltransferase compare
AO353_19310 -0.8 -1.9 enoyl-CoA hydratase compare


Specific Phenotypes

For 15 genes in this experiment

For carbon source D-Mannose in Pseudomonas fluorescens FW300-N2E3

For carbon source D-Mannose across organisms