Experiment set5IT017 for Pseudomonas fluorescens FW300-N2E3

Compare to:

D-Mannose carbon source

200 most detrimental genes:

  gene name fitness t score description  
AO353_06710 +1.1 2.7 riboflavin synthase subunit alpha compare
AO353_17945 +0.9 2.9 cyclic nucleotide-binding protein compare
AO353_25110 +0.9 6.5 porin compare
AO353_22195 +0.8 2.6 metal ABC transporter permease compare
AO353_18655 +0.8 2.8 flagellar assembly protein FliT compare
AO353_12565 +0.8 2.0 type II secretion system protein GspH compare
AO353_22600 +0.8 2.3 hypothetical protein compare
AO353_28670 +0.8 3.1 hypothetical protein compare
AO353_09945 +0.7 3.8 LysR family transcriptional regulator compare
AO353_27710 +0.7 2.1 DNA repair protein compare
AO353_18700 +0.7 2.7 flagellar biogenesis protein compare
AO353_18600 +0.7 3.5 flagellar basal-body rod protein FlgG compare
AO353_20800 +0.7 1.6 hypothetical protein compare
AO353_14860 +0.7 2.4 hypoxanthine-guanine phosphoribosyltransferase compare
AO353_08910 +0.7 1.5 hypothetical protein compare
AO353_06355 +0.7 2.8 thiamine-phosphate pyrophosphorylase compare
AO353_00265 +0.7 2.7 hypothetical protein compare
AO353_10945 +0.7 2.1 cytochrome C compare
AO353_10990 +0.7 4.6 glutamate:protein symporter compare
AO353_20265 +0.7 1.6 spore coat protein compare
AO353_00185 +0.7 1.5 phage tail protein compare
AO353_16155 +0.6 1.6 antibiotic biosynthesis monooxygenase compare
AO353_20065 +0.6 2.5 hypothetical protein compare
AO353_03710 +0.6 2.3 formyltetrahydrofolate deformylase compare
AO353_26240 +0.6 1.8 hypothetical protein compare
AO353_28320 +0.6 2.0 aminopeptidase compare
AO353_07610 +0.6 1.3 hypothetical protein compare
AO353_12650 +0.6 1.1 hypothetical protein compare
AO353_05240 +0.6 1.8 rod shape-determining protein MreD compare
AO353_09135 +0.6 1.5 cytochrome C compare
AO353_22630 +0.6 2.9 TetR family transcriptional regulator compare
AO353_15410 +0.6 1.5 hypothetical protein compare
AO353_00610 +0.6 1.5 cytochrome C oxidase Cbb3 compare
AO353_07875 +0.6 1.7 hypothetical protein compare
AO353_07325 +0.6 1.4 diadenosine tetraphosphatase compare
AO353_16765 +0.5 1.6 hypothetical protein compare
AO353_13920 +0.5 2.2 dihydroxyacetone kinase compare
AO353_27215 +0.5 1.8 hypothetical protein compare
AO353_23590 +0.5 1.4 ArsR family transcriptional regulator compare
AO353_00235 +0.5 2.0 transcriptional regulator compare
AO353_15465 +0.5 3.0 cytochrome C oxidase compare
AO353_19605 +0.5 1.5 hypothetical protein compare
AO353_23400 +0.5 1.5 hypothetical protein compare
AO353_00105 +0.5 1.0 hypothetical protein compare
AO353_01705 +0.5 1.8 alpha/beta hydrolase compare
AO353_16375 +0.5 0.9 hypothetical protein compare
AO353_09765 +0.5 2.3 hypothetical protein compare
AO353_00250 +0.5 2.0 hypothetical protein compare
AO353_08775 +0.5 1.6 cell division protein ZapA compare
AO353_05880 +0.5 1.4 plasmid stabilization protein compare
AO353_08060 +0.5 2.0 hypothetical protein compare
AO353_03450 +0.5 2.6 heme oxygenase compare
AO353_23950 +0.5 2.0 hypothetical protein compare
AO353_13160 +0.5 1.2 membrane protease HflC compare
AO353_15170 +0.5 2.0 cytochrome D ubiquinol oxidase subunit III compare
AO353_27535 +0.5 1.9 3-hydroxybutyryl-CoA dehydrogenase compare
AO353_03000 +0.5 1.2 topoisomerase II compare
AO353_26100 +0.5 1.2 lysozyme compare
AO353_27500 +0.5 1.3 hypothetical protein compare
AO353_27415 +0.5 1.3 hypothetical protein compare
AO353_07465 +0.5 1.8 addiction module toxin RelE compare
AO353_27855 +0.5 1.4 MarR family transcriptional regulator compare
AO353_28295 +0.5 1.1 GNAT family acetyltransferase compare
AO353_04970 +0.5 1.7 cell division protein DedD compare
AO353_03605 +0.5 1.0 FmdB family transcriptional regulator compare
AO353_24415 +0.5 1.3 glutamine ABC transporter ATP-binding protein compare
AO353_00670 +0.5 2.3 acyl-CoA dehydrogenase compare
AO353_29005 +0.5 1.5 hypothetical protein compare
AO353_10085 +0.5 2.0 pyridoxamine kinase compare
AO353_28115 +0.5 2.2 DNA glycosylase compare
AO353_29145 +0.5 1.9 HxlR family transcriptional regulator compare
AO353_27905 +0.5 2.4 N-formylglutamate amidohydrolase compare
AO353_24595 +0.5 1.5 hypothetical protein compare
AO353_02660 +0.4 2.1 peptidase P60 compare
AO353_23015 +0.4 1.7 histidine kinase compare
AO353_22810 +0.4 0.9 hypothetical protein compare
AO353_08555 +0.4 2.1 hypothetical protein compare
AO353_26315 +0.4 2.3 hypothetical protein compare
AO353_21330 +0.4 3.2 RpiR family transcriptional regulator compare
AO353_11185 +0.4 3.7 channel protein TolC compare
AO353_13585 +0.4 2.2 predicted copper homeostasis protein (from data) compare
AO353_17175 +0.4 1.1 beta-ketoadipyl CoA thiolase compare
AO353_00170 +0.4 1.2 lysozyme compare
AO353_06300 +0.4 2.7 ATP-dependent helicase compare
AO353_21585 +0.4 1.7 hydroxyacid dehydrogenase compare
AO353_19885 +0.4 2.2 ion transporter compare
AO353_03055 +0.4 2.9 ABC transporter for L-Arginine and L-Citrulline, periplasmic substrate-binding component (from data) compare
AO353_06525 +0.4 1.2 dehydratase compare
AO353_19070 +0.4 1.4 hypothetical protein compare
AO353_11180 +0.4 4.0 large adhesive protein compare
AO353_21545 +0.4 1.9 type VI secretion effector protein (Hcp) compare
AO353_14485 +0.4 1.0 pseudouridine synthase compare
AO353_28815 +0.4 1.2 hypothetical protein compare
AO353_07755 +0.4 1.8 betainyl-CoA thiolase (EC 3.1.2.-) (from data) compare
AO353_06745 +0.4 1.2 zinc-binding protein compare
AO353_26160 +0.4 2.1 hypothetical protein compare
AO353_12315 +0.4 3.5 glucosyltransferase MdoH compare
AO353_03035 +0.4 1.7 AraC family transcriptional regulator compare
AO353_06275 +0.4 1.5 DNA polymerase III subunit epsilon compare
AO353_16755 +0.4 2.1 hydroxyacid dehydrogenase compare
AO353_17540 +0.4 1.2 helicase compare
AO353_04005 +0.4 1.9 hypothetical protein compare
AO353_18760 +0.4 2.8 flagellar biosynthetic protein FlhB compare
AO353_15975 +0.4 2.3 GntR family transcriptional regulator compare
AO353_27060 +0.4 1.8 XshC-Cox1 family protein compare
AO353_17270 +0.4 1.5 hypothetical protein compare
AO353_16345 +0.4 1.2 energy transducer TonB compare
AO353_18510 +0.4 1.5 hypothetical protein compare
AO353_26865 +0.4 1.0 transcriptional regulator compare
AO353_17965 +0.4 1.9 hypothetical protein compare
AO353_22170 +0.4 2.5 7-cyano-7-deazaguanine synthase compare
AO353_28640 +0.4 1.2 hypothetical protein compare
AO353_23575 +0.4 2.0 hypothetical protein compare
AO353_14395 +0.4 1.7 poly(A) polymerase compare
AO353_06510 +0.4 2.6 ATP-dependent protease compare
AO353_09345 +0.4 1.1 hypothetical protein compare
AO353_15530 +0.4 1.7 hypothetical protein compare
AO353_00345 +0.4 2.2 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
AO353_21645 +0.4 1.0 cobalt transporter compare
AO353_11190 +0.4 3.1 ABC transporter compare
AO353_01595 +0.4 0.7 Flp pilus assembly protein CpaB compare
AO353_27935 +0.4 1.6 succinyl-CoA--3-ketoacid-CoA transferase compare
AO353_17665 +0.4 2.6 glycine cleavage system protein R compare
AO353_13740 +0.4 1.9 MFS transporter compare
AO353_20910 +0.4 2.1 MerR family transcriptional regulator compare
AO353_25315 +0.4 1.4 malonate decarboxylase subunit epsilon compare
AO353_04660 +0.4 1.5 molybdenum cofactor biosynthesis protein MoaC compare
AO353_19840 +0.4 1.1 hypothetical protein compare
AO353_26105 +0.4 1.6 structural protein P5 compare
AO353_11195 +0.4 3.1 hemolysin secretion protein D compare
AO353_03815 +0.4 1.1 heme utilization protein compare
AO353_00635 +0.4 1.0 hypothetical protein compare
AO353_04070 +0.4 2.1 electron transporter RnfD compare
AO353_00540 +0.4 1.5 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_12910 +0.4 1.3 hypothetical protein compare
AO353_00385 +0.4 1.7 glycerophosphodiester phosphodiesterase compare
AO353_26525 +0.4 0.8 hypothetical protein compare
AO353_16675 +0.4 1.5 phage tail protein compare
AO353_07625 +0.4 1.5 RNA polymerase subunit sigma-70 compare
AO353_11610 +0.4 1.1 glutamine ABC transporter ATP-binding protein compare
AO353_23670 +0.4 1.6 glutathione S-transferase compare
AO353_01810 +0.4 2.7 branched-chain amino acid ABC transporter substrate-binding protein compare
AO353_01915 +0.4 0.7 GlcG protein compare
AO353_28000 +0.4 1.3 branched-chain amino acid ABC transporter compare
AO353_13155 +0.4 1.3 hypothetical protein compare
AO353_24425 +0.4 0.6 amino acid ABC transporter permease compare
AO353_23810 +0.4 1.6 transcriptional regulator compare
AO353_23625 +0.4 1.8 hypothetical protein compare
AO353_17515 +0.4 2.1 short-chain dehydrogenase compare
AO353_21455 +0.4 0.8 cation:proton antiporter compare
AO353_08965 +0.4 1.9 transcriptional regulator compare
AO353_24000 +0.4 1.7 isochorismate synthase compare
AO353_20270 +0.4 1.3 spore coat protein compare
AO353_25955 +0.4 1.2 NIPSNAP family containing protein compare
AO353_03290 +0.4 0.6 peptide deformylase compare
AO353_02990 +0.4 1.4 6,7-dimethyl-8-ribityllumazine synthase compare
AO353_07140 +0.4 3.1 peptidase M23 compare
AO353_08435 +0.4 1.1 phosphatidylglycerophosphatase compare
AO353_00535 +0.3 2.6 ABC transporter ATP-binding protein compare
AO353_00195 +0.3 0.8 virion morphogenesis protein compare
AO353_03010 +0.3 1.8 succinylglutamate-semialdehyde dehydrogenase compare
AO353_11255 +0.3 1.3 RND transporter compare
AO353_21180 +0.3 1.6 transposase compare
AO353_15460 +0.3 2.3 cytochrome o ubiquinol oxidase subunit III compare
AO353_26070 +0.3 0.9 hypothetical protein compare
AO353_27890 +0.3 1.8 RpiR family transcriptional regulator compare
AO353_11455 +0.3 1.2 hypothetical protein compare
AO353_21880 +0.3 2.2 LuxR family transcriptional regulator compare
AO353_26310 +0.3 1.7 hypothetical protein compare
AO353_17650 +0.3 1.7 response regulator SirA compare
AO353_02630 +0.3 0.9 5,6-dimethylbenzimidazole synthase compare
AO353_03655 +0.3 1.2 cobalamin adenosyltransferase compare
AO353_22035 +0.3 1.4 pyridoxine 5'-phosphate oxidase compare
AO353_22520 +0.3 0.9 hypothetical protein compare
AO353_20135 +0.3 2.4 D-alanyl-D-alanine endopeptidase compare
AO353_12720 +0.3 1.4 hypothetical protein compare
AO353_12200 +0.3 1.9 hypothetical protein compare
AO353_18755 +0.3 2.1 flagellar biosynthetic protein FliR compare
AO353_08835 +0.3 2.5 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
AO353_24545 +0.3 2.1 hypothetical protein compare
AO353_12240 +0.3 1.4 histidine utilization repressor compare
AO353_26415 +0.3 1.6 hypothetical protein compare
AO353_23430 +0.3 1.2 (2Fe-2S)-binding protein compare
AO353_00150 +0.3 1.3 hypothetical protein compare
AO353_24740 +0.3 1.1 hypothetical protein compare
AO353_13575 +0.3 1.0 hypothetical protein compare
AO353_03935 +0.3 1.1 fructose-bisphosphate aldolase compare
AO353_02150 +0.3 1.3 fumarate hydratase compare
AO353_11720 +0.3 0.9 taurine transporter ATP-binding subunit compare
AO353_11170 +0.3 2.6 hypothetical protein compare
AO353_04410 +0.3 1.0 phosphoribosylglycinamide formyltransferase compare
AO353_13050 +0.3 1.3 DNA topoisomerase IV compare
AO353_27585 +0.3 0.7 DNA repair protein compare
AO353_11920 +0.3 0.8 hypothetical protein compare
AO353_03250 +0.3 0.6 gluconokinase compare
AO353_24665 +0.3 2.4 phosphoglucomutase compare
AO353_09625 +0.3 1.8 type VI secretion protein ImpA compare
AO353_14450 +0.3 1.6 hemin ABC transporter ATP-binding protein compare
AO353_09150 +0.3 1.2 cytochrome C2 compare
AO353_27010 +0.3 1.2 alpha-ketoglutarate-dependent dioxygenase compare


Specific Phenotypes

For 15 genes in this experiment

For carbon source D-Mannose in Pseudomonas fluorescens FW300-N2E3

For carbon source D-Mannose across organisms