Experiment set5IT016 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Cytidine carbon source

200 most important genes:

  gene name fitness t score description  
AO353_05115 -4.9 -11.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_12070 -4.7 -9.1 imidazoleglycerol-phosphate dehydratase compare
AO353_12085 -4.6 -10.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_07230 -4.5 -19.1 anthranilate synthase compare
AO353_00310 -4.3 -11.8 transaldolase compare
AO353_20620 -4.3 -9.6 isopropylmalate isomerase compare
AO353_13165 -4.2 -7.6 ATP phosphoribosyltransferase regulatory subunit compare
AO353_07210 -4.2 -6.4 indole-3-glycerol-phosphate synthase compare
AO353_12520 -4.0 -15.2 glutamate synthase compare
AO353_08180 -4.0 -15.9 homoserine O-acetyltransferase compare
AO353_14505 -4.0 -15.3 ketol-acid reductoisomerase compare
AO353_12500 -3.9 -2.7 shikimate kinase compare
AO353_20635 -3.9 -15.1 3-isopropylmalate dehydrogenase compare
AO353_08185 -3.9 -12.3 methionine biosynthesis protein MetW compare
AO353_20625 -3.9 -5.9 3-isopropylmalate dehydratase compare
AO353_05110 -3.9 -13.7 histidinol dehydrogenase compare
AO353_12515 -3.9 -25.1 glutamate synthase compare
AO353_05800 -3.8 -7.3 hypothetical protein compare
AO353_20695 -3.8 -7.2 O-succinylhomoserine sulfhydrylase compare
AO353_22800 -3.8 -4.4 sulfite reductase compare
AO353_10710 -3.7 -6.1 tryptophan synthase subunit beta compare
AO353_12115 -3.6 -3.5 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_08345 -3.5 -11.8 dihydroxy-acid dehydratase compare
AO353_12090 -3.5 -3.4 imidazole glycerol phosphate synthase subunit HisF compare
AO353_09240 -3.5 -2.4 acetylglutamate kinase compare
AO353_02710 -3.5 -15.0 (p)ppGpp synthetase compare
AO353_02075 -3.4 -14.3 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_10030 -3.4 -15.0 pyruvate carboxylase subunit A compare
AO353_20665 -3.4 -12.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_10025 -3.4 -18.0 pyruvate carboxylase subunit B compare
AO353_08685 -3.3 -10.4 N-acetylglutamate synthase compare
AO353_10035 -3.3 -10.7 LysR family transcriptional regulator compare
AO353_09000 -3.1 -7.2 argininosuccinate lyase compare
AO353_20175 -3.1 -4.2 ATP-dependent Clp protease proteolytic subunit compare
AO353_12075 -3.1 -10.0 imidazole glycerol phosphate synthase subunit HisH compare
AO353_08510 -3.0 -7.6 3-phosphoglycerate dehydrogenase compare
AO353_14370 -3.0 -9.6 glucose-6-phosphate isomerase compare
AO353_14400 -3.0 -6.4 Fis family transcriptional regulator compare
AO353_07215 -3.0 -9.9 anthranilate phosphoribosyltransferase compare
AO353_04155 -3.0 -14.2 ornithine carbamoyltransferase compare
AO353_14495 -3.0 -14.0 acetolactate synthase 3 catalytic subunit compare
AO353_12365 -3.0 -4.3 phosphoribosyl-AMP cyclohydrolase compare
AO353_06495 -2.9 -7.4 gamma-glutamyl phosphate reductase compare
AO353_13070 -2.9 -9.9 phosphoserine phosphatase compare
AO353_07155 -2.8 -9.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_18780 -2.8 -9.0 cobyrinic acid a,c-diamide synthase compare
AO353_14500 -2.8 -8.7 acetolactate synthase 3 regulatory subunit compare
AO353_08165 -2.8 -4.9 pyrroline-5-carboxylate reductase compare
AO353_22370 -2.6 -5.8 branched-chain amino acid ABC transporter substrate-binding protein compare
AO353_08015 -2.6 -9.9 5,10-methylenetetrahydrofolate reductase compare
AO353_18540 -2.5 -3.7 pseudouridine synthase compare
AO353_04105 -2.5 -10.2 argininosuccinate synthase compare
AO353_15295 -2.4 -8.8 division/cell wall cluster transcriptional repressor MraZ compare
AO353_08465 -2.4 -15.0 phosphoenolpyruvate-protein phosphotransferase compare
AO353_07220 -2.4 -8.5 anthranilate synthase compare
AO353_19090 -2.3 -3.5 MarR family transcriptional regulator compare
AO353_22375 -2.3 -4.9 cytochrome c-550 PedF compare
AO353_06045 -2.3 -8.8 exodeoxyribonuclease V subunit beta compare
AO353_05225 -2.2 -14.5 hypothetical protein compare
AO353_26830 -2.2 -5.5 histidine kinase compare
AO353_03590 -2.2 -4.5 crossover junction endodeoxyribonuclease RuvC compare
AO353_07315 -2.2 -3.3 rRNA methyltransferase compare
AO353_00825 -2.1 -5.1 porin compare
AO353_06040 -2.1 -4.6 exodeoxyribonuclease V subunit alpha compare
AO353_14595 -2.0 -10.5 carbonate dehydratase compare
AO353_04185 -2.0 -7.9 DeoR family transcriptional regulator compare
AO353_10705 -2.0 -5.4 tryptophan synthase subunit alpha compare
AO353_14420 -2.0 -4.7 molecular chaperone DnaK compare
AO353_08265 -1.9 -6.9 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_07525 -1.9 -12.1 biotin synthase compare
AO353_00495 -1.8 -3.1 DNA topoisomerase I compare
AO353_00750 -1.8 -4.3 GntR family transcriptional regulator compare
AO353_15925 -1.8 -6.5 2-isopropylmalate synthase compare
AO353_06050 -1.8 -7.8 exodeoxyribonuclease V subunit gamma compare
AO353_02070 -1.8 -5.4 prephenate dehydratase compare
AO353_27650 -1.8 -4.7 cell division protein FtsK compare
AO353_02250 -1.8 -2.7 chorismate synthase compare
AO353_02685 -1.7 -4.6 phosphoribosylglycinamide formyltransferase compare
AO353_08350 -1.7 -7.1 hypothetical protein compare
AO353_05130 -1.6 -2.0 anti-anti-sigma factor compare
AO353_08115 -1.6 -6.4 energy transducer TonB compare
AO353_03360 -1.6 -7.0 glucose-6-phosphate dehydrogenase compare
AO353_13420 -1.6 -3.0 hypothetical protein compare
AO353_04220 -1.6 -4.4 chemotaxis protein CheY compare
AO353_20835 -1.5 -4.6 Ribokinase (EC 2.7.1.15) (from data) compare
AO353_01975 -1.5 -6.5 glycosyl transferase compare
AO353_08885 -1.5 -11.6 polyphosphate kinase compare
AO353_03615 -1.5 -3.8 cold-shock protein compare
AO353_12360 -1.5 -6.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_22380 -1.5 -6.7 amino acid ABC transporter substrate-binding protein compare
AO353_10670 -1.5 -5.8 shikimate dehydrogenase compare
AO353_03580 -1.5 -3.8 ATP-dependent DNA helicase RuvB compare
AO353_22415 -1.5 -4.3 alcohol dehydrogenase compare
AO353_26900 -1.4 -5.6 glycerate kinase compare
AO353_24130 -1.4 -2.0 hypothetical protein compare
AO353_09275 -1.4 -3.7 DNA-directed RNA polymerase subunit omega compare
AO353_21630 -1.4 -3.1 precorrin-4 C11-methyltransferase compare
AO353_16040 -1.4 -2.8 hypothetical protein compare
AO353_01375 -1.4 -6.3 phosphate acyltransferase compare
AO353_22355 -1.4 -6.7 multidrug ABC transporter permease conserved
AO353_03365 -1.4 -7.0 transcriptional regulator compare
AO353_14115 -1.4 -3.8 gamma-glutamyl kinase compare
AO353_01550 -1.3 -4.8 hypothetical protein compare
AO353_07560 -1.3 -9.1 malate synthase G compare
AO353_00515 -1.3 -3.2 hypothetical protein compare
AO353_22385 -1.3 -8.1 dehydrogenase conserved
AO353_11775 -1.3 -5.4 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_00510 -1.3 -5.3 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_16940 -1.2 -5.0 deoxycytidine triphosphate deaminase compare
AO353_22500 -1.2 -2.6 hypothetical protein compare
AO353_18715 -1.2 -1.8 histidine kinase compare
AO353_07250 -1.2 -1.6 polyamine ABC transporter permease compare
AO353_08470 -1.2 -2.0 RNA pyrophosphohydrolase compare
AO353_06720 -1.2 -2.0 NrdR family transcriptional regulator compare
AO353_13245 -1.2 -6.0 hypothetical protein compare
AO353_14150 -1.2 -1.6 peptidylprolyl isomerase compare
AO353_03420 -1.2 -3.4 phosphogluconate dehydratase compare
AO353_15250 -1.1 -3.3 cytochrome B compare
AO353_22350 -1.1 -3.1 LuxR family transcriptional regulator compare
AO353_17885 -1.1 -1.2 hypothetical protein compare
AO353_15170 -1.1 -3.1 cytochrome D ubiquinol oxidase subunit III compare
AO353_07495 -1.1 -8.5 acyl-CoA dehydrogenase compare
AO353_10455 -1.1 -1.9 tRNA modification GTPase MnmE compare
AO353_22365 -1.1 -3.9 hypothetical protein compare
AO353_00620 -1.1 -1.5 cytochrome C oxidase Cbb3 compare
AO353_00260 -1.1 -1.9 hypothetical protein compare
AO353_03630 -1.1 -7.5 porin compare
AO353_18775 -1.1 -5.4 flagellar biosynthesis protein FlhF compare
AO353_22360 -1.0 -2.8 ABC transporter ATP-binding protein compare
AO353_05490 -1.0 -3.7 transcriptional regulator compare
AO353_22945 -1.0 -7.4 glycogen branching protein compare
AO353_08045 -1.0 -7.9 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_10445 -1.0 -1.6 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_07290 -1.0 -4.7 mannose-1-phosphate guanylyltransferase compare
AO353_07430 -1.0 -7.4 pyrroloquinoline quinone biosynthesis protein PqqF compare
AO353_17625 -1.0 -5.0 RNA polymerase subunit sigma compare
AO353_23620 -1.0 -2.4 hypothetical protein compare
AO353_20170 -1.0 -3.5 trigger factor compare
AO353_17640 -1.0 -2.3 serine peptidase compare
AO353_01915 -1.0 -1.8 GlcG protein compare
AO353_07515 -1.0 -1.9 transporter compare
AO353_01355 -0.9 -5.0 3-oxoacyl-ACP synthase compare
AO353_09885 -0.9 -1.2 transcriptional regulator PhoU compare
AO353_23495 -0.9 -1.6 SAM-dependent methyltransferase compare
AO353_16655 -0.9 -2.3 phage baseplate protein compare
AO353_18285 -0.9 -2.9 3-phosphoglycerate kinase compare
AO353_05690 -0.9 -2.8 SsrA-binding protein compare
AO353_20505 -0.9 -4.1 cytidyltransferase compare
AO353_00605 -0.9 -4.4 cytochrome C oxidase Cbb3 compare
AO353_07645 -0.9 -0.9 sarcosine oxidase subunit gamma compare
AO353_16835 -0.9 -1.6 LuxR family transcriptional regulator compare
AO353_25320 -0.9 -2.4 phosphoribosyl-dephospho-CoA transferase compare
AO353_02320 -0.9 -4.8 allantoinase compare
AO353_12080 -0.9 -2.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
AO353_27550 -0.9 -2.1 hypothetical protein compare
AO353_00505 -0.9 -3.4 3-ketoacyl-CoA thiolase compare
AO353_19145 -0.9 -2.3 protease HtpX compare
AO353_10630 -0.9 -3.8 16S rRNA methyltransferase compare
AO353_07255 -0.9 -6.7 polyamine ABC transporter substrate-binding protein compare
AO353_14930 -0.8 -1.9 GntR family transcriptional regulator compare
AO353_19360 -0.8 -1.5 peroxiredoxin compare
AO353_18400 -0.8 -4.4 agmatinase compare
AO353_14220 -0.8 -1.0 ribosomal large subunit pseudouridine synthase D compare
AO353_27735 -0.8 -4.6 isocitrate lyase compare
AO353_02555 -0.8 -5.9 histidine kinase compare
AO353_04410 -0.8 -1.9 phosphoribosylglycinamide formyltransferase compare
AO353_20510 -0.8 -1.6 amidase compare
AO353_03520 -0.8 -2.3 hypothetical protein compare
AO353_16805 -0.8 -3.9 recombinase RecA compare
AO353_18890 -0.8 -3.5 cytochrome C compare
AO353_11165 -0.8 -4.9 hypothetical protein compare
AO353_07520 -0.8 -5.7 8-amino-7-oxononanoate synthase compare
AO353_22985 -0.8 -1.7 hypothetical protein compare
AO353_26080 -0.8 -2.0 hypothetical protein compare
AO353_02600 -0.8 -1.5 alpha-ribazole phosphatase compare
AO353_11530 -0.8 -4.4 diguanylate cyclase compare
AO353_02640 -0.8 -0.9 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO353_06405 -0.8 -2.9 hypothetical protein compare
AO353_03060 -0.8 -7.1 Acetyl-coenzyme A synthetase (EC 6.2.1.1) (from data) compare
AO353_05010 -0.8 -1.7 HopJ type III effector protein compare
AO353_19295 -0.8 -1.5 hypothetical protein compare
AO353_17410 -0.8 -1.9 arylsulfate sulfotransferase compare
AO353_06455 -0.8 -1.6 D-alanyl-D-alanine carboxypeptidase compare
AO353_09010 -0.8 -3.0 hypothetical protein compare
AO353_09895 -0.7 -3.5 phosphate ABC transporter permease compare
AO353_20540 -0.7 -3.8 aromatic amino acid aminotransferase compare
AO353_26195 -0.7 -1.9 hypothetical protein compare
AO353_03510 -0.7 -2.7 glycine cleavage system protein T compare
AO353_21935 -0.7 -1.6 nitrite reductase compare
AO353_26285 -0.7 -1.4 hypothetical protein compare
AO353_24560 -0.7 -2.3 transcriptional regulator compare
AO353_15725 -0.7 -2.7 hypothetical protein compare
AO353_06080 -0.7 -5.7 methylmalonate-semialdehyde dehydrogenase compare
AO353_13140 -0.7 -3.6 tRNA dimethylallyltransferase compare
AO353_23925 -0.7 -2.8 histidine kinase compare
AO353_12395 -0.7 -2.6 poly(3-hydroxyalkanoate) granule-associated protein PhaF compare
AO353_18705 -0.7 -2.4 anti-anti-sigma factor compare
AO353_22420 -0.7 -2.7 histidine kinase compare
AO353_25260 -0.7 -2.2 hypothetical protein compare
AO353_23425 -0.7 -2.3 3-demethylubiquinone-9 3-methyltransferase compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source Cytidine in Pseudomonas fluorescens FW300-N2E3

For carbon source Cytidine across organisms