Experiment set5IT016 for Pseudomonas fluorescens FW300-N1B4

Compare to:

LB 20C

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_1307 -4.3 -5.1 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_3168 -2.6 -5.1 AmpG permease compare
Pf1N1B4_2005 -2.4 -3.6 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_1906 -2.4 -6.3 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_3093 -2.0 -3.5 Outer membrane protein H precursor compare
Pf1N1B4_4035 -1.8 -2.0 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
Pf1N1B4_350 -1.8 -7.6 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_3468 -1.8 -3.1 Negative regulator of flagellin synthesis FlgM compare
Pf1N1B4_4040 -1.8 -3.0 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_683 -1.7 -3.7 Fumarate hydratase class I, aerobic (EC 4.2.1.2) compare
Pf1N1B4_2912 -1.7 -2.3 GTP-binding and nucleic acid-binding protein YchF compare
Pf1N1B4_1565 -1.7 -4.0 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_1335 -1.6 -6.1 Copper metallochaperone, bacterial analog of Cox17 protein compare
Pf1N1B4_1334 -1.5 -1.5 FIG00955840: hypothetical protein compare
Pf1N1B4_2209 -1.5 -7.6 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_3812 -1.5 -8.9 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_3779 -1.5 -3.7 Hydrolase, alpha/beta fold family functionally coupled to Phosphoribulokinase compare
Pf1N1B4_3917 -1.5 -3.5 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf1N1B4_3143 -1.4 -3.8 RecA protein compare
Pf1N1B4_5659 -1.4 -9.8 NfuA Fe-S protein maturation compare
Pf1N1B4_2377 -1.4 -5.9 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf1N1B4_327 -1.4 -2.9 hypothetical protein compare
Pf1N1B4_2284 -1.4 -4.9 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf1N1B4_2736 -1.3 -3.1 ATP-dependent RNA helicase PA3950 compare
Pf1N1B4_1403 -1.3 -6.2 3'-to-5' exoribonuclease RNase R compare
Pf1N1B4_4219 -1.3 -3.1 FIG01074225: hypothetical protein compare
Pf1N1B4_2488 -1.2 -6.0 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf1N1B4_141 -1.2 -5.7 PvdE, pyoverdine ABC export system, fused ATPase and permease components compare
Pf1N1B4_1617 -1.2 -4.7 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_733 -1.2 -1.7 Methionyl-tRNA synthetase (EC 6.1.1.10) compare
Pf1N1B4_4755 -1.2 -3.2 ribosomal protein S6 glutaminyl transferase related protein compare
Pf1N1B4_3833 -1.2 -6.7 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_2939 -1.2 -4.6 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf1N1B4_2163 -1.2 -1.6 hypothetical protein compare
Pf1N1B4_2493 -1.2 -2.4 Acyl-CoA dehydrogenase (EC 1.3.8.7) compare
Pf1N1B4_2484 -1.2 -3.5 hypothetical protein compare
Pf1N1B4_5357 -1.1 -2.4 hypothetical protein compare
Pf1N1B4_617 -1.1 -2.3 Carbamate kinase (EC 2.7.2.2) compare
Pf1N1B4_3518 -1.1 -2.9 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_2858 -1.1 -7.3 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_1399 -1.1 -4.0 FIG003573: hypothetical protein compare
Pf1N1B4_2037 -1.1 -2.1 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf1N1B4_4029 -1.1 -2.5 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_3939 -1.1 -2.8 FIG00953489: hypothetical protein compare
Pf1N1B4_188 -1.1 -2.3 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_2621 -1.1 -2.2 PspA/IM30 family protein compare
Pf1N1B4_4969 -1.0 -1.6 FIG00956189: hypothetical protein compare
Pf1N1B4_4473 -1.0 -2.4 Homoserine/homoserine lactone efflux protein compare
Pf1N1B4_2047 -1.0 -2.4 Chorismate--pyruvate lyase (EC 4.1.3.40) compare
Pf1N1B4_2823 -1.0 -2.1 COG1496: Uncharacterized conserved protein compare
Pf1N1B4_1569 -1.0 -7.4 Twin-arginine translocation protein TatC compare
Pf1N1B4_616 -1.0 -2.8 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_339 -1.0 -2.2 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf1N1B4_2401 -1.0 -1.2 Lipoprotein, putative compare
Pf1N1B4_4038 -1.0 -1.8 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_1315 -1.0 -5.7 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_6045 -1.0 -2.6 CigR (Putative inner membrane protein) compare
Pf1N1B4_2283 -1.0 -2.4 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf1N1B4_2490 -1.0 -4.0 Biotin synthesis protein BioC compare
Pf1N1B4_1695 -1.0 -1.7 Cystine ABC transporter, ATP-binding protein compare
Pf1N1B4_2384 -1.0 -6.1 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_2176 -0.9 -1.6 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly compare
Pf1N1B4_1091 -0.9 -3.8 FIG138315: Putative alpha helix protein compare
Pf1N1B4_4487 -0.9 -2.5 FIG00955631: hypothetical protein compare
Pf1N1B4_2035 -0.9 -3.8 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf1N1B4_2878 -0.9 -5.5 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_578 -0.9 -3.5 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_3119 -0.9 -2.3 Holin compare
Pf1N1B4_4039 -0.9 -4.3 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_4731 -0.9 -3.5 Sigma-54 dependent transcriptional regulator compare
Pf1N1B4_1827 -0.9 -3.4 FIG00953482: hypothetical protein compare
Pf1N1B4_1472 -0.9 -1.7 Lipopolysaccharide heptosyltransferase I (EC 2.4.1.-) compare
Pf1N1B4_5519 -0.9 -3.2 hypothetical protein compare
Pf1N1B4_2272 -0.9 -3.1 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_2924 -0.9 -1.7 FIG00955589: hypothetical protein compare
Pf1N1B4_2487 -0.9 -4.3 Biotin synthase (EC 2.8.1.6) compare
Pf1N1B4_3764 -0.9 -2.8 Allantoicase (EC 3.5.3.4) compare
Pf1N1B4_4299 -0.8 -2.1 sensor histidine kinase compare
Pf1N1B4_2224 -0.8 -2.2 FIG00953390: hypothetical protein compare
Pf1N1B4_2350 -0.8 -2.0 UPF0301 protein YqgE compare
Pf1N1B4_3990 -0.8 -2.7 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf1N1B4_1544 -0.8 -4.9 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_2856 -0.8 -2.4 Poly(A) polymerase (EC 2.7.7.19) compare
Pf1N1B4_5146 -0.8 -1.8 Chromosome initiation inhibitor compare
Pf1N1B4_1568 -0.8 -2.1 Twin-arginine translocation protein TatB compare
Pf1N1B4_5383 -0.8 -5.7 hypothetical protein compare
Pf1N1B4_4603 -0.8 -1.7 hypothetical protein compare
Pf1N1B4_962 -0.8 -6.0 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf1N1B4_4335 -0.8 -1.6 Putative translation initiation inhibitor, yjgF family compare
Pf1N1B4_4531 -0.8 -1.2 FIG01221261: hypothetical protein compare
Pf1N1B4_3871 -0.8 -7.0 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf1N1B4_3906 -0.8 -2.4 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_4103 -0.8 -1.5 Flagellar synthesis regulator FleN compare
Pf1N1B4_208 -0.8 -2.8 Two-component system response regulator QseB compare
Pf1N1B4_4134 -0.8 -2.3 Na+ driven multidrug efflux pump compare
Pf1N1B4_974 -0.8 -2.6 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf1N1B4_76 -0.8 -2.0 ATP binding protein compare
Pf1N1B4_5813 -0.8 -2.0 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) compare
Pf1N1B4_3872 -0.8 -5.5 Putative analog of CcoH, COG3198 compare
Pf1N1B4_5266 -0.8 -2.2 hypothetical protein compare
Pf1N1B4_4960 -0.8 -1.7 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf1N1B4_1336 -0.8 -1.2 Putative multicopper oxidases compare
Pf1N1B4_675 -0.8 -2.5 hypothetical protein compare
Pf1N1B4_1863 -0.8 -5.6 Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone compare
Pf1N1B4_2526 -0.8 -6.3 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf1N1B4_2879 -0.8 -4.5 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_5151 -0.8 -2.3 FIG002283: Isochorismatase family protein compare
Pf1N1B4_2783 -0.7 -1.5 Transcription elongation factor GreB-related protein compare
Pf1N1B4_4477 -0.7 -1.8 Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase (EC 1.8.1.4) compare
Pf1N1B4_2491 -0.7 -2.5 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf1N1B4_899 -0.7 -1.7 DNA polymerase III chi subunit (EC 2.7.7.7) compare
Pf1N1B4_2859 -0.7 -5.9 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf1N1B4_1750 -0.7 -2.2 Death on curing protein, Doc toxin compare
Pf1N1B4_4740 -0.7 -1.9 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf1N1B4_4476 -0.7 -2.6 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
Pf1N1B4_749 -0.7 -1.8 hypothetical protein compare
Pf1N1B4_5330 -0.7 -1.5 hypothetical protein compare
Pf1N1B4_814 -0.7 -2.2 Transcriptional regulator, PadR family compare
Pf1N1B4_2106 -0.7 -2.1 Hydrogen peroxide-inducible genes activator compare
Pf1N1B4_960 -0.7 -4.9 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf1N1B4_5014 -0.7 -1.6 Glutathione reductase (EC 1.8.1.7) compare
Pf1N1B4_476 -0.7 -2.2 ABC-type multidrug transport system, ATPase component compare
Pf1N1B4_3870 -0.7 -6.3 Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion compare
Pf1N1B4_3715 -0.7 -2.5 Cobalamin synthase compare
Pf1N1B4_961 -0.7 -6.1 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf1N1B4_1116 -0.7 -5.4 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf1N1B4_5722 -0.7 -1.8 Periplasmic protein p19 involved in high-affinity Fe2+ transport compare
Pf1N1B4_5976 -0.7 -1.9 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) compare
Pf1N1B4_1837 -0.7 -1.0 Osmotically inducible protein C compare
Pf1N1B4_1115 -0.7 -5.0 Dna binding response regulator PrrA (RegA) compare
Pf1N1B4_841 -0.7 -2.9 ABC-type sugar transport systems, ATPase components compare
Pf1N1B4_232 -0.7 -2.2 DNA-binding response regulator, LuxR family compare
Pf1N1B4_2612 -0.7 -2.1 Putative transport protein compare
Pf1N1B4_3446 -0.7 -2.0 Putative GTPases (G3E family) compare
Pf1N1B4_4317 -0.7 -1.6 DNA/RNA non-specific endonuclease compare
Pf1N1B4_175 -0.7 -0.9 sigma-54 dependent transcriptional regulator compare
Pf1N1B4_4853 -0.7 -2.0 Glycosyltransferase compare
Pf1N1B4_4028 -0.7 -1.5 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_4860 -0.7 -2.4 Sensory box sensor histidine kinase/response regulator (EC 2.7.3.-) compare
Pf1N1B4_2935 -0.7 -1.5 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) compare
Pf1N1B4_1311 -0.7 -2.1 Probable transmembrane protein compare
Pf1N1B4_3926 -0.7 -3.3 membrane protein, putative compare
Pf1N1B4_1878 -0.7 -4.5 Cytochrome c4 compare
Pf1N1B4_1236 -0.7 -3.9 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf1N1B4_1566 -0.7 -3.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_49 -0.7 -1.5 hypothetical protein compare
Pf1N1B4_5386 -0.7 -1.6 hypothetical protein compare
Pf1N1B4_3819 -0.7 -3.1 Methylisocitrate lyase (EC 4.1.3.30) compare
Pf1N1B4_2885 -0.7 -3.2 Paraquat-inducible protein A compare
Pf1N1B4_1052 -0.7 -1.5 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Pf1N1B4_3069 -0.7 -1.7 FIG00954614: hypothetical protein compare
Pf1N1B4_5588 -0.7 -1.7 Transcriptional regulator for ferulate or vanillate catabolism compare
Pf1N1B4_5639 -0.7 -2.7 D-serine deaminase (EC 4.3.1.18) compare
Pf1N1B4_2171 -0.7 -2.4 Tyrosine recombinase XerC compare
Pf1N1B4_3073 -0.7 -2.9 probable glucosyl transferase compare
Pf1N1B4_4953 -0.6 -2.1 Selenocysteine-specific translation elongation factor compare
Pf1N1B4_4957 -0.6 -1.6 Transcriptional regulator, TetR family compare
Pf1N1B4_2568 -0.6 -2.1 Translation elongation factor Tu compare
Pf1N1B4_6041 -0.6 -1.7 Carbon storage regulator compare
Pf1N1B4_234 -0.6 -2.0 hypothetical protein compare
Pf1N1B4_4839 -0.6 -1.5 lipoprotein compare
Pf1N1B4_1235 -0.6 -2.9 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf1N1B4_4592 -0.6 -2.0 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) compare
Pf1N1B4_2265 -0.6 -4.1 Thiol-disulfide isomerase and thioredoxins compare
Pf1N1B4_348 -0.6 -2.0 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf1N1B4_4412 -0.6 -1.8 Tartrate dehydrogenase (EC 1.1.1.93) @ Tartrate decarboxylase (EC 4.1.1.73) @ D-malic enzyme (EC 1.1.1.83) compare
Pf1N1B4_1069 -0.6 -3.5 YrbA protein compare
Pf1N1B4_4482 -0.6 -1.7 FIG146518: Zn-dependent hydrolases, including glyoxylases compare
Pf1N1B4_3811 -0.6 -2.1 Hydantoin racemase (EC 5.1.99.-) compare
Pf1N1B4_3232 -0.6 -2.9 3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6); Glutaconate CoA-transferase subunit A (EC 2.8.3.12) compare
Pf1N1B4_3582 -0.6 -1.4 C-methyltransferase compare
Pf1N1B4_4892 -0.6 -2.0 Transcriptional regulator, AraC family compare
Pf1N1B4_4172 -0.6 -1.3 hypothetical protein compare
Pf1N1B4_408 -0.6 -2.8 Transcriptional regulator, GntR family compare
Pf1N1B4_2718 -0.6 -2.2 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) compare
Pf1N1B4_3800 -0.6 -1.7 Enoyl-CoA hydratase/isomerase family protein compare
Pf1N1B4_3408 -0.6 -1.7 Transcriptional regulator, AraC family compare
Pf1N1B4_3869 -0.6 -5.0 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf1N1B4_1042 -0.6 -1.3 Dihydroneopterin triphosphate epimerase compare
Pf1N1B4_828 -0.6 -3.2 Multicopper oxidase compare
Pf1N1B4_2464 -0.6 -1.4 Ribosomal protein S6 glutaminyl transferase compare
Pf1N1B4_1094 -0.6 -1.5 FIG005080: Possible exported protein compare
Pf1N1B4_4825 -0.6 -2.4 Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) compare
Pf1N1B4_5096 -0.6 -3.7 Nitrate ABC transporter, nitrate-binding protein compare
Pf1N1B4_5814 -0.6 -1.4 putative membrane protein compare
Pf1N1B4_625 -0.6 -2.0 FIG023103: Predicted transmembrane protein compare
Pf1N1B4_4558 -0.6 -2.1 Outer membrane lipoprotein-sorting protein compare
Pf1N1B4_2840 -0.6 -2.9 Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-) compare
Pf1N1B4_5653 -0.6 -2.2 CobN component of cobalt chelatase involved in B12 biosynthesis compare
Pf1N1B4_4393 -0.6 -0.9 Ferredoxin reductase compare
Pf1N1B4_5269 -0.6 -1.5 hypothetical protein compare
Pf1N1B4_2096 -0.6 -1.6 Protein serine/threonine phosphatase PrpC, regulation of stationary phase compare
Pf1N1B4_4723 -0.6 -2.1 UPF0141 membrane protein YijP possibly required for phosphoethanolamine modification of lipopolysaccharide compare
Pf1N1B4_4745 -0.6 -1.4 Transcriptional regulator, LysR family compare
Pf1N1B4_656 -0.6 -3.9 Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) compare
Pf1N1B4_5043 -0.6 -1.7 hypothetical protein compare
Pf1N1B4_5561 -0.6 -2.1 hypothetical protein compare
Pf1N1B4_715 -0.6 -2.8 Iron-regulated protein A precursor compare
Pf1N1B4_4007 -0.6 -1.8 sigma-54 dependent transcriptional regulator compare
Pf1N1B4_4198 -0.6 -1.2 4-hydroxybenzoate transporter compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N1B4 in temperature experiments