Experiment set5IT016 for Bifidobacterium breve UCC2003

Compare to:

Recovery broth with Sodium nitrate 200 mM

200 most important genes:

  gene name fitness t score description  
BBR_RS10255 -6.4 -4.4 chromosomal replication initiator protein DnaA compare
BBR_RS15070 -5.5 -3.8 endolytic transglycosylase MltG compare
BBR_RS17155 -4.1 -2.0 cell division protein SepF compare
BBR_RS15085 -3.7 -2.5 3-dehydroquinate synthase compare
BBR_RS13300 -3.5 -2.4 5-(carboxyamino)imidazole ribonucleotide synthase compare
BBR_RS18565 -3.3 -2.2 CHAP domain-containing protein compare
BBR_RS11540 -3.2 -4.3 DUF1727 domain-containing protein compare
BBR_RS12590 -3.1 -4.2 beta-1,6-N-acetylglucosaminyltransferase compare
BBR_RS20480 -3.0 -1.5 membrane protein compare
BBR_RS15090 -3.0 -2.0 type II 3-dehydroquinate dehydratase compare
BBR_RS16430 -2.9 -3.9 nucleotide pyrophosphatase compare
BBR_RS10625 -2.7 -2.5 FHA domain-containing protein compare
BBR_RS14370 -2.6 -4.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
BBR_RS12545 -2.6 -5.0 DUF4012 domain-containing protein compare
BBR_RS21015 -2.5 -3.1 hypothetical protein compare
BBR_RS19125 -2.5 -10.5 hypothetical protein compare
BBR_RS20455 -2.5 -8.0 thioredoxin-disulfide reductase compare
BBR_RS12375 -2.5 -1.7 pantetheine-phosphate adenylyltransferase compare
BBR_RS14540 -2.4 -2.8 Na+/H+ antiporter NhaA compare
BBR_RS12235 -2.3 -1.6 hypothetical protein compare
BBR_RS10620 -2.3 -4.7 phosphoprotein phosphatase compare
BBR_RS16675 -2.3 -4.0 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
BBR_RS16955 -2.3 -3.0 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
BBR_RS14260 -2.2 -1.8 ABC transporter ATP-binding protein compare
BBR_RS15915 -2.2 -1.5 type II toxin-antitoxin system antitoxin, RelB/DinJ family compare
BBR_RS14190 -2.2 -8.8 transcriptional regulator compare
BBR_RS19190 -2.1 -7.1 3-deoxy-7-phosphoheptulonate synthase compare
BBR_RS14265 -2.1 -4.7 Solute-binding protein of ABC transporter system for metals compare
BBR_RS15520 -2.1 -3.7 shikimate 5-dehydrogenase compare
BBR_RS13635 -2.1 -8.2 carbamoyl-phosphate synthase large subunit compare
BBR_RS15455 -2.0 -2.4 orotate phosphoribosyltransferase compare
BBR_RS20465 -1.9 -7.2 chromosome partitioning protein compare
BBR_RS14495 -1.9 -3.8 trigger factor compare
BBR_RS13370 -1.9 -3.0 phosphoribosylamine--glycine ligase compare
BBR_RS20885 -1.9 -1.3 hypothetical protein compare
BBR_RS16960 -1.9 -3.0 transcriptional regulator MraZ compare
BBR_RS19120 -1.8 -7.3 helicase compare
BBR_RS19450 -1.8 -1.7 GTPase ObgE compare
BBR_RS15180 -1.8 -6.3 long-chain fatty acid--CoA ligase compare
BBR_RS19160 -1.8 -2.0 phosphate ABC transporter permease subunit PstC compare
BBR_RS13805 -1.7 -2.8 hypothetical protein compare
BBR_RS19155 -1.7 -7.4 phosphate ABC transporter, permease protein PstA compare
BBR_RS13070 -1.7 -1.4 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
BBR_RS11720 -1.7 -4.3 DUF2469 domain-containing protein compare
BBR_RS19070 -1.6 -1.3 50S ribosomal protein L33 compare
BBR_RS16640 -1.5 -2.7 ABC transporter permease compare
BBR_RS13820 -1.5 -1.8 ATP-binding protein compare
BBR_RS12605 -1.5 -3.4 glycosyltransferase family 2 protein compare
BBR_RS16635 -1.4 -2.1 ABC transporter ATP-binding protein compare
BBR_RS13630 -1.4 -4.6 carbamoyl-phosphate synthase small subunit compare
BBR_RS13980 -1.4 -4.9 HD domain-containing protein compare
BBR_RS18175 -1.4 -1.6 GTP cyclohydrolase I FolE compare
BBR_RS10755 -1.4 -4.5 adenylosuccinate synthase compare
BBR_RS15080 -1.4 -2.0 chorismate synthase compare
BBR_RS10740 -1.3 -1.1 tRNA-Gly compare
BBR_RS19435 -1.3 -2.0 pyridoxal phosphate-dependent aminotransferase compare
BBR_RS16750 -1.3 -2.5 ParA family protein compare
BBR_RS19465 -1.3 -1.8 ribonuclease E/G compare
BBR_RS10905 -1.3 -3.1 nucleotide exchange factor GrpE compare
BBR_RS16490 -1.3 -3.2 polyprenyl synthase compare
BBR_RS13030 -1.2 -0.9 cell division ATP-binding protein FtsE compare
BBR_RS12940 -1.2 -6.3 hypothetical protein compare
BBR_RS18725 -1.2 -2.1 ribonuclease HI compare
BBR_RS12295 -1.2 -1.2 RNA-binding protein compare
BBR_RS19355 -1.2 -1.6 tRNA-Gly compare
BBR_RS13735 -1.2 -1.4 Lon protease compare
BBR_RS18735 -1.2 -6.3 hypothetical protein compare
BBR_RS16985 -1.2 -2.4 transcriptional repressor LexA compare
BBR_RS15055 -1.1 -2.1 hypothetical protein compare
BBR_RS13035 -1.1 -0.7 ABC transporter permease compare
BBR_RS14280 -1.1 -1.6 dephospho-CoA kinase compare
BBR_RS18035 -1.1 -1.7 oligoribonuclease compare
BBR_RS14205 -1.1 -1.6 hypothetical protein compare
BBR_RS15660 -1.1 -3.3 Holliday junction branch migration DNA helicase RuvB compare
BBR_RS15450 -1.1 -3.4 dihydroorotate dehydrogenase compare
BBR_RS21170 -1.1 -5.7 membrane protein insertion efficiency factor YidD compare
BBR_RS18215 -1.0 -5.2 AI-2E family transporter compare
BBR_RS19540 -1.0 -1.0 homoserine dehydrogenase compare
BBR_RS15425 -1.0 -2.0 aspartate carbamoyltransferase compare
BBR_RS19395 -1.0 -1.8 hypothetical protein compare
BBR_RS17510 -1.0 -4.2 VWA domain-containing protein compare
BBR_RS11185 -1.0 -1.7 type I DNA topoisomerase compare
BBR_RS12365 -1.0 -3.4 DUF177 domain-containing protein compare
BBR_RS17880 -0.9 -1.7 nucleotidyltransferase compare
BBR_RS16425 -0.9 -1.6 DUF3071 domain-containing protein compare
BBR_RS20460 -0.9 -2.8 chromosome partitioning protein ParB compare
BBR_RS15050 -0.9 -1.9 DUF948 domain-containing protein compare
BBR_RS13490 -0.9 -1.2 30S ribosomal protein S7 compare
BBR_RS12355 -0.9 -2.5 ribonuclease III compare
BBR_RS10940 -0.9 -5.7 DedA family protein compare
BBR_RS19165 -0.9 -1.4 phosphate ABC transporter substrate-binding protein PstS compare
BBR_RS13640 -0.9 -2.4 orotidine-5'-phosphate decarboxylase compare
BBR_RS16905 -0.9 -3.4 hypothetical protein compare
BBR_RS11510 -0.9 -2.1 signal recognition particle-docking protein FtsY compare
BBR_RS16950 -0.9 -1.8 hypothetical protein compare
BBR_RS16605 -0.9 -5.0 hypothetical protein compare
BBR_RS14210 -0.9 -0.5 hypothetical protein compare
BBR_RS16555 -0.9 -0.7 DNA translocase FtsK compare
BBR_RS16255 -0.8 -1.5 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE compare
BBR_RS10640 -0.8 -6.6 alpha/beta hydrolase compare
BBR_RS14215 -0.8 -1.6 peptidase compare
BBR_RS16530 -0.8 -2.8 recombinase RecA compare
BBR_RS18180 -0.8 -4.3 ATP-dependent zinc metalloprotease FtsH compare
BBR_RS14240 -0.8 -2.7 1,4-alpha-glucan branching protein GlgB compare
BBR_RS10615 -0.8 -3.5 FtsW/RodA/SpoVE family cell cycle protein compare
BBR_RS19815 -0.8 -6.5 ABC transporter permease compare
BBR_RS11640 -0.8 -1.5 hypothetical protein compare
BBR_RS11175 -0.8 -5.5 penicillin-binding protein compare
BBR_RS15805 -0.8 -2.4 prolipoprotein diacylglyceryl transferase compare
BBR_RS17495 -0.7 -3.8 DUF58 domain-containing protein compare
BBR_RS14140 -0.7 -1.3 Ppx/GppA family phosphatase compare
BBR_RS13960 -0.7 -1.5 thiamine biosynthesis protein ThiS compare
BBR_RS15445 -0.7 -2.2 dihydroorotate dehydrogenase electron transfer subunit compare
BBR_RS10915 -0.7 -2.8 MerR family DNA-binding transcriptional regulator compare
BBR_RS12975 -0.7 -4.5 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS17490 -0.7 -4.4 MoxR family ATPase compare
BBR_RS20710 -0.7 -3.6 hypothetical protein compare
BBR_RS11505 -0.7 -5.5 TetR/AcrR family transcriptional regulator compare
BBR_RS20435 -0.7 -0.7 CCA tRNA nucleotidyltransferase compare
BBR_RS10900 -0.7 -0.6 molecular chaperone DnaK compare
BBR_RS19820 -0.7 -5.7 ATP-binding protein of ABC transporter system compare
BBR_RS13770 -0.7 -1.4 DNA repair protein RecO compare
BBR_RS15435 -0.7 -1.8 dihydroorotase compare
BBR_RS14200 -0.7 -2.2 WhiB family transcriptional regulator compare
BBR_RS11255 -0.7 -4.6 hypothetical protein compare
BBR_RS14615 -0.7 -3.9 histidine kinase compare
BBR_RS16135 -0.7 -1.2 peptide deformylase compare
BBR_RS20850 -0.7 -0.5 resolvase compare
BBR_RS19170 -0.6 -4.9 DNA-binding response regulator compare
BBR_RS12785 -0.6 -1.1 transcriptional regulator compare
BBR_RS17460 -0.6 -2.8 TPM domain-containing protein compare
BBR_RS12030 -0.6 -2.0 F0F1 ATP synthase subunit epsilon compare
BBR_RS12245 -0.6 -1.1 polyribonucleotide nucleotidyltransferase compare
BBR_RS15230 -0.6 -2.1 elongation factor 4 compare
BBR_RS11205 -0.6 -2.6 HPr family phosphocarrier protein compare
BBR_RS14275 -0.6 -0.8 30S ribosomal protein S1 compare
BBR_RS16070 -0.6 -1.6 hypothetical protein compare
BBR_RS18795 -0.6 -1.5 tRNA pseudouridine(38-40) synthase TruA compare
BBR_RS18690 -0.6 -2.6 diacylglycerol kinase compare
BBR_RS16940 -0.6 -1.4 hypothetical protein compare
BBR_RS20705 -0.6 -1.5 hypothetical protein compare
BBR_RS11770 -0.6 -1.7 chorismate mutase compare
BBR_RS12325 -0.6 -3.2 type 1 glutamine amidotransferase compare
BBR_RS11595 -0.6 -2.2 50S ribosomal protein L9 compare
BBR_RS15155 -0.6 -1.8 histidine triad nucleotide-binding protein compare
BBR_RS17505 -0.6 -3.6 VWA domain-containing protein compare
BBR_RS15440 -0.6 -1.4 orotidine-5'-phosphate decarboxylase compare
BBR_RS13830 -0.6 -0.6 DUF4191 domain-containing protein compare
BBR_RS12805 -0.6 -1.4 hypothetical protein compare
BBR_RS19115 -0.6 -1.4 hypothetical protein compare
BBR_RS14230 -0.6 -1.8 HAMP domain-containing histidine kinase compare
BBR_RS12340 -0.6 -2.0 Arc family DNA-binding protein compare
BBR_RS16655 -0.5 -2.3 tyrosine recombinase XerC compare
BBR_RS16650 -0.5 -2.9 ABC transporter substrate-binding protein compare
BBR_RS12980 -0.5 -3.7 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS15525 -0.5 -2.3 RNase adapter RapZ compare
BBR_RS13845 -0.5 -3.0 dipeptidase compare
BBR_RS14840 -0.5 -2.7 IS3 family transposase compare
BBR_RS20910 -0.5 -0.9 DUF1829 domain-containing protein compare
BBR_RS12720 -0.5 -0.6 hypothetical protein compare
BBR_RS17030 -0.5 -1.9 bifunctional 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide isomerase/phosphoribosylanthranilate isomerase PriA compare
BBR_RS11950 -0.5 -2.3 tRNA-Tyr compare
BBR_RS12610 -0.5 -2.0 capsular polysaccharide biosynthesis protein compare
BBR_RS17440 -0.5 -0.6 DUF3027 domain-containing protein compare
BBR_RS16075 -0.5 -2.2 hypothetical protein compare
BBR_RS16610 -0.5 -1.9 hypothetical protein compare
BBR_RS10265 -0.5 -3.2 DNA replication and repair protein RecF compare
BBR_RS17585 -0.5 -2.0 PTS fructose transporter subunit IIA compare
BBR_RS10725 -0.5 -4.5 Lead, cadmium, zinc and mercury transporting ATPase compare
BBR_RS18635 -0.5 -1.9 PspC domain-containing protein compare
BBR_RS15210 -0.5 -2.8 branched-chain amino acid aminotransferase compare
BBR_RS20745 -0.5 -1.1 hypothetical protein compare
BBR_RS19755 -0.5 -3.1 glycosyl transferase compare
BBR_RS13450 -0.5 -1.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BBR_RS18185 -0.5 -2.0 hypoxanthine phosphoribosyltransferase compare
BBR_RS19650 -0.5 -4.1 NUDIX hydrolase compare
BBR_RS19750 -0.5 -4.1 LTA synthase family protein compare
BBR_RS20475 -0.5 -3.9 KH domain-containing protein compare
BBR_RS17480 -0.5 -1.9 hypothetical protein compare
BBR_RS17640 -0.5 -0.6 DNA-directed RNA polymerase subunit omega compare
BBR_RS10990 -0.5 -1.9 recombination protein RecR compare
BBR_RS13215 -0.5 -1.1 hypothetical protein compare
BBR_RS15130 -0.5 -1.2 metal-sulfur cluster assembly factor compare
BBR_RS16755 -0.5 -1.8 site-specific tyrosine recombinase XerD compare
BBR_RS20440 -0.5 -2.0 NUDIX hydrolase compare
BBR_RS12300 -0.5 -1.9 30S ribosomal protein S16 compare
BBR_RS17500 -0.5 -2.1 hypothetical protein compare
BBR_RS12045 -0.5 -1.5 hypothetical protein compare
BBR_RS13985 -0.4 -2.0 membrane protein compare
BBR_RS19655 -0.4 -3.3 hypothetical protein compare
BBR_RS11515 -0.4 -3.6 ammonium transporter compare
BBR_RS17515 -0.4 -2.1 hypothetical protein compare
BBR_RS19740 -0.4 -3.8 DUF2142 domain-containing protein compare
BBR_RS15685 -0.4 -2.8 hypothetical protein compare
BBR_RS16040 -0.4 -1.6 hypothetical protein compare
BBR_RS19095 -0.4 -3.3 magnesium transporter compare
BBR_RS16240 -0.4 -1.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD compare
BBR_RS12305 -0.4 -2.0 endonuclease/exonuclease/phosphatase family protein compare
BBR_RS20700 -0.4 -1.2 ribulose phosphate epimerase compare
BBR_RS14475 -0.4 -2.5 formate C-acetyltransferase compare


Specific Phenotypes

None in this experiment

For Bifidobacterium breve UCC2003 in stress experiments

For stress Sodium nitrate across organisms