Experiment set5IT016 for Bifidobacterium breve UCC2003

Compare to:

Recovery broth with Sodium nitrate 200 mM

200 most detrimental genes:

  gene name fitness t score description  
BBR_RS14400 +1.6 13.7 acetyltransferase compare
BBR_RS10285 +1.2 2.5 membrane protein compare
BBR_RS15845 +1.2 1.2 hypothetical protein compare
BBR_RS16220 +1.1 1.6 DNA cytosine methyltransferase compare
BBR_RS20925 +1.1 2.4 amino acid permease compare
BBR_RS19270 +1.1 1.4 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase compare
BBR_RS20920 +1.0 3.7 hypothetical protein compare
BBR_RS19350 +1.0 1.6 tRNA-Val compare
BBR_RS17775 +0.8 4.2 LacI family DNA-binding transcriptional regulator compare
BBR_RS16020 +0.8 2.6 hypothetical protein compare
BBR_RS18170 +0.8 2.2 dihydropteroate synthase compare
BBR_RS20775 +0.8 2.1 DUF4230 domain-containing protein compare
BBR_RS20430 +0.7 1.6 hypothetical protein compare
BBR_RS18755 +0.7 1.3 30S ribosome-binding factor RbfA compare
BBR_RS16845 +0.7 1.4 bifunctional folylpolyglutamate synthase/dihydrofolate synthase compare
BBR_RS16035 +0.7 1.4 hypothetical protein compare
BBR_RS14965 +0.6 2.4 DUF2975 domain-containing protein compare
BBR_RS17415 +0.6 2.3 hypothetical protein compare
BBR_RS12775 +0.6 2.6 hypothetical protein compare
BBR_RS16855 +0.6 2.8 NUDIX domain-containing protein compare
BBR_RS17650 +0.6 1.8 cell filamentation protein Fic compare
BBR_RS20545 +0.6 3.4 hypothetical protein compare
BBR_RS20760 +0.6 0.8 hypothetical protein compare
BBR_RS16535 +0.6 1.1 DUF3046 domain-containing protein compare
BBR_RS19760 +0.6 1.0 polysaccharide ABC transporter ATPase compare
BBR_RS12620 +0.6 4.1 glycosyltransferase family 1 protein compare
BBR_RS14985 +0.6 1.2 ATP-dependent DNA helicase PcrA compare
BBR_RS20960 +0.6 1.1 hypothetical protein compare
BBR_RS20980 +0.5 1.0 hypothetical protein compare
BBR_RS16195 +0.5 1.7 hypothetical protein compare
BBR_RS14080 +0.5 1.0 hypothetical protein compare
BBR_RS14865 +0.5 2.4 haloacid dehalogenase-like hydrolase compare
BBR_RS12830 +0.5 3.2 G5 domain-containing protein compare
BBR_RS18525 +0.5 1.2 hypothetical protein compare
BBR_RS14015 +0.5 1.9 hypothetical protein compare
BBR_RS14065 +0.5 1.3 TnpV protein compare
BBR_RS14425 +0.4 2.4 histidine phosphatase family protein compare
BBR_RS15350 +0.4 1.5 plasmid pRiA4b ORF-3 family protein compare
BBR_RS20810 +0.4 0.6 pirin compare
BBR_RS20690 +0.4 1.3 hypothetical protein compare
BBR_RS16285 +0.4 1.6 magnesium transporter CorA family protein compare
BBR_RS20935 +0.4 1.5 hypothetical protein compare
BBR_RS16440 +0.4 0.9 SGNH/GDSL hydrolase family protein compare
BBR_RS16080 +0.4 1.1 DUF1287 domain-containing protein compare
BBR_RS20765 +0.4 1.7 50S ribosomal protein L31 compare
BBR_RS16060 +0.4 0.9 hypothetical protein compare
BBR_RS13320 +0.4 1.5 ABC transporter ATP-binding protein compare
BBR_RS20170 +0.4 3.4 LacI family transcriptional regulator compare
BBR_RS15955 +0.4 1.4 hypothetical protein compare
BBR_RS15880 +0.4 1.1 hypothetical protein compare
BBR_RS16175 +0.4 1.2 DNA integration/recombination/inversion protein compare
BBR_RS20800 +0.4 0.8 hypothetical protein compare
BBR_RS13715 +0.4 1.4 DUF3107 domain-containing protein compare
BBR_RS16515 +0.4 1.3 preprotein translocase subunit SecA compare
BBR_RS17075 +0.4 2.2 dihydrodipicolinate synthase family protein compare
BBR_RS12550 +0.4 3.0 sugar transferase compare
BBR_RS14885 +0.4 1.2 cyclomaltodextrinase compare
BBR_RS20220 +0.4 3.1 sulfite exporter TauE/SafE family protein compare
BBR_RS16685 +0.4 0.5 alcohol dehydrogenase compare
BBR_RS21000 +0.4 0.7 hypothetical protein compare
BBR_RS19905 +0.4 0.4 methionine--tRNA ligase compare
BBR_RS20070 +0.4 2.8 sugar ABC transporter permease compare
BBR_RS14220 +0.4 2.0 phosphomannomutase compare
BBR_RS16780 +0.4 1.4 hypothetical protein compare
BBR_RS14780 +0.4 1.0 XRE family transcriptional regulator compare
BBR_RS14970 +0.3 0.8 transcriptional regulator compare
BBR_RS14990 +0.3 1.5 DUF4418 domain-containing protein compare
BBR_RS21050 +0.3 1.2 hypothetical protein compare
BBR_RS20915 +0.3 1.0 hypothetical protein compare
BBR_RS16330 +0.3 2.2 LacI family transcriptional regulator compare
BBR_RS18440 +0.3 2.2 hypothetical protein compare
BBR_RS14675 +0.3 1.4 IS256 family transposase compare
BBR_RS21085 +0.3 1.5 hypothetical protein compare
BBR_RS13280 +0.3 1.9 ABC transporter permease compare
BBR_RS15275 +0.3 2.3 hypothetical protein compare
BBR_RS17905 +0.3 3.2 2-hydroxyglutaryl-CoA dehydratase activator compare
BBR_RS13455 +0.3 1.0 formate-dependent phosphoribosylglycinamide formyltransferase compare
BBR_RS14085 +0.3 0.4 nicotinate-nucleotide adenylyltransferase compare
BBR_RS12515 +0.3 2.4 LacI family transcriptional regulator compare
BBR_RS20060 +0.3 1.9 DUF624 domain-containing protein compare
BBR_RS15325 +0.3 0.9 hypothetical protein compare
BBR_RS14955 +0.3 2.1 hypothetical protein compare
BBR_RS20085 +0.3 2.1 histidine phosphatase family protein compare
BBR_RS15235 +0.3 1.6 coproporphyrinogen III oxidase compare
BBR_RS21155 +0.3 1.8 hypothetical protein compare
BBR_RS13430 +0.3 2.1 hypothetical protein compare
BBR_RS19645 +0.3 1.8 RNA degradosome polyphosphate kinase compare
BBR_RS19325 +0.3 0.7 hypothetical protein compare
BBR_RS20290 +0.3 2.6 hypothetical protein compare
BBR_RS12880 +0.3 1.9 Crp/Fnr family transcriptional regulator compare
BBR_RS16670 +0.3 1.3 hypothetical protein compare
BBR_RS20740 +0.3 1.4 hypothetical protein compare
BBR_RS16030 +0.3 1.6 hypothetical protein compare
BBR_RS15860 +0.3 0.4 DUF2316 domain-containing protein compare
BBR_RS15100 +0.3 2.6 murein L,D-transpeptidase compare
BBR_RS19240 +0.3 2.4 LacI family transcriptional regulator compare
BBR_RS15760 +0.3 0.7 MerR family transcriptional regulator compare
BBR_RS13675 +0.3 1.6 glutaredoxin-like protein compare
BBR_RS21055 +0.3 0.6 hypothetical protein compare
BBR_RS14850 +0.3 0.9 VOC family protein compare
BBR_RS15840 +0.3 1.5 VanZ family protein compare
BBR_RS13945 +0.3 1.0 Txe/YoeB family addiction module toxin compare
BBR_RS20105 +0.3 2.6 YhgE/Pip domain-containing protein compare
BBR_RS21070 +0.3 1.4 DNA-binding protein compare
BBR_RS17055 +0.3 2.1 histidinol dehydrogenase compare
BBR_RS20160 +0.3 2.6 Solute-binding protein of ABC transporter system for sugars compare
BBR_RS19800 +0.3 2.3 glycosyltransferase involved in cell wall biogenesis compare
BBR_RS20320 +0.3 2.5 PTS ascorbate transporter subunit IIC compare
BBR_RS19330 +0.3 1.2 hypothetical protein compare
BBR_RS20080 +0.3 2.4 ABC transporter substrate-binding protein compare
BBR_RS14040 +0.3 1.1 GNAT family N-acetyltransferase compare
BBR_RS15970 +0.3 1.2 hypothetical protein compare
BBR_RS13665 +0.3 1.6 phospholipase/carboxylesterase compare
BBR_RS15410 +0.3 1.1 methylenetetrahydrofolate reductase [NAD(P)H] compare
BBR_RS21160 +0.3 2.4 DUF2961 domain-containing protein compare
BBR_RS13040 +0.3 0.4 CHAP domain-containing protein compare
BBR_RS16205 +0.3 1.7 type II restriction-modification system restriction subunit, PstI isoschizomer compare
BBR_RS13420 +0.3 0.8 DUF4230 domain-containing protein compare
BBR_RS10450 +0.3 2.3 ATP-binding protein compare
BBR_RS20785 +0.3 0.7 PadR family transcriptional regulator compare
BBR_RS18045 +0.3 0.4 undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BBR_RS16320 +0.3 1.8 metal-independent alpha-mannosidase compare
BBR_RS15340 +0.3 1.0 hypothetical protein compare
BBR_RS18770 +0.3 2.1 hypothetical protein compare
BBR_RS20955 +0.3 0.5 hypothetical protein compare
BBR_RS20215 +0.3 2.4 sodium:proton antiporter compare
BBR_RS20155 +0.3 2.4 sugar ABC transporter permease compare
BBR_RS16870 +0.3 1.4 ROK family protein compare
BBR_RS15360 +0.3 0.7 hypothetical protein compare
BBR_RS14680 +0.3 1.5 Fic family protein compare
BBR_RS13890 +0.3 1.9 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
BBR_RS17580 +0.3 1.2 PTS fructose transporter subunit IIB compare
BBR_RS16710 +0.3 0.9 hypothetical protein compare
BBR_RS14775 +0.3 1.2 hypothetical protein compare
BBR_RS14570 +0.2 1.5 ATP-binding protein compare
BBR_RS20255 +0.2 2.3 PTS N-acetylglucosamine transporter subunit IIABC compare
BBR_RS17975 +0.2 1.3 very short patch repair endonuclease compare
BBR_RS10555 +0.2 0.7 DUF3073 domain-containing protein compare
BBR_RS14320 +0.2 1.6 Nif3-like dinuclear metal center hexameric protein compare
BBR_RS20230 +0.2 2.2 hypothetical protein compare
BBR_RS10430 +0.2 2.1 LacI family transcriptional regulator compare
BBR_RS14875 +0.2 1.5 uracil-xanthine permease compare
BBR_RS15820 +0.2 1.1 SOS response-associated peptidase compare
BBR_RS14005 +0.2 1.3 haloacid dehalogenase compare
BBR_RS20100 +0.2 2.2 YhgE/Pip domain-containing protein compare
BBR_RS13525 +0.2 0.9 CrcB family protein compare
BBR_RS13470 +0.2 1.7 amino acid lyase compare
BBR_RS20175 +0.2 2.0 LacI family transcriptional regulator compare
BBR_RS20575 +0.2 1.6 hypothetical protein compare
BBR_RS12645 +0.2 1.3 acyltransferase compare
BBR_RS20815 +0.2 0.9 potassium transporter Trk compare
BBR_RS13550 +0.2 1.6 DUF47 domain-containing protein compare
BBR_RS21030 +0.2 1.0 hypothetical protein compare
BBR_RS16895 +0.2 1.4 MFS transporter compare
BBR_RS14595 +0.2 1.6 O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase compare
BBR_RS17615 +0.2 1.4 phosphoserine phosphatase SerB compare
BBR_RS13835 +0.2 1.5 FAD-dependent oxidoreductase compare
BBR_RS19375 +0.2 0.3 acyl-CoA carboxylase subunit beta compare
BBR_RS16890 +0.2 0.8 glucose/galactose transporter compare
BBR_RS10890 +0.2 1.7 LacI family transcriptional regulator compare
BBR_RS13315 +0.2 1.1 hypothetical protein compare
BBR_RS19030 +0.2 1.9 LacI family transcriptional regulator compare
BBR_RS20095 +0.2 1.9 NADPH-dependent oxidoreductase compare
BBR_RS18395 +0.2 1.1 hypothetical protein compare
BBR_RS14980 +0.2 0.9 xanthine phosphoribosyltransferase compare
BBR_RS20135 +0.2 2.0 alpha-glucosidase compare
BBR_RS20250 +0.2 1.2 transcriptional regulator compare
BBR_RS15605 +0.2 1.3 PAC2 family protein compare
BBR_RS15865 +0.2 0.7 GNAT family N-acetyltransferase compare
BBR_RS10295 +0.2 1.6 hypothetical protein compare
BBR_RS14810 +0.2 1.6 ROK family protein compare
BBR_RS13855 +0.2 1.4 ABC transporter ATP-binding protein compare
BBR_RS17740 +0.2 1.0 hypothetical protein compare
BBR_RS16095 +0.2 1.0 imidazole glycerol phosphate synthase subunit HisF compare
BBR_RS13560 +0.2 1.5 MATE family efflux transporter compare
BBR_RS12925 +0.2 0.7 hypothetical protein compare
BBR_RS14120 +0.2 1.2 aldo/keto reductase compare
BBR_RS13730 +0.2 1.4 hypothetical protein compare
BBR_RS15570 +0.2 1.0 branched-chain amino acid transport system II carrier protein compare
BBR_RS14895 +0.2 0.9 DUF47 domain-containing protein compare
BBR_RS12310 +0.2 0.3 signal recognition particle protein compare
BBR_RS12560 +0.2 1.3 transposase compare
BBR_RS16875 +0.2 1.4 NagC family transcriptional regulator compare
BBR_RS16885 +0.2 1.3 carbohydrate kinase compare
BBR_RS14345 +0.2 1.2 hypothetical protein compare
BBR_RS13590 +0.2 0.9 hypothetical protein compare
BBR_RS20125 +0.2 1.7 SIR2 family protein compare
BBR_RS14460 +0.2 1.3 amidohydrolase compare
BBR_RS13655 +0.2 1.1 hypothetical protein compare
BBR_RS17240 +0.2 1.3 hypothetical protein compare
BBR_RS16085 +0.2 1.3 anthranilate synthase component I compare
BBR_RS13530 +0.2 1.1 CrcB family protein compare
BBR_RS16345 +0.2 1.4 hypothetical protein compare
BBR_RS17035 +0.2 0.8 imidazole glycerol phosphate synthase subunit HisH compare
BBR_RS20225 +0.2 1.7 phospholipase/carboxylesterase compare
BBR_RS10745 +0.2 1.6 DUF6 domain-containing protein compare
BBR_RS15965 +0.2 0.9 transporter, drug/metabolite exporter family compare
BBR_RS14500 +0.2 1.3 hypothetical protein compare
BBR_RS20635 +0.2 0.7 hypothetical protein compare
BBR_RS18790 +0.2 1.8 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Bifidobacterium breve UCC2003 in stress experiments

For stress Sodium nitrate across organisms