Experiment set5IT015 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Uridine carbon source

200 most important genes:

  gene name fitness t score description  
AO353_05115 -4.7 -9.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_20635 -4.4 -13.7 3-isopropylmalate dehydrogenase compare
AO353_08185 -4.4 -10.9 methionine biosynthesis protein MetW compare
AO353_07230 -4.4 -18.6 anthranilate synthase compare
AO353_08345 -4.3 -9.9 dihydroxy-acid dehydratase compare
AO353_12070 -4.2 -10.9 imidazoleglycerol-phosphate dehydratase compare
AO353_12515 -4.2 -24.1 glutamate synthase compare
AO353_12085 -4.1 -11.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_08685 -4.1 -6.9 N-acetylglutamate synthase compare
AO353_14505 -4.1 -14.7 ketol-acid reductoisomerase compare
AO353_12090 -4.0 -2.8 imidazole glycerol phosphate synthase subunit HisF compare
AO353_13165 -4.0 -7.2 ATP phosphoribosyltransferase regulatory subunit compare
AO353_20625 -4.0 -5.4 3-isopropylmalate dehydratase compare
AO353_14500 -4.0 -7.6 acetolactate synthase 3 regulatory subunit compare
AO353_20620 -3.9 -8.0 isopropylmalate isomerase compare
AO353_15295 -3.9 -8.5 division/cell wall cluster transcriptional repressor MraZ compare
AO353_12520 -3.9 -14.4 glutamate synthase compare
AO353_20665 -3.9 -12.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_02075 -3.8 -13.9 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_12500 -3.8 -2.6 shikimate kinase compare
AO353_07215 -3.8 -9.2 anthranilate phosphoribosyltransferase compare
AO353_08465 -3.8 -17.3 phosphoenolpyruvate-protein phosphotransferase compare
AO353_20175 -3.8 -3.6 ATP-dependent Clp protease proteolytic subunit compare
AO353_07210 -3.8 -6.7 indole-3-glycerol-phosphate synthase compare
AO353_12365 -3.7 -5.7 phosphoribosyl-AMP cyclohydrolase compare
AO353_08180 -3.7 -15.5 homoserine O-acetyltransferase compare
AO353_20695 -3.6 -8.1 O-succinylhomoserine sulfhydrylase compare
AO353_05110 -3.6 -12.6 histidinol dehydrogenase compare
AO353_00310 -3.6 -12.4 transaldolase compare
AO353_04105 -3.6 -9.2 argininosuccinate synthase compare
AO353_13070 -3.6 -10.7 phosphoserine phosphatase compare
AO353_12075 -3.5 -10.8 imidazole glycerol phosphate synthase subunit HisH compare
AO353_10710 -3.4 -5.7 tryptophan synthase subunit beta compare
AO353_22375 -3.4 -6.0 cytochrome c-550 PedF compare
AO353_05800 -3.4 -7.5 hypothetical protein compare
AO353_10025 -3.3 -18.0 pyruvate carboxylase subunit B compare
AO353_14495 -3.3 -14.1 acetolactate synthase 3 catalytic subunit compare
AO353_20825 -3.3 -10.6 ABC transporter permease conserved
AO353_22800 -3.2 -4.9 sulfite reductase compare
AO353_04155 -3.2 -13.7 ornithine carbamoyltransferase compare
AO353_14370 -3.2 -9.7 glucose-6-phosphate isomerase compare
AO353_06495 -3.2 -7.9 gamma-glutamyl phosphate reductase compare
AO353_08015 -3.1 -9.2 5,10-methylenetetrahydrofolate reductase compare
AO353_09240 -3.1 -3.0 acetylglutamate kinase compare
AO353_02710 -3.1 -15.0 (p)ppGpp synthetase compare
AO353_24130 -3.1 -3.7 hypothetical protein compare
AO353_02685 -3.1 -5.4 phosphoribosylglycinamide formyltransferase compare
AO353_08510 -3.1 -7.6 3-phosphoglycerate dehydrogenase compare
AO353_07155 -3.0 -8.7 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_20835 -3.0 -6.7 Ribokinase (EC 2.7.1.15) (from data) conserved
AO353_02070 -3.0 -9.2 prephenate dehydratase compare
AO353_09000 -3.0 -6.7 argininosuccinate lyase compare
AO353_10030 -2.9 -11.3 pyruvate carboxylase subunit A compare
AO353_12115 -2.9 -3.9 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_03360 -2.9 -10.8 glucose-6-phosphate dehydrogenase compare
AO353_10705 -2.9 -5.2 tryptophan synthase subunit alpha compare
AO353_05225 -2.9 -17.5 hypothetical protein compare
AO353_12360 -2.8 -11.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_08165 -2.8 -4.6 pyrroline-5-carboxylate reductase compare
AO353_12690 -2.7 -1.7 acyl carrier protein compare
AO353_18780 -2.7 -8.4 cobyrinic acid a,c-diamide synthase compare
AO353_14400 -2.7 -6.0 Fis family transcriptional regulator compare
AO353_14420 -2.7 -6.2 molecular chaperone DnaK compare
AO353_10035 -2.7 -8.2 LysR family transcriptional regulator compare
AO353_00750 -2.7 -5.8 GntR family transcriptional regulator compare
AO353_07220 -2.6 -8.6 anthranilate synthase compare
AO353_08265 -2.6 -7.5 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_14115 -2.5 -8.3 gamma-glutamyl kinase compare
AO353_07290 -2.5 -8.5 mannose-1-phosphate guanylyltransferase compare
AO353_27650 -2.5 -6.1 cell division protein FtsK compare
AO353_00825 -2.4 -5.2 porin compare
AO353_07525 -2.4 -13.3 biotin synthase compare
AO353_08115 -2.4 -7.8 energy transducer TonB compare
AO353_03580 -2.4 -4.7 ATP-dependent DNA helicase RuvB compare
AO353_11340 -2.3 -1.9 MarR family transcriptional regulator compare
AO353_20830 -2.3 -8.4 LacI family transcriptional regulator compare
AO353_20820 -2.3 -9.9 sugar ABC transporter ATP-binding protein conserved
AO353_03365 -2.2 -9.4 transcriptional regulator compare
AO353_09275 -2.2 -4.3 DNA-directed RNA polymerase subunit omega compare
AO353_04355 -2.2 -2.9 homoserine dehydrogenase compare
AO353_02320 -2.1 -8.8 allantoinase compare
AO353_09560 -2.1 -2.4 type VI secretion protein compare
AO353_06045 -2.0 -7.8 exodeoxyribonuclease V subunit beta compare
AO353_06040 -2.0 -4.1 exodeoxyribonuclease V subunit alpha compare
AO353_21455 -2.0 -1.9 cation:proton antiporter compare
AO353_27710 -1.9 -2.6 DNA repair protein compare
AO353_06795 -1.9 -2.2 Isochorismatase compare
AO353_14150 -1.9 -2.5 peptidylprolyl isomerase compare
AO353_05420 -1.9 -2.5 peptide chain release factor 3 compare
AO353_15925 -1.9 -6.9 2-isopropylmalate synthase compare
AO353_06050 -1.9 -7.7 exodeoxyribonuclease V subunit gamma compare
AO353_03590 -1.9 -3.1 crossover junction endodeoxyribonuclease RuvC compare
AO353_01550 -1.8 -5.8 hypothetical protein compare
AO353_26830 -1.8 -4.2 histidine kinase compare
AO353_02250 -1.8 -3.3 chorismate synthase compare
AO353_07315 -1.8 -2.7 rRNA methyltransferase compare
AO353_13925 -1.8 -3.4 XRE family transcriptional regulator compare
AO353_05130 -1.8 -1.7 anti-anti-sigma factor compare
AO353_09745 -1.8 -2.6 hypothetical protein compare
AO353_04325 -1.8 -2.6 hypothetical protein compare
AO353_00460 -1.7 -3.6 TetR family transcriptional regulator compare
AO353_10670 -1.7 -5.5 shikimate dehydrogenase compare
AO353_00495 -1.7 -2.3 DNA topoisomerase I compare
AO353_06080 -1.7 -11.2 methylmalonate-semialdehyde dehydrogenase conserved
AO353_18705 -1.6 -4.6 anti-anti-sigma factor compare
AO353_08470 -1.6 -2.8 RNA pyrophosphohydrolase compare
AO353_13140 -1.6 -6.1 tRNA dimethylallyltransferase compare
AO353_03630 -1.6 -10.4 porin compare
AO353_05490 -1.5 -4.8 transcriptional regulator compare
AO353_19750 -1.5 -2.3 diaminopimelate epimerase compare
AO353_05135 -1.5 -6.8 toluene tolerance protein compare
AO353_10945 -1.5 -3.0 cytochrome C compare
AO353_22415 -1.5 -3.1 alcohol dehydrogenase compare
AO353_08885 -1.5 -9.9 polyphosphate kinase compare
AO353_09720 -1.4 -1.8 hypothetical protein compare
AO353_23495 -1.4 -2.8 SAM-dependent methyltransferase compare
AO353_03615 -1.4 -3.1 cold-shock protein compare
AO353_20815 -1.4 -2.2 LacI family transcriptional regulator compare
AO353_15250 -1.4 -3.5 cytochrome B compare
AO353_07515 -1.4 -1.8 transporter compare
AO353_03605 -1.4 -1.6 FmdB family transcriptional regulator compare
AO353_19055 -1.4 -6.2 universal stress protein UspA compare
AO353_03420 -1.4 -4.2 phosphogluconate dehydratase compare
AO353_12395 -1.4 -4.0 poly(3-hydroxyalkanoate) granule-associated protein PhaF compare
AO353_21830 -1.4 -9.6 chemotaxis protein CheY compare
AO353_13245 -1.4 -6.7 hypothetical protein compare
AO353_11770 -1.4 -1.8 molecular chaperone Hsp33 compare
AO353_04185 -1.4 -4.5 DeoR family transcriptional regulator compare
AO353_06100 -1.4 -1.9 thymidylate synthase compare
AO353_16940 -1.3 -5.3 deoxycytidine triphosphate deaminase compare
AO353_22630 -1.3 -3.7 TetR family transcriptional regulator compare
AO353_09045 -1.3 -2.2 hypothetical protein compare
AO353_16835 -1.3 -2.6 LuxR family transcriptional regulator compare
AO353_11165 -1.3 -6.7 hypothetical protein compare
AO353_01375 -1.3 -6.3 phosphate acyltransferase compare
AO353_03100 -1.3 -1.2 XRE family transcriptional regulator compare
AO353_05625 -1.3 -1.3 transcription elongation factor GreA compare
AO353_07250 -1.3 -2.4 polyamine ABC transporter permease compare
AO353_05075 -1.3 -7.2 adenylylsulfate kinase compare
AO353_04055 -1.3 -1.8 methionine--tRNA ligase compare
AO353_28700 -1.3 -3.0 hypothetical protein compare
AO353_04410 -1.2 -1.6 phosphoribosylglycinamide formyltransferase compare
AO353_06090 -1.2 -6.3 LysR family transcriptional regulator conserved
AO353_08600 -1.2 -3.1 TetR family transcriptional regulator compare
AO353_09155 -1.2 -6.4 amino acid dehydrogenase compare
AO353_04220 -1.2 -3.4 chemotaxis protein CheY compare
AO353_18285 -1.2 -2.2 3-phosphoglycerate kinase compare
AO353_22945 -1.2 -7.4 glycogen branching protein compare
AO353_19060 -1.2 -3.6 CysB family transcriptional regulator compare
AO353_20510 -1.2 -1.2 amidase compare
AO353_20095 -1.2 -3.2 histidine kinase compare
AO353_04175 -1.2 -3.4 glycerol uptake facilitator GlpF compare
AO353_11750 -1.2 -1.7 ATPase compare
AO353_05080 -1.2 -6.5 sulfate adenylyltransferase compare
AO353_24805 -1.2 -4.9 TetR family transcriptional regulator compare
AO353_22365 -1.2 -4.6 hypothetical protein compare
AO353_16805 -1.1 -4.3 recombinase RecA compare
AO353_21330 -1.1 -5.0 RpiR family transcriptional regulator compare
AO353_17885 -1.1 -1.9 hypothetical protein compare
AO353_00650 -1.1 -2.5 cytochrome biogenesis protein compare
AO353_05145 -1.1 -5.1 ABC transporter permease compare
AO353_06085 -1.1 -6.2 omega amino acid--pyruvate aminotransferase conserved
AO353_10225 -1.1 -4.3 methyltransferase compare
AO353_08045 -1.1 -7.6 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_09885 -1.1 -1.5 transcriptional regulator PhoU compare
AO353_24405 -1.1 -1.6 ArsR family transcriptional regulator compare
AO353_11530 -1.1 -5.4 diguanylate cyclase compare
AO353_22370 -1.1 -2.6 branched-chain amino acid ABC transporter substrate-binding protein compare
AO353_05140 -1.1 -5.2 outer membrane lipid asymmetry maintenance protein MlaD compare
AO353_18540 -1.1 -2.4 pseudouridine synthase compare
AO353_07505 -1.1 -5.8 dethiobiotin synthetase compare
AO353_05195 -1.1 -5.5 glmZ(sRNA)-inactivating NTPase compare
AO353_14930 -1.1 -2.6 GntR family transcriptional regulator compare
AO353_20170 -1.0 -3.3 trigger factor compare
AO353_17625 -1.0 -4.8 RNA polymerase subunit sigma compare
AO353_02940 -1.0 -1.8 DNA-binding protein compare
AO353_07520 -1.0 -6.3 8-amino-7-oxononanoate synthase compare
AO353_18890 -1.0 -3.6 cytochrome C compare
AO353_22420 -1.0 -2.3 histidine kinase compare
AO353_12105 -1.0 -4.5 peptidase S41 compare
AO353_06460 -1.0 -5.3 hypothetical protein compare
AO353_03585 -1.0 -2.4 ATP-dependent DNA helicase RuvA compare
AO353_01915 -1.0 -1.7 GlcG protein compare
AO353_08245 -1.0 -2.6 cell division ATP-binding protein FtsE compare
AO353_15725 -0.9 -2.9 hypothetical protein compare
AO353_26090 -0.9 -1.3 hypothetical protein compare
AO353_13685 -0.9 -3.8 3-dehydroquinate dehydratase compare
AO353_09260 -0.9 -4.8 ribonuclease PH compare
AO353_21940 -0.9 -2.7 protein nirG compare
AO353_19145 -0.9 -2.4 protease HtpX compare
AO353_10240 -0.9 -4.2 NAD-dependent dehydratase compare
AO353_03575 -0.9 -3.9 4-hydroxybenzoyl-CoA thioesterase compare
AO353_14405 -0.9 -5.9 ATPase compare
AO353_24440 -0.9 -2.0 reactive intermediate/imine deaminase compare
AO353_28295 -0.9 -2.4 GNAT family acetyltransferase compare
AO353_27995 -0.9 -3.3 RpiR family transcriptional regulator compare
AO353_14915 -0.9 -1.7 (2Fe-2S)-binding protein compare
AO353_20845 -0.9 -2.8 uridine/adenosine nucleosidase (EC 3.2.2.3; EC 3.2.2.7) (from data) compare
AO353_22385 -0.9 -6.2 dehydrogenase compare
AO353_02715 -0.9 -2.5 23S rRNA methyltransferase compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source Uridine in Pseudomonas fluorescens FW300-N2E3

For carbon source Uridine across organisms