Experiment set5IT015 for Pseudomonas fluorescens FW300-N1B4

Compare to:

LB 20C

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_1307 -2.5 -2.5 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_2005 -2.3 -3.5 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_4035 -2.1 -3.5 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
Pf1N1B4_350 -2.0 -7.8 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_3093 -2.0 -3.0 Outer membrane protein H precursor compare
Pf1N1B4_1906 -1.9 -4.2 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_2853 -1.8 -3.0 Pantoate--beta-alanine ligase (EC 6.3.2.1) compare
Pf1N1B4_3812 -1.8 -10.2 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_4038 -1.8 -3.2 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_2491 -1.7 -4.4 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf1N1B4_3168 -1.6 -3.3 AmpG permease compare
Pf1N1B4_4051 -1.6 -4.9 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf1N1B4_2939 -1.5 -5.2 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf1N1B4_2209 -1.4 -7.0 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_2493 -1.4 -2.6 Acyl-CoA dehydrogenase (EC 1.3.8.7) compare
Pf1N1B4_3833 -1.4 -7.6 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_1617 -1.4 -4.7 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_5659 -1.4 -10.2 NfuA Fe-S protein maturation compare
Pf1N1B4_2736 -1.4 -2.7 ATP-dependent RNA helicase PA3950 compare
Pf1N1B4_188 -1.4 -2.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_327 -1.3 -2.7 hypothetical protein compare
Pf1N1B4_2377 -1.3 -6.1 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf1N1B4_4040 -1.3 -2.8 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_3518 -1.3 -3.5 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_141 -1.3 -6.7 PvdE, pyoverdine ABC export system, fused ATPase and permease components compare
Pf1N1B4_2912 -1.3 -2.5 GTP-binding and nucleic acid-binding protein YchF compare
Pf1N1B4_3917 -1.3 -3.2 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf1N1B4_4039 -1.3 -5.4 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_2488 -1.3 -5.2 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf1N1B4_1315 -1.3 -6.8 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_3779 -1.2 -2.2 Hydrolase, alpha/beta fold family functionally coupled to Phosphoribulokinase compare
Pf1N1B4_1335 -1.2 -5.3 Copper metallochaperone, bacterial analog of Cox17 protein compare
Pf1N1B4_2035 -1.2 -4.1 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf1N1B4_387 -1.2 -3.3 hypothetical protein compare
Pf1N1B4_4446 -1.2 -1.4 DNA topoisomerase III (EC 5.99.1.2) compare
Pf1N1B4_2412 -1.1 -3.4 ATP-dependent 23S rRNA helicase DbpA compare
Pf1N1B4_4627 -1.1 -1.6 FIG00957600: hypothetical protein compare
Pf1N1B4_5224 -1.1 -2.0 tRNA-Arg-CCT compare
Pf1N1B4_403 -1.1 -2.0 FIG00965925: hypothetical protein compare
Pf1N1B4_2401 -1.1 -2.2 Lipoprotein, putative compare
Pf1N1B4_4103 -1.1 -2.1 Flagellar synthesis regulator FleN compare
Pf1N1B4_5991 -1.0 -1.8 Transcriptional regulator, AraC family compare
Pf1N1B4_2856 -1.0 -3.5 Poly(A) polymerase (EC 2.7.7.19) compare
Pf1N1B4_1569 -1.0 -7.3 Twin-arginine translocation protein TatC compare
Pf1N1B4_2465 -1.0 -2.2 Two-component response regulator CreB compare
Pf1N1B4_4041 -1.0 -2.7 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
Pf1N1B4_1024 -1.0 -4.4 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf1N1B4_2858 -1.0 -6.7 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_197 -1.0 -2.3 FIG139991: Putative thiamine pyrophosphate-requiring enzyme compare
Pf1N1B4_5463 -1.0 -3.1 hypothetical protein compare
Pf1N1B4_4478 -1.0 -2.5 Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168) compare
Pf1N1B4_4673 -1.0 -3.2 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf1N1B4_4029 -1.0 -2.3 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_4549 -1.0 -2.5 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41) compare
Pf1N1B4_1568 -1.0 -3.4 Twin-arginine translocation protein TatB compare
Pf1N1B4_2713 -0.9 -2.7 FIG00955339: hypothetical protein compare
Pf1N1B4_4544 -0.9 -1.9 Uncharacterized protein ImpA compare
Pf1N1B4_1334 -0.9 -0.8 FIG00955840: hypothetical protein compare
Pf1N1B4_6036 -0.9 -2.7 FIG00953132: hypothetical protein compare
Pf1N1B4_2490 -0.9 -4.3 Biotin synthesis protein BioC compare
Pf1N1B4_1403 -0.9 -4.9 3'-to-5' exoribonuclease RNase R compare
Pf1N1B4_2568 -0.9 -2.6 Translation elongation factor Tu compare
Pf1N1B4_3872 -0.9 -6.7 Putative analog of CcoH, COG3198 compare
Pf1N1B4_2874 -0.9 -1.9 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_932 -0.9 -1.4 FIG00963370: hypothetical protein compare
Pf1N1B4_4755 -0.9 -3.0 ribosomal protein S6 glutaminyl transferase related protein compare
Pf1N1B4_2003 -0.9 -3.2 FIG00956226: hypothetical protein compare
Pf1N1B4_2036 -0.9 -3.1 Phosphate transport system permease protein PstA (TC 3.A.1.7.1) compare
Pf1N1B4_740 -0.9 -1.7 Leucyl-tRNA synthetase compare
Pf1N1B4_4189 -0.9 -4.2 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf1N1B4_3802 -0.9 -1.7 PlcB, ORFX, ORFP, ORFB, ORFA, ldh gene compare
Pf1N1B4_1399 -0.9 -2.5 FIG003573: hypothetical protein compare
Pf1N1B4_3991 -0.9 -2.0 Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family compare
Pf1N1B4_3631 -0.9 -3.3 Flagellar motor rotation protein MotA compare
Pf1N1B4_3143 -0.9 -2.2 RecA protein compare
Pf1N1B4_412 -0.9 -1.8 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) compare
Pf1N1B4_493 -0.9 -2.6 hypothetical protein compare
Pf1N1B4_2878 -0.9 -5.4 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_3415 -0.9 -2.9 Transcriptional regulator, TetR family compare
Pf1N1B4_3129 -0.9 -1.9 Prophage baseplate assembly protein V compare
Pf1N1B4_3685 -0.8 -2.7 Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) compare
Pf1N1B4_1878 -0.8 -6.1 Cytochrome c4 compare
Pf1N1B4_69 -0.8 -1.3 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf1N1B4_2949 -0.8 -1.7 FIG00956396: hypothetical protein compare
Pf1N1B4_4028 -0.8 -2.6 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_3730 -0.8 -2.6 Sodium-dependent transporter compare
Pf1N1B4_578 -0.8 -1.8 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_3709 -0.8 -3.1 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
Pf1N1B4_1052 -0.8 -1.7 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Pf1N1B4_2857 -0.8 -2.5 Poly(A) polymerase (EC 2.7.7.19) compare
Pf1N1B4_2360 -0.8 -1.3 hypothetical protein compare
Pf1N1B4_3985 -0.8 -1.3 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Pf1N1B4_2106 -0.8 -1.8 Hydrogen peroxide-inducible genes activator compare
Pf1N1B4_4030 -0.8 -2.4 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
Pf1N1B4_538 -0.8 -1.5 hypothetical protein compare
Pf1N1B4_1683 -0.8 -1.5 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) compare
Pf1N1B4_4776 -0.8 -2.6 Nicotinamidase (EC 3.5.1.19) compare
Pf1N1B4_5090 -0.8 -2.4 glycosyl transferase, family 2 compare
Pf1N1B4_5813 -0.8 -1.3 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) compare
Pf1N1B4_5976 -0.8 -2.0 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) compare
Pf1N1B4_2384 -0.8 -4.9 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_2526 -0.8 -6.4 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf1N1B4_1691 -0.8 -1.2 hypothetical protein compare
Pf1N1B4_4715 -0.8 -1.8 Transcriptional regulator compare
Pf1N1B4_1328 -0.8 -1.6 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf1N1B4_1636 -0.8 -1.2 FIG00954739: hypothetical protein compare
Pf1N1B4_2489 -0.8 -2.3 Biotin synthesis protein BioH compare
Pf1N1B4_962 -0.8 -5.4 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf1N1B4_128 -0.8 -1.5 Methylglyoxal reductase, acetol producing (EC 1.1.1.-) / 2,5-diketo-D-gluconic acid reductase B (EC 1.1.1.274) compare
Pf1N1B4_767 -0.8 -3.2 Glycerol kinase (EC 2.7.1.30) compare
Pf1N1B4_1891 -0.8 -2.1 ABC-type transport system involved in resistance to organic solvents, periplasmic component USSDB6C compare
Pf1N1B4_5383 -0.7 -5.4 hypothetical protein compare
Pf1N1B4_1874 -0.7 -1.8 FIG00953549: hypothetical protein compare
Pf1N1B4_2859 -0.7 -5.8 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf1N1B4_2707 -0.7 -2.8 Putative membrane protein compare
Pf1N1B4_32 -0.7 -1.8 Transcriptional regulator, TetR family compare
Pf1N1B4_1626 -0.7 -4.0 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_3906 -0.7 -1.7 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_2047 -0.7 -1.8 Chorismate--pyruvate lyase (EC 4.1.3.40) compare
Pf1N1B4_722 -0.7 -1.6 SAM-dependent methyltransferases compare
Pf1N1B4_4695 -0.7 -2.5 hypothetical protein compare
Pf1N1B4_734 -0.7 -2.3 Electron transport complex protein RnfA compare
Pf1N1B4_683 -0.7 -1.8 Fumarate hydratase class I, aerobic (EC 4.2.1.2) compare
Pf1N1B4_3446 -0.7 -1.9 Putative GTPases (G3E family) compare
Pf1N1B4_3870 -0.7 -6.1 Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion compare
Pf1N1B4_2283 -0.7 -1.4 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf1N1B4_1 -0.7 -1.6 Colicin V production protein compare
Pf1N1B4_3990 -0.7 -3.1 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf1N1B4_967 -0.7 -1.7 hypothetical protein compare
Pf1N1B4_364 -0.7 -2.5 Rhodanese domain protein UPF0176 compare
Pf1N1B4_5282 -0.7 -2.1 Phage protein compare
Pf1N1B4_4853 -0.7 -2.5 Glycosyltransferase compare
Pf1N1B4_4368 -0.7 -2.7 Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf1N1B4_980 -0.7 -1.8 hypothetical protein compare
Pf1N1B4_5307 -0.7 -2.2 hypothetical protein compare
Pf1N1B4_4334 -0.7 -2.5 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf1N1B4_5834 -0.7 -1.7 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) compare
Pf1N1B4_2486 -0.7 -1.1 hypothetical protein compare
Pf1N1B4_414 -0.7 -1.2 transcriptional regulator compare
Pf1N1B4_5013 -0.7 -2.1 Cointegrate resolution protein T compare
Pf1N1B4_1115 -0.7 -4.7 Dna binding response regulator PrrA (RegA) compare
Pf1N1B4_1430 -0.7 -2.1 Predicted signal transduction protein compare
Pf1N1B4_3874 -0.7 -3.0 Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation compare
Pf1N1B4_2879 -0.7 -3.8 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_3795 -0.7 -1.6 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Pf1N1B4_961 -0.7 -5.6 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf1N1B4_5403 -0.7 -2.6 hypothetical protein compare
Pf1N1B4_5408 -0.7 -2.8 hypothetical protein compare
Pf1N1B4_2272 -0.7 -2.6 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_5051 -0.7 -1.2 Sensor protein DegS compare
Pf1N1B4_5386 -0.7 -2.0 hypothetical protein compare
Pf1N1B4_35 -0.6 -1.9 hypothetical protein compare
Pf1N1B4_3869 -0.6 -5.2 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf1N1B4_3412 -0.6 -2.5 CTP synthase (EC 6.3.4.2) compare
Pf1N1B4_3152 -0.6 -2.8 LysR family transcriptional regulator PA3398 compare
Pf1N1B4_2131 -0.6 -1.7 hypothetical protein compare
Pf1N1B4_3819 -0.6 -2.9 Methylisocitrate lyase (EC 4.1.3.30) compare
Pf1N1B4_1057 -0.6 -1.9 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_1527 -0.6 -2.2 Queuosine Biosynthesis QueC ATPase compare
Pf1N1B4_4802 -0.6 -1.3 polysaccharide deacetylase compare
Pf1N1B4_4931 -0.6 -1.3 Glutarate-semialdehyde dehydrogenase (EC 1.2.1.20); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.79) compare
Pf1N1B4_1434 -0.6 -4.0 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_3871 -0.6 -5.3 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf1N1B4_1458 -0.6 -3.3 Probable transcription regulator Mig-14 compare
Pf1N1B4_3264 -0.6 -2.5 Methyltransferase (EC 2.1.1.-) compare
Pf1N1B4_1116 -0.6 -4.2 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf1N1B4_3445 -0.6 -2.3 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf1N1B4_4892 -0.6 -2.7 Transcriptional regulator, AraC family compare
Pf1N1B4_1863 -0.6 -4.3 Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone compare
Pf1N1B4_1317 -0.6 -1.8 Sensor histidine kinase/response regulator compare
Pf1N1B4_349 -0.6 -2.2 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) compare
Pf1N1B4_5653 -0.6 -2.8 CobN component of cobalt chelatase involved in B12 biosynthesis compare
Pf1N1B4_3936 -0.6 -1.8 Transcriptional regulator, LysR family compare
Pf1N1B4_102 -0.6 -1.7 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf1N1B4_5406 -0.6 -2.3 hypothetical protein compare
Pf1N1B4_1234 -0.6 -2.5 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_2026 -0.6 -1.5 Transcriptional regulator compare
Pf1N1B4_4777 -0.6 -1.9 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf1N1B4_688 -0.6 -1.7 FIG00955483: hypothetical protein compare
Pf1N1B4_5823 -0.6 -1.2 Na(+) H(+) antiporter subunit C compare
Pf1N1B4_2712 -0.6 -2.7 tRNA-i(6)A37 methylthiotransferase compare
Pf1N1B4_614 -0.6 -2.1 Arginine/ornithine antiporter ArcD compare
Pf1N1B4_1544 -0.6 -3.8 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_3866 -0.6 -1.4 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
Pf1N1B4_763 -0.6 -2.5 Ferric iron ABC transporter, ATP-binding protein compare
Pf1N1B4_769 -0.6 -2.9 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_3647 -0.6 -4.3 Cytochrome c heme lyase subunit CcmH compare
Pf1N1B4_2105 -0.6 -1.1 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_5293 -0.6 -2.3 hypothetical protein compare
Pf1N1B4_5014 -0.6 -1.2 Glutathione reductase (EC 1.8.1.7) compare
Pf1N1B4_5311 -0.6 -1.1 hypothetical protein compare
Pf1N1B4_3526 -0.6 -2.2 Glutathione S-transferase (EC 2.5.1.18) compare
Pf1N1B4_5652 -0.6 -1.6 ChlI component of cobalt chelatase involved in B12 biosynthesis compare
Pf1N1B4_3751 -0.6 -1.2 FIG00953060: hypothetical protein compare
Pf1N1B4_2885 -0.6 -2.9 Paraquat-inducible protein A compare
Pf1N1B4_6041 -0.6 -1.3 Carbon storage regulator compare
Pf1N1B4_3818 -0.6 -1.5 Propionate catabolism operon transcriptional regulator of GntR family [predicted] compare
Pf1N1B4_5829 -0.6 -1.4 FIG005107: hypothetical protein compare
Pf1N1B4_4872 -0.6 -1.9 Short-chain dehydrogenase/reductase SDR compare
Pf1N1B4_3670 -0.6 -2.2 probable glucosyl transferase compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N1B4 in temperature experiments