Experiment set5IT015 for Methanococcus maripaludis S2

Compare to:

Formate McCas no stress control 1

200 most detrimental genes:

  gene name fitness t score description  
MMP_RS07820 +1.0 4.2 UPF0104 family protein compare
MMP_RS01370 +0.8 5.8 acetate--CoA ligase family protein compare
MMP_RS01525 +0.6 2.1 nucleoside-diphosphate kinase compare
MMP_RS08595 +0.6 1.3 flagellar protein C compare
MMP_RS01650 +0.6 1.3 sulfurtransferase TusA family protein compare
MMP_RS04520 +0.6 2.0 nucleoside deaminase compare
MMP_RS05355 +0.6 1.0 hypothetical protein compare
MMP_RS00945 +0.5 1.3 PadR family transcriptional regulator compare
MMP_RS07125 +0.5 3.0 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS03910 +0.5 1.4 hypothetical protein compare
MMP_RS05535 +0.5 2.4 hypothetical protein compare
MMP_RS08315 +0.5 1.7 S-methyl-5-thioribose-1-phosphate isomerase compare
MMP_RS07330 +0.5 4.4 membrane protein compare
MMP_RS01775 +0.5 1.6 TIGR00297 family protein compare
MMP_RS06535 +0.5 2.4 2-oxoacid:acceptor oxidoreductase family protein compare
MMP_RS00450 +0.5 0.7 4Fe-4S binding protein compare
MMP_RS00530 +0.5 4.2 tRNA pseudouridine(54/55) synthase Pus10 compare
MMP_RS06155 +0.5 1.7 DUF4186 domain-containing protein compare
MMP_RS07115 +0.5 3.5 MBL fold metallo-hydrolase compare
MMP_RS08580 +0.5 1.2 flagellin compare
MMP_RS08775 +0.4 2.6 methanogenesis marker 9 domain-containing protein compare
MMP_RS07860 +0.4 0.6 hypothetical protein compare
MMP_RS08705 +0.4 2.9 sulfopyruvate decarboxylase subunit beta compare
MMP_RS00825 +0.4 1.7 fumarylacetoacetate hydrolase family protein compare
MMP_RS09035 +0.4 1.7 hypothetical protein compare
MMP_RS00130 +0.4 0.8 nickel-responsive transcriptional regulator NikR compare
MMP_RS01110 +0.4 1.5 FmdE family protein compare
MMP_RS04985 +0.4 1.4 DUF2180 family protein compare
MMP_RS07120 +0.4 2.8 coenzyme F420 hydrogenase subunit alpha compare
MMP_RS02310 +0.4 1.1 RimK-like ATPgrasp N-terminal domain-containing protein compare
MMP_RS08275 +0.4 3.2 hypothetical protein compare
MMP_RS03890 +0.4 2.0 DUF2540 domain-containing protein compare
MMP_RS04035 +0.3 1.0 hypothetical protein compare
MMP_RS08310 +0.3 1.3 TMEM165/GDT1 family protein compare
MMP_RS00635 +0.3 2.3 energy-coupling factor transporter transmembrane protein EcfT compare
MMP_RS07095 +0.3 1.1 PspC domain-containing protein compare
MMP_RS07345 +0.3 1.8 glycine synthesis protein GlyXL (from data) compare
MMP_RS02495 +0.3 1.3 hypothetical protein compare
MMP_RS07130 +0.3 2.4 coenzyme F420 hydrogenase subunit gamma compare
MMP_RS05635 +0.3 2.3 NAD-dependent epimerase/dehydratase family protein compare
MMP_RS03215 +0.3 2.6 MBL fold metallo-hydrolase compare
MMP_RS00930 +0.3 1.7 ABC transporter permease compare
MMP_RS08660 +0.3 2.2 DHH family phosphoesterase compare
MMP_RS06495 +0.3 0.8 YkgJ family cysteine cluster protein compare
MMP_RS03465 +0.3 0.7 adenine phosphoribosyltransferase compare
MMP_RS02770 +0.3 1.2 hypothetical protein compare
MMP_RS06575 +0.3 1.9 fluoride efflux transporter CrcB compare
MMP_RS03320 +0.3 1.4 metal-dependent transcriptional regulator compare
MMP_RS07135 +0.3 1.8 coenzyme F420 hydrogenase subunit beta compare
MMP_RS06555 +0.3 1.5 cupin domain-containing protein compare
MMP_RS07150 +0.3 1.9 MTH895/ArsE family thioredoxin-like protein compare
MMP_RS06290 +0.3 1.4 DNA repair and recombination protein RadA compare
MMP_RS01270 +0.3 2.5 prepilin peptidase compare
MMP_RS00335 +0.3 1.8 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMP_RS06745 +0.3 1.9 DUF2119 domain-containing protein compare
MMP_RS04740 +0.3 1.4 DUF473 domain-containing protein compare
MMP_RS02790 +0.3 0.6 class III signal peptide-containing protein compare
MMP_RS05940 +0.3 1.9 corrinoid protein compare
MMP_RS06610 +0.3 0.9 DUF2334 domain-containing protein compare
MMP_RS02290 +0.3 1.8 MBL fold metallo-hydrolase compare
MMP_RS02815 +0.3 1.2 hypothetical protein compare
MMP_RS07890 +0.3 0.8 OB-fold nucleic acid binding domain-containing protein compare
MMP_RS07355 +0.3 0.5 transcription factor S compare
MMP_RS03390 +0.3 1.7 malate dehydrogenase compare
MMP_RS02475 +0.3 0.8 hypothetical protein compare
MMP_RS01865 +0.3 0.7 GPR1/FUN34/YaaH family transporter compare
MMP_RS05170 +0.2 1.6 lysine exporter LysO family protein compare
MMP_RS06530 +0.2 1.5 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator compare
MMP_RS08855 +0.2 1.7 hypothetical protein compare
MMP_RS03150 +0.2 1.9 phosphoglycerate mutase compare
MMP_RS08455 +0.2 1.2 multiprotein bridging factor aMBF1 compare
MMP_RS06445 +0.2 1.8 DUF89 domain-containing protein compare
MMP_RS05365 +0.2 1.0 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
MMP_RS01185 +0.2 1.6 hypothetical protein compare
MMP_RS01675 +0.2 0.7 hypothetical protein compare
MMP_RS05180 +0.2 1.7 Nre family DNA repair protein compare
MMP_RS08350 +0.2 0.4 hypothetical protein compare
MMP_RS08930 +0.2 0.8 hypothetical protein compare
MMP_RS05580 +0.2 2.0 glycosyltransferase compare
MMP_RS05900 +0.2 1.8 tetratricopeptide repeat protein compare
MMP_RS02480 +0.2 0.8 hypothetical protein compare
MMP_RS01075 +0.2 0.5 hypothetical protein compare
MMP_RS01165 +0.2 1.5 DUF434 domain-containing protein compare
MMP_RS03585 +0.2 0.8 Hsp20/alpha crystallin family protein compare
MMP_RS04730 +0.2 1.8 flavodoxin family protein compare
MMP_RS06550 +0.2 1.2 AMP-binding protein compare
MMP_RS00325 +0.2 0.5 RNA-binding protein compare
MMP_RS01305 +0.2 2.0 hypothetical protein compare
MMP_RS00140 +0.2 1.4 DUF192 domain-containing protein compare
MMP_RS03870 +0.2 1.4 purine NTPase compare
MMP_RS02835 +0.2 1.2 CGGC domain-containing protein compare
MMP_RS02455 +0.2 1.3 hypothetical protein compare
MMP_RS04105 +0.2 1.1 MarR family transcriptional regulator compare
MMP_RS06900 +0.2 0.6 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS06480 +0.2 1.5 ABC transporter substrate-binding protein compare
MMP_RS07805 +0.2 1.4 ABC transporter permease compare
MMP_RS06545 +0.2 1.0 ferredoxin family protein compare
MMP_RS01260 +0.2 1.3 HDIG domain-containing protein compare
MMP_RS05985 +0.2 1.0 hypothetical protein compare
MMP_RS01435 +0.2 1.1 DMT family transporter compare
MMP_RS05295 +0.2 1.5 minichromosome maintenance protein MCM compare
MMP_RS05970 +0.2 1.0 class II SORL domain-containing protein compare
MMP_RS01290 +0.2 1.6 class III signal peptide-containing protein compare
MMP_RS06165 +0.2 1.4 ABC transporter permease compare
MMP_RS08860 +0.2 1.3 MinD/ParA family protein compare
MMP_RS06970 +0.2 1.2 ribosomal protein S18-alanine N-acetyltransferase compare
MMP_RS05865 +0.2 1.1 hypothetical protein compare
MMP_RS01200 +0.2 0.8 hypothetical protein compare
MMP_RS08625 +0.2 1.3 type II/IV secretion system ATPase subunit compare
MMP_RS05660 +0.2 1.1 phosphate ABC transporter substrate-binding protein compare
MMP_RS08835 +0.2 1.3 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein compare
MMP_RS08155 +0.2 1.2 hypothetical protein compare
MMP_RS04250 +0.2 1.3 PC4/YdbC family ssDNA-binding protein compare
MMP_RS04790 +0.2 1.4 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS08555 +0.2 0.8 hypothetical protein compare
MMP_RS00055 +0.2 1.3 DUF2254 domain-containing protein compare
MMP_RS00800 +0.2 1.3 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS07415 +0.2 1.0 molybdopterin-guanine dinucleotide biosynthesis protein MobB compare
MMP_RS07925 +0.2 0.8 haloacid dehalogenase compare
MMP_RS07900 +0.2 0.5 YeeE/YedE family protein compare
MMP_RS07590 +0.2 1.4 hypothetical protein compare
MMP_RS04445 +0.2 1.1 P-II family nitrogen regulator compare
MMP_RS06035 +0.2 1.1 glycosyltransferase family 2 protein compare
MMP_RS06770 +0.2 1.1 DHH family phosphoesterase compare
MMP_RS08605 +0.2 1.0 flagellar protein E compare
MMP_RS05675 +0.2 0.6 phosphate ABC transporter ATP-binding protein PstB compare
MMP_RS01310 +0.2 1.4 hypothetical protein compare
MMP_RS02325 +0.2 1.1 epoxyqueuosine reductase compare
MMP_RS08500 +0.2 0.8 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT compare
MMP_RS06185 +0.2 0.9 thermonuclease family protein compare
MMP_RS02725 +0.2 1.0 molybdate ABC transporter permease subunit compare
MMP_RS01630 +0.2 1.0 N-glycosylase/DNA lyase compare
MMP_RS07855 +0.2 1.2 class I SAM-dependent methyltransferase compare
MMP_RS01140 +0.2 0.8 molybdate ABC transporter permease subunit compare
MMP_RS02110 +0.1 0.6 hypothetical protein compare
MMP_RS01315 +0.1 1.4 DUF2341 domain-containing protein compare
MMP_RS03790 +0.1 1.1 hypothetical protein compare
MMP_RS06325 +0.1 0.4 hypothetical protein compare
MMP_RS02970 +0.1 1.1 hypothetical protein compare
MMP_RS08620 +0.1 1.1 flagellar accessory protein FlaH compare
MMP_RS07835 +0.1 0.8 TldD/PmbA family protein compare
MMP_RS05960 +0.1 1.2 CoB--CoM heterodisulfide reductase subunit B compare
MMP_RS03245 +0.1 0.8 DNA repair and recombination protein RadB compare
MMP_RS08980 +0.1 0.8 hypothetical protein compare
MMP_RS06435 +0.1 1.0 CBS domain-containing protein compare
MMP_RS05695 +0.1 1.1 phospholipase D-like domain-containing protein compare
MMP_RS07185 +0.1 1.1 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS03395 +0.1 0.8 hypothetical protein compare
MMP_RS03130 +0.1 1.0 hypothetical protein compare
MMP_RS04480 +0.1 1.3 lysine 2 3-aminomutase compare
MMP_RS01575 +0.1 0.9 aldolase compare
MMP_RS05665 +0.1 0.8 phosphate ABC transporter permease subunit PstC compare
MMP_RS07335 +0.1 0.9 tRNA (cytidine(56)-2'-O)-methyltransferase compare
MMP_RS04195 +0.1 0.8 flavodoxin compare
MMP_RS08750 +0.1 0.7 hypothetical protein compare
MMP_RS06060 +0.1 0.8 hypothetical protein compare
MMP_RS01785 +0.1 0.9 hypothetical protein compare
MMP_RS06875 +0.1 0.9 FAD-dependent oxidoreductase compare
MMP_RS02410 +0.1 0.6 ABC transporter substrate-binding protein compare
MMP_RS08475 +0.1 1.1 ABC transporter permease compare
MMP_RS00660 +0.1 1.2 alkaline phosphatase family protein compare
MMP_RS02675 +0.1 0.6 hypothetical protein compare
MMP_RS06765 +0.1 0.7 flap endonuclease-1 compare
MMP_RS02365 +0.1 1.0 nitrogen fixation compare
MMP_RS08405 +0.1 1.1 MFS transporter compare
MMP_RS01300 +0.1 1.2 hypothetical protein compare
MMP_RS00565 +0.1 0.6 CBS domain-containing protein compare
MMP_RS05530 +0.1 1.1 signal peptide peptidase SppA compare
MMP_RS08485 +0.1 1.0 tungstate ABC transporter substrate-binding protein WtpA compare
MMP_RS02915 +0.1 0.6 amino acid ABC transporter permease compare
MMP_RS03115 +0.1 1.1 hypothetical protein compare
MMP_RS05715 +0.1 0.7 hypothetical protein compare
MMP_RS03820 +0.1 0.7 EamA family transporter compare
MMP_RS00385 +0.1 1.0 P-II family nitrogen regulator compare
MMP_RS07915 +0.1 0.6 DUF4870 domain-containing protein compare
MMP_RS02085 +0.1 0.9 inosine/xanthosine triphosphatase compare
MMP_RS06665 +0.1 1.0 glycogen/starch synthase compare
MMP_RS00690 +0.1 0.9 MBL fold metallo-hydrolase compare
MMP_RS09030 +0.1 0.9 hypothetical protein compare
MMP_RS00545 +0.1 0.9 XRE family transcriptional regulator compare
MMP_RS01580 +0.1 0.9 PQQ-binding-like beta-propeller repeat protein compare
MMP_RS01160 +0.1 0.9 DMT family transporter compare
MMP_RS02255 +0.1 0.8 hypothetical protein compare
MMP_RS02565 +0.1 1.0 hypothetical protein compare
MMP_RS00705 +0.1 0.5 hypothetical protein compare
MMP_RS08245 +0.1 0.8 DUF4013 domain-containing protein compare
MMP_RS05615 +0.1 1.1 radical SAM protein compare
MMP_RS00795 +0.1 0.7 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS02685 +0.1 0.8 molybdate ABC transporter substrate-binding protein compare
MMP_RS08945 +0.1 1.0 hypothetical protein compare
MMP_RS06600 +0.1 0.3 class III signal peptide-containing protein compare
MMP_RS02750 +0.1 0.9 HAD-IC family P-type ATPase compare
MMP_RS00395 +0.1 0.4 MGMT family protein compare
MMP_RS03460 +0.1 0.9 U32 family peptidase compare
MMP_RS00240 +0.1 1.0 type II secretion system F family protein compare
MMP_RS06540 +0.1 0.4 3-methyl-2-oxobutanoate dehydrogenase subunit VorB compare
MMP_RS07875 +0.1 0.6 hypothetical protein compare
MMP_RS06655 +0.1 0.9 glycoside hydrolase family 15 protein compare
MMP_RS03405 +0.1 0.6 RNA 3'-terminal phosphate cyclase compare
MMP_RS04150 +0.1 0.8 MFS transporter compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in stress experiments