Experiment set5IT015 for Pantoea sp. MT58

Compare to:

Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_08085 -4.5 -3.1 helix-turn-helix domain-containing protein compare
IAI47_05420 -3.7 -1.7 PTS glucose transporter subunit IIA compare
IAI47_09235 -3.2 -2.0 type I DNA topoisomerase compare
IAI47_17120 -3.2 -4.0 BolA family iron metabolism protein IbaG compare
IAI47_21880 -3.1 -0.8 ParA family protein compare
IAI47_09580 -3.0 -4.4 FNR family transcription factor compare
IAI47_15595 -3.0 -2.1 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
IAI47_02350 -2.8 -1.3 tRNA-Thr compare
IAI47_04300 -2.6 -7.8 recombinase RecA compare
IAI47_05070 -2.6 -0.7 outer membrane protein assembly factor BamB compare
IAI47_00870 -2.5 -1.0 50S ribosomal protein L31 compare
IAI47_12570 -2.5 -1.2 tRNA-Ser compare
IAI47_15485 -2.5 -1.1 molecular chaperone Skp compare
IAI47_10835 -2.4 -1.4 tRNA-Val compare
IAI47_07525 -2.4 -2.9 conjugal transfer protein TraD compare
IAI47_10545 -2.4 -3.7 hypothetical protein compare
IAI47_04800 -2.4 -0.9 RnfH family protein compare
IAI47_16995 -2.4 -2.1 protein YrbN compare
IAI47_08445 -2.3 -1.3 Holliday junction branch migration protein RuvA compare
IAI47_13690 -2.2 -0.6 cell envelope integrity protein TolA compare
IAI47_15605 -2.2 -2.2 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
IAI47_16390 -2.2 -1.0 tRNA-Leu compare
IAI47_15970 -2.1 -2.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
IAI47_12885 -2.0 -7.9 pyruvate formate lyase 1-activating protein compare
IAI47_12880 -2.0 -13.4 formate C-acetyltransferase compare
IAI47_06380 -2.0 -2.6 NADH-quinone oxidoreductase subunit NuoF compare
IAI47_11475 -2.0 -1.3 hypothetical protein compare
IAI47_07470 -1.9 -2.6 AlpA family transcriptional regulator compare
IAI47_00780 -1.9 -3.6 6-phosphofructokinase compare
IAI47_01780 -1.8 -2.6 Fe-S biogenesis protein NfuA compare
IAI47_07165 -1.8 -2.4 exodeoxyribonuclease I compare
IAI47_18400 -1.8 -2.4 tyrosine recombinase XerC compare
IAI47_05425 -1.8 -4.0 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_13925 -1.7 -1.1 tRNA-Met compare
IAI47_18830 -1.7 -0.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_14075 -1.7 -2.6 transcription antiterminator/RNA stability regulator CspE compare
IAI47_05195 -1.7 -1.9 DnaA inactivator Hda compare
IAI47_06245 -1.7 -3.4 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_13685 -1.7 -2.3 Tol-Pal system protein TolB compare
IAI47_09055 -1.7 -9.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_06325 -1.6 -5.5 acetate kinase compare
IAI47_06455 -1.6 -4.6 ribonucleoside-diphosphate reductase subunit alpha compare
IAI47_00760 -1.6 -3.7 envelope stress response regulator transcription factor CpxR compare
IAI47_04400 -1.6 -4.9 3-deoxy-7-phosphoheptulonate synthase compare
IAI47_18530 -1.6 -2.6 thioredoxin TrxA compare
IAI47_06320 -1.5 -5.8 phosphate acetyltransferase compare
IAI47_03375 -1.5 -7.1 peptide chain release factor 3 compare
IAI47_06565 -1.5 -2.1 YejL family protein compare
IAI47_15110 -1.5 -4.0 chromophore lyase compare
IAI47_11450 -1.5 -4.2 ankyrin repeat domain-containing protein compare
IAI47_15635 -1.5 -2.4 RNA polymerase-binding protein DksA compare
IAI47_00735 -1.4 -1.5 protein-export chaperone SecB compare
IAI47_21450 -1.4 -1.2 general stress protein compare
IAI47_05630 -1.4 -2.2 hypothetical protein compare
IAI47_12645 -1.4 -3.4 porin OmpA compare
IAI47_21035 -1.4 -3.8 TetR/AcrR family transcriptional regulator compare
IAI47_13745 -1.4 -2.7 2-oxoglutarate dehydrogenase E1 component compare
IAI47_04835 -1.4 -6.3 ATP-dependent RNA helicase SrmB compare
IAI47_12370 -1.4 -1.5 acyl carrier protein compare
IAI47_13545 -1.4 -6.9 6-phosphogluconolactonase compare
IAI47_04870 -1.3 -4.5 elongation factor 4 compare
IAI47_17965 -1.3 -6.9 glucose-6-phosphate isomerase compare
IAI47_04425 -1.3 -6.6 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
IAI47_07250 -1.3 -1.9 tRNA-Asn compare
IAI47_16990 -1.3 -3.1 DEAD/DEAH family ATP-dependent RNA helicase compare
IAI47_06655 -1.3 -3.5 1-phosphofructokinase compare
IAI47_10840 -1.2 -3.2 pyruvate kinase PykF compare
IAI47_14930 -1.2 -2.6 shikimate kinase AroL compare
IAI47_01365 -1.2 -1.5 inorganic phosphate transporter PitA compare
IAI47_10775 -1.2 -3.2 ribonuclease T compare
IAI47_17005 -1.2 -5.0 polyribonucleotide nucleotidyltransferase compare
IAI47_20995 -1.2 -1.9 hypothetical protein compare
IAI47_09040 -1.2 -1.3 NAD-dependent epimerase compare
IAI47_13840 -1.2 -2.4 replication initiation negative regulator SeqA compare
IAI47_10755 -1.2 -1.2 DUF1289 domain-containing protein compare
IAI47_13885 -1.2 -1.2 N-acetylglucosamine-6-phosphate deacetylase compare
IAI47_06415 -1.2 -3.8 NADH-quinone oxidoreductase subunit M compare
IAI47_06365 -1.2 -3.1 NADH-quinone oxidoreductase subunit B compare
IAI47_03820 -1.1 -3.2 site-specific tyrosine recombinase XerD compare
IAI47_11500 -1.1 -1.9 type VI secretion system tip protein VgrG compare
IAI47_17075 -1.1 -3.5 ribosome assembly RNA-binding protein YhbY compare
IAI47_19690 -1.1 -0.8 hypothetical protein compare
IAI47_03235 -1.1 -4.0 tol-pal system-associated acyl-CoA thioesterase compare
IAI47_06450 -1.1 -3.4 ribonucleotide-diphosphate reductase subunit beta compare
IAI47_02090 -1.1 -2.6 elongation factor Tu compare
IAI47_10925 -1.1 -2.4 EAL domain-containing protein compare
IAI47_21765 -1.1 -1.6 YoeB-YefM toxin-antitoxin system antitoxin YefM compare
IAI47_18840 -1.1 -1.5 membrane protein insertion efficiency factor YidD compare
IAI47_14470 -1.1 -1.8 YbaB/EbfC family nucleoid-associated protein compare
IAI47_15600 -1.1 -1.1 Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD compare
IAI47_11515 -1.0 -1.2 hypothetical protein compare
IAI47_00430 -1.0 -7.0 DNA polymerase I compare
IAI47_09210 -1.0 -4.5 23S rRNA pseudouridine(2605) synthase RluB compare
IAI47_17185 -1.0 -4.3 RNA polymerase factor sigma-54 compare
IAI47_11550 -1.0 -1.9 hypothetical protein compare
IAI47_10520 -1.0 -1.8 pyridoxamine 5'-phosphate oxidase compare
IAI47_04895 -1.0 -1.7 pyridoxine 5'-phosphate synthase compare
IAI47_03680 -1.0 -5.7 transketolase compare
IAI47_07885 -1.0 -1.0 tRNA-Asn compare
IAI47_20130 -1.0 -3.6 nuclear transport factor 2 family protein compare
IAI47_01875 -1.0 -2.3 hypothetical protein compare
IAI47_06420 -1.0 -3.0 NADH-quinone oxidoreductase subunit NuoN compare
IAI47_00465 -1.0 -0.7 ribosome-dependent GTPase TypA compare
IAI47_16195 -1.0 -5.1 transaldolase compare
IAI47_06475 -1.0 -3.0 transcriptional regulator RcsB compare
IAI47_16135 -1.0 -3.9 FKBP-type peptidyl-prolyl cis-trans isomerase compare
IAI47_08110 -1.0 -3.3 anti-adapter protein IraP compare
IAI47_04750 -1.0 -1.7 hypothetical protein compare
IAI47_00655 -1.0 -2.4 glycosyltransferase family 4 protein compare
IAI47_16095 -1.0 -2.2 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
IAI47_11760 -0.9 -0.8 TonB-dependent siderophore receptor compare
IAI47_16925 -0.9 -6.1 anaerobic ribonucleoside-triphosphate reductase compare
IAI47_17215 -0.9 -0.7 aerobic respiration two-component sensor histidine kinase ArcB compare
IAI47_11420 -0.9 -1.8 hypothetical protein compare
IAI47_21390 -0.9 -3.4 hypothetical protein compare
IAI47_06900 -0.9 -1.5 phosphatase PAP2 family protein compare
IAI47_19825 -0.9 -4.4 EAL domain-containing protein compare
IAI47_21305 -0.9 -2.4 AzlC family ABC transporter permease compare
IAI47_16930 -0.9 -3.2 anaerobic ribonucleoside-triphosphate reductase-activating protein compare
IAI47_06595 -0.9 -2.1 hypothetical protein compare
IAI47_21235 -0.9 -1.2 hypothetical protein compare
IAI47_05830 -0.9 -1.2 hypothetical protein compare
IAI47_18420 -0.8 -5.2 class I adenylate cyclase compare
IAI47_18985 -0.8 -2.2 MarR family transcriptional regulator compare
IAI47_13850 -0.8 -1.8 LexA regulated protein compare
IAI47_12865 -0.8 -4.5 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_00515 -0.8 -1.0 DNA-directed RNA polymerase subunit omega compare
IAI47_15645 -0.8 -3.6 polynucleotide adenylyltransferase PcnB compare
IAI47_05745 -0.8 -1.0 protease FtsH-inhibitory lysogeny factor CIII compare
IAI47_20700 -0.8 -2.0 thiazole synthase compare
IAI47_09300 -0.8 -3.3 crotonase/enoyl-CoA hydratase family protein compare
IAI47_02725 -0.8 -2.5 gamma-glutamylcyclotransferase compare
IAI47_14555 -0.8 -1.7 hemolysin expression modulator Hha compare
IAI47_20650 -0.8 -2.5 polyprenyl synthetase family protein compare
IAI47_13310 -0.8 -2.6 MerR family transcriptional regulator compare
IAI47_03135 -0.8 -2.9 outer membrane channel protein TolC compare
IAI47_13050 -0.8 -1.5 YbjN domain-containing protein compare
IAI47_06405 -0.8 -1.4 NADH-quinone oxidoreductase subunit NuoK compare
IAI47_14160 -0.7 -2.6 DUF4186 domain-containing protein compare
IAI47_08135 -0.7 -4.1 flagellar export chaperone FliS compare
IAI47_04775 -0.7 -1.5 SIR2 family protein compare
IAI47_09635 -0.7 -1.7 hypothetical protein compare
IAI47_06410 -0.7 -2.3 NADH-quinone oxidoreductase subunit L compare
IAI47_21675 -0.7 -2.2 helix-turn-helix domain-containing protein compare
IAI47_12435 -0.7 -2.0 hypothetical protein compare
IAI47_17080 -0.7 -3.2 transcription elongation factor GreA compare
IAI47_13475 -0.7 -1.6 molybdopterin synthase catalytic subunit MoaE compare
IAI47_06395 -0.7 -0.6 NADH-quinone oxidoreductase subunit NuoI compare
IAI47_16080 -0.7 -2.8 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_08410 -0.7 -2.6 carboxy-S-adenosyl-L-methionine synthase CmoA compare
IAI47_11655 -0.7 -1.2 hypothetical protein compare
IAI47_16190 -0.7 -2.6 molybdopterin adenylyltransferase compare
IAI47_17035 -0.7 -1.3 ribosome maturation factor RimP compare
IAI47_07515 -0.7 -1.8 hypothetical protein compare
IAI47_02495 -0.7 -1.7 hypothetical protein compare
IAI47_08035 -0.7 -1.2 flagellar hook-basal body complex protein FliE compare
IAI47_14465 -0.7 -2.3 recombination protein RecR compare
IAI47_02040 -0.7 -2.7 peptidylprolyl isomerase compare
IAI47_05435 -0.7 -1.9 hypothetical protein compare
IAI47_00540 -0.7 -1.0 hypothetical protein compare
IAI47_09440 -0.7 -3.8 transcriptional regulator TyrR compare
IAI47_06965 -0.7 -0.8 glycosyltransferase family 2 protein compare
IAI47_16405 -0.7 -2.4 siderophore-iron reductase FhuF compare
IAI47_18415 -0.7 -1.6 lipoprotein compare
IAI47_03805 -0.7 -2.5 FAD assembly factor SdhE compare
IAI47_10800 -0.7 -2.6 LysR family transcriptional regulator compare
IAI47_14680 -0.7 -3.1 cytochrome o ubiquinol oxidase subunit II compare
IAI47_09480 -0.7 -1.6 hypothetical protein compare
IAI47_08855 -0.7 -2.8 septum site-determining protein MinC compare
IAI47_14815 -0.7 -2.6 DUF479 domain-containing protein compare
IAI47_07055 -0.7 -2.5 YbaK/prolyl-tRNA synthetase associated domain-containing protein compare
IAI47_03970 -0.7 -3.4 exodeoxyribonuclease V subunit alpha compare
IAI47_10790 -0.7 -1.6 YnhF family membrane protein compare
IAI47_09230 -0.7 -2.1 YciN family protein compare
IAI47_15425 -0.7 -2.6 Rho-binding antiterminator compare
IAI47_04950 -0.7 -3.0 nitrogen regulatory protein P-II compare
IAI47_11625 -0.6 -1.4 DUF1311 domain-containing protein compare
IAI47_01005 -0.6 -4.3 DUF413 domain-containing protein compare
IAI47_09855 -0.6 -1.7 DUF2384 domain-containing protein compare
IAI47_17020 -0.6 -1.2 30S ribosome-binding factor RbfA compare
IAI47_09670 -0.6 -2.5 DksA/TraR family C4-type zinc finger protein compare
IAI47_06135 -0.6 -1.5 phosphohistidine phosphatase SixA compare
IAI47_16430 -0.6 -1.6 histidine phosphatase family protein compare
IAI47_07380 -0.6 -1.8 ABC transporter ATP-binding protein compare
IAI47_14775 -0.6 -1.1 transcriptional regulator NrdR compare
IAI47_07360 -0.6 -1.4 hypothetical protein compare
IAI47_19940 -0.6 -1.5 hypothetical protein compare
IAI47_19050 -0.6 -0.9 hypothetical protein compare
IAI47_06240 -0.6 -2.5 aspartate-semialdehyde dehydrogenase compare
IAI47_02265 -0.6 -3.2 alternative ribosome-rescue factor A compare
IAI47_11700 -0.6 -2.0 SH3 domain-containing protein compare
IAI47_09395 -0.6 -1.3 phage shock protein PspA compare
IAI47_07135 -0.6 -2.5 DeoR/GlpR transcriptional regulator compare
IAI47_14490 -0.6 -1.6 primosomal replication protein compare
IAI47_11535 -0.6 -0.9 DcrB-related protein compare
IAI47_10270 -0.6 -2.4 benzoate/H(+) symporter BenE family transporter compare
IAI47_06790 -0.6 -2.5 alkyl hydroperoxide reductase subunit C compare
IAI47_00805 -0.6 -2.8 DUF805 domain-containing protein compare
IAI47_09150 -0.6 -2.4 YkgJ family cysteine cluster protein compare
IAI47_10550 -0.6 -1.6 two-component-system connector protein YcgZ compare


Specific Phenotypes

None in this experiment

For Pantoea sp. MT58 in survival experiments

For survival Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 across organisms