Experiment set5IT014 for Pseudomonas fluorescens FW300-N2E3

Compare to:

D-Glucosamine Hydrochloride carbon source

200 most important genes:

  gene name fitness t score description  
AO353_20625 -4.9 -3.4 3-isopropylmalate dehydratase compare
AO353_20695 -4.8 -6.6 O-succinylhomoserine sulfhydrylase compare
AO353_12085 -4.7 -8.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_05115 -4.7 -11.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_20665 -4.4 -11.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_20620 -4.4 -8.4 isopropylmalate isomerase compare
AO353_12070 -4.4 -9.8 imidazoleglycerol-phosphate dehydratase compare
AO353_13165 -4.4 -6.0 ATP phosphoribosyltransferase regulatory subunit compare
AO353_01375 -4.2 -10.1 phosphate acyltransferase compare
AO353_12520 -4.0 -13.8 glutamate synthase compare
AO353_20635 -4.0 -14.6 3-isopropylmalate dehydrogenase compare
AO353_14505 -4.0 -14.1 ketol-acid reductoisomerase compare
AO353_08185 -4.0 -11.7 methionine biosynthesis protein MetW compare
AO353_12090 -4.0 -2.7 imidazole glycerol phosphate synthase subunit HisF compare
AO353_12515 -3.9 -23.7 glutamate synthase compare
AO353_07230 -3.8 -19.0 anthranilate synthase compare
AO353_12075 -3.8 -10.0 imidazole glycerol phosphate synthase subunit HisH compare
AO353_12500 -3.8 -2.6 shikimate kinase compare
AO353_10710 -3.7 -5.7 tryptophan synthase subunit beta compare
AO353_08180 -3.7 -15.4 homoserine O-acetyltransferase compare
AO353_08345 -3.7 -10.9 dihydroxy-acid dehydratase compare
AO353_04455 -3.7 -8.5 Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) (from data) conserved
AO353_07215 -3.6 -9.3 anthranilate phosphoribosyltransferase compare
AO353_03415 -3.6 -8.3 glucokinase compare
AO353_20540 -3.6 -9.2 aromatic amino acid aminotransferase compare
AO353_02075 -3.6 -13.5 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_13070 -3.6 -10.2 phosphoserine phosphatase compare
AO353_14500 -3.5 -8.2 acetolactate synthase 3 regulatory subunit compare
AO353_08685 -3.5 -9.2 N-acetylglutamate synthase compare
AO353_05110 -3.4 -13.2 histidinol dehydrogenase compare
AO353_20175 -3.3 -3.9 ATP-dependent Clp protease proteolytic subunit compare
AO353_07210 -3.3 -6.8 indole-3-glycerol-phosphate synthase compare
AO353_10025 -3.3 -17.7 pyruvate carboxylase subunit B compare
AO353_14370 -3.3 -9.1 glucose-6-phosphate isomerase compare
AO353_14495 -3.2 -13.6 acetolactate synthase 3 catalytic subunit compare
AO353_10030 -3.1 -14.1 pyruvate carboxylase subunit A compare
AO353_04155 -3.1 -14.1 ornithine carbamoyltransferase compare
AO353_09240 -3.0 -3.0 acetylglutamate kinase compare
AO353_12365 -3.0 -4.2 phosphoribosyl-AMP cyclohydrolase compare
AO353_00495 -3.0 -3.6 DNA topoisomerase I compare
AO353_07155 -3.0 -8.4 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_09000 -3.0 -6.8 argininosuccinate lyase compare
AO353_04105 -2.9 -10.1 argininosuccinate synthase compare
AO353_08510 -2.9 -7.2 3-phosphoglycerate dehydrogenase compare
AO353_08015 -2.9 -9.7 5,10-methylenetetrahydrofolate reductase compare
AO353_03360 -2.9 -10.4 glucose-6-phosphate dehydrogenase compare
AO353_12115 -2.9 -3.9 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_05080 -2.8 -13.7 sulfate adenylyltransferase compare
AO353_15925 -2.8 -11.3 2-isopropylmalate synthase compare
AO353_08465 -2.7 -16.1 phosphoenolpyruvate-protein phosphotransferase compare
AO353_06495 -2.7 -6.5 gamma-glutamyl phosphate reductase compare
AO353_03580 -2.7 -4.4 ATP-dependent DNA helicase RuvB compare
AO353_10035 -2.7 -8.7 LysR family transcriptional regulator compare
AO353_14115 -2.6 -8.6 gamma-glutamyl kinase compare
AO353_00825 -2.6 -4.9 porin compare
AO353_07220 -2.6 -9.0 anthranilate synthase compare
AO353_22800 -2.6 -4.4 sulfite reductase compare
AO353_24130 -2.6 -4.7 hypothetical protein compare
AO353_14400 -2.5 -6.0 Fis family transcriptional regulator compare
AO353_21740 -2.4 -9.8 D-glucosaminate dehydratase (EC 4.3.1.9) (from data) conserved
AO353_08265 -2.4 -7.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_00105 -2.3 -2.3 hypothetical protein compare
AO353_10670 -2.3 -7.2 shikimate dehydrogenase compare
AO353_05075 -2.2 -11.6 adenylylsulfate kinase compare
AO353_15295 -2.2 -8.6 division/cell wall cluster transcriptional repressor MraZ compare
AO353_21715 -2.2 -9.8 ABC transporter for D-glucosamine, permease component 1 (from data) conserved
AO353_08165 -2.1 -4.3 pyrroline-5-carboxylate reductase compare
AO353_10705 -2.1 -5.1 tryptophan synthase subunit alpha compare
AO353_01080 -2.1 -10.5 hypothetical protein compare
AO353_06040 -2.1 -4.8 exodeoxyribonuclease V subunit alpha compare
AO353_07525 -2.1 -12.6 biotin synthase compare
AO353_02250 -2.1 -4.2 chorismate synthase compare
AO353_21710 -2.1 -9.5 ABC transporter for D-glucosamine, periplasmic substrate-binding component (from data) conserved
AO353_05800 -2.0 -6.1 hypothetical protein compare
AO353_08780 -2.0 -7.6 5-formyltetrahydrofolate cyclo-ligase compare
AO353_03590 -2.0 -4.4 crossover junction endodeoxyribonuclease RuvC compare
AO353_02040 -2.0 -3.7 integration host factor subunit beta compare
AO353_04565 -2.0 -6.8 nucleoid-associated protein compare
AO353_08885 -2.0 -13.8 polyphosphate kinase compare
AO353_09040 -2.0 -2.9 diaminopimelate epimerase compare
AO353_11850 -1.9 -4.8 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_11165 -1.9 -10.1 hypothetical protein compare
AO353_07515 -1.7 -2.8 transporter compare
AO353_12105 -1.7 -6.7 peptidase S41 compare
AO353_08475 -1.7 -8.2 phosphoserine phosphatase compare
AO353_08470 -1.7 -4.4 RNA pyrophosphohydrolase compare
AO353_21720 -1.7 -9.1 ABC transporter for D-glucosamine, permease component 2 (from data) conserved
AO353_06045 -1.7 -7.2 exodeoxyribonuclease V subunit beta compare
AO353_06050 -1.7 -7.2 exodeoxyribonuclease V subunit gamma compare
AO353_14420 -1.6 -4.1 molecular chaperone DnaK compare
AO353_02710 -1.6 -10.3 (p)ppGpp synthetase compare
AO353_18705 -1.6 -3.8 anti-anti-sigma factor compare
AO353_16940 -1.6 -5.2 deoxycytidine triphosphate deaminase compare
AO353_04355 -1.5 -2.6 homoserine dehydrogenase compare
AO353_02000 -1.5 -4.1 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_10945 -1.5 -2.8 cytochrome C compare
AO353_05195 -1.5 -8.4 glmZ(sRNA)-inactivating NTPase compare
AO353_12015 -1.4 -2.7 antitoxin compare
AO353_27650 -1.3 -3.9 cell division protein FtsK compare
AO353_04220 -1.3 -3.9 chemotaxis protein CheY compare
AO353_18780 -1.3 -5.4 cobyrinic acid a,c-diamide synthase compare
AO353_21625 -1.2 -2.3 Fe/S biogenesis protein NfuA compare
AO353_01550 -1.2 -5.1 hypothetical protein compare
AO353_02070 -1.2 -4.4 prephenate dehydratase compare
AO353_07505 -1.2 -6.4 dethiobiotin synthetase compare
AO353_10430 -1.2 -2.8 chromosome partitioning protein ParB compare
AO353_08045 -1.2 -8.5 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_00650 -1.2 -2.6 cytochrome biogenesis protein compare
AO353_14775 -1.2 -4.1 hypothetical protein compare
AO353_07520 -1.1 -7.8 8-amino-7-oxononanoate synthase compare
AO353_10780 -1.1 -2.0 DNA-binding protein compare
AO353_00310 -1.1 -6.2 transaldolase compare
AO353_13140 -1.1 -4.6 tRNA dimethylallyltransferase compare
AO353_18775 -1.1 -5.1 flagellar biosynthesis protein FlhF compare
AO353_12345 -1.1 -1.9 twin-arginine protein translocation system subunit TatC compare
AO353_08880 -1.0 -2.0 exopolyphosphatase compare
AO353_16805 -1.0 -4.4 recombinase RecA compare
AO353_22340 -1.0 -4.3 GfdT protein compare
AO353_15250 -1.0 -2.9 cytochrome B compare
AO353_15480 -1.0 -1.8 hypothetical protein compare
AO353_04185 -1.0 -4.3 DeoR family transcriptional regulator compare
AO353_16605 -1.0 -6.7 protein-L-isoaspartate O-methyltransferase compare
AO353_01410 -1.0 -2.8 ribonuclease E compare
AO353_26045 -1.0 -2.0 hypothetical protein compare
AO353_02465 -1.0 -2.1 hypothetical protein compare
AO353_14405 -0.9 -6.0 ATPase compare
AO353_12360 -0.9 -4.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_07510 -0.9 -6.1 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_23495 -0.9 -1.9 SAM-dependent methyltransferase compare
AO353_09320 -0.9 -5.4 ATP-dependent DNA helicase RecG compare
AO353_04365 -0.9 -3.6 recombinase XerD compare
AO353_20095 -0.9 -3.8 histidine kinase compare
AO353_00700 -0.9 -3.7 Cro/Cl family transcriptional regulator compare
AO353_07075 -0.9 -3.8 elongation factor Tu compare
AO353_00750 -0.9 -3.3 GntR family transcriptional regulator compare
AO353_02685 -0.9 -2.1 phosphoribosylglycinamide formyltransferase compare
AO353_10445 -0.9 -1.6 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_26900 -0.9 -3.8 glycerate kinase compare
AO353_07895 -0.9 -2.1 fructose-bisphosphate aldolase compare
AO353_07255 -0.9 -6.9 polyamine ABC transporter substrate-binding protein compare
AO353_27350 -0.9 -2.5 hypothetical protein compare
AO353_11530 -0.8 -4.8 diguanylate cyclase compare
AO353_17205 -0.8 -2.1 beta-ketoadipyl CoA thiolase compare
AO353_07355 -0.8 -3.9 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_16495 -0.8 -4.0 zinc metallopeptidase RseP compare
AO353_05695 -0.8 -6.3 transcriptional regulator PdhR compare
AO353_00355 -0.8 -1.7 transcriptional regulator compare
AO353_10435 -0.8 -5.3 chromosome partitioning protein compare
AO353_21645 -0.8 -2.3 cobalt transporter compare
AO353_21330 -0.8 -4.7 RpiR family transcriptional regulator compare
AO353_08350 -0.8 -3.9 hypothetical protein compare
AO353_27425 -0.8 -2.5 transcriptional regulator compare
AO353_00515 -0.8 -2.4 hypothetical protein compare
AO353_00610 -0.8 -1.2 cytochrome C oxidase Cbb3 compare
AO353_02590 -0.8 -2.5 MarR family transcriptional regulator compare
AO353_27550 -0.8 -1.8 hypothetical protein compare
AO353_18425 -0.8 -3.0 hypothetical protein compare
AO353_03970 -0.8 -5.6 diguanylate cyclase compare
AO353_28960 -0.8 -1.0 Fis family transcriptional regulator compare
AO353_09395 -0.8 -2.6 type VI secretion protein compare
AO353_27155 -0.7 -1.5 hypothetical protein compare
AO353_10225 -0.7 -2.8 methyltransferase compare
AO353_03405 -0.7 -4.2 histidine kinase compare
AO353_27950 -0.7 -1.7 hypothetical protein compare
AO353_05065 -0.7 -3.8 phosphate acetyltransferase compare
AO353_19770 -0.7 -1.8 peptidase compare
AO353_17035 -0.7 -3.2 hypothetical protein compare
AO353_00605 -0.7 -3.8 cytochrome C oxidase Cbb3 compare
AO353_20340 -0.7 -2.6 gamma-carboxygeranoyl-CoA hydratase compare
AO353_16710 -0.7 -1.7 hypothetical protein compare
AO353_22345 -0.7 -4.4 ATPase compare
AO353_17410 -0.7 -1.0 arylsulfate sulfotransferase compare
AO353_06850 -0.7 -1.8 MFS transporter compare
AO353_03630 -0.7 -5.6 porin compare
AO353_18420 -0.7 -2.7 hypothetical protein compare
AO353_08115 -0.7 -3.7 energy transducer TonB compare
AO353_10630 -0.7 -2.8 16S rRNA methyltransferase compare
AO353_09050 -0.7 -2.5 recombinase XerC compare
AO353_02935 -0.7 -3.1 ribose-phosphate pyrophosphokinase compare
AO353_20815 -0.7 -2.1 LacI family transcriptional regulator compare
AO353_11125 -0.7 -2.7 5S ribosomal RNA compare
AO353_18540 -0.7 -1.5 pseudouridine synthase compare
AO353_03585 -0.7 -1.7 ATP-dependent DNA helicase RuvA compare
AO353_05690 -0.7 -2.0 SsrA-binding protein compare
AO353_24340 -0.7 -0.9 TetR family transcriptional regulator compare
AO353_25260 -0.7 -2.5 hypothetical protein compare
AO353_10455 -0.7 -1.2 tRNA modification GTPase MnmE compare
AO353_19640 -0.7 -3.5 chemotaxis protein CheY compare
AO353_02640 -0.7 -1.5 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO353_15725 -0.7 -2.3 hypothetical protein compare
AO353_20170 -0.7 -3.0 trigger factor compare
AO353_20970 -0.7 -2.9 hypothetical protein compare
AO353_19145 -0.7 -2.1 protease HtpX compare
AO353_24190 -0.7 -2.0 hypothetical protein compare
AO353_25110 -0.7 -4.9 porin compare
AO353_12060 -0.6 -2.6 acetyltransferase compare
AO353_22035 -0.6 -2.2 pyridoxine 5'-phosphate oxidase compare
AO353_17885 -0.6 -1.5 hypothetical protein compare
AO353_15385 -0.6 -1.6 hypothetical protein compare
AO353_01085 -0.6 -4.5 methionyl-tRNA formyltransferase compare


Specific Phenotypes

For 13 genes in this experiment

For carbon source D-Glucosamine Hydrochloride in Pseudomonas fluorescens FW300-N2E3

For carbon source D-Glucosamine Hydrochloride across organisms