Experiment set5IT014 for Pseudomonas fluorescens FW300-N1B4

Compare to:

LB 10C

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_2412 -3.5 -6.3 ATP-dependent 23S rRNA helicase DbpA compare
Pf1N1B4_1403 -3.4 -12.4 3'-to-5' exoribonuclease RNase R compare
Pf1N1B4_1307 -3.2 -4.6 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_2949 -2.5 -2.8 FIG00956396: hypothetical protein compare
Pf1N1B4_3093 -2.4 -3.0 Outer membrane protein H precursor compare
Pf1N1B4_1399 -2.3 -6.8 FIG003573: hypothetical protein compare
Pf1N1B4_3812 -2.2 -10.7 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_1458 -1.9 -6.9 Probable transcription regulator Mig-14 compare
Pf1N1B4_327 -1.9 -2.6 hypothetical protein compare
Pf1N1B4_1906 -1.8 -4.9 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_350 -1.8 -6.3 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_2526 -1.8 -12.8 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf1N1B4_1315 -1.8 -8.4 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_3779 -1.7 -3.8 Hydrolase, alpha/beta fold family functionally coupled to Phosphoribulokinase compare
Pf1N1B4_3917 -1.7 -3.3 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf1N1B4_5383 -1.7 -9.7 hypothetical protein compare
Pf1N1B4_1426 -1.7 -5.1 hypothetical protein compare
Pf1N1B4_683 -1.6 -4.7 Fumarate hydratase class I, aerobic (EC 4.2.1.2) compare
Pf1N1B4_2807 -1.6 -2.9 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf1N1B4_2209 -1.6 -6.9 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_2284 -1.6 -5.3 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf1N1B4_3168 -1.6 -4.0 AmpG permease compare
Pf1N1B4_1568 -1.5 -4.2 Twin-arginine translocation protein TatB compare
Pf1N1B4_507 -1.5 -2.0 FIG00956448: hypothetical protein compare
Pf1N1B4_5838 -1.5 -3.0 FIG00956589: hypothetical protein compare
Pf1N1B4_1091 -1.4 -5.1 FIG138315: Putative alpha helix protein compare
Pf1N1B4_3143 -1.4 -4.4 RecA protein compare
Pf1N1B4_3833 -1.4 -8.0 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_2736 -1.4 -3.3 ATP-dependent RNA helicase PA3950 compare
Pf1N1B4_3998 -1.4 -3.7 putative exported protein compare
Pf1N1B4_2856 -1.3 -3.4 Poly(A) polymerase (EC 2.7.7.19) compare
Pf1N1B4_2036 -1.3 -3.5 Phosphate transport system permease protein PstA (TC 3.A.1.7.1) compare
Pf1N1B4_501 -1.3 -2.1 Flp pilus assembly protein RcpC/CpaB compare
Pf1N1B4_1554 -1.2 -6.1 predicted FeS cluster maintenance protein (from data) compare
Pf1N1B4_1632 -1.2 -3.6 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf1N1B4_2912 -1.2 -2.1 GTP-binding and nucleic acid-binding protein YchF compare
Pf1N1B4_3906 -1.2 -3.6 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_3997 -1.2 -4.5 Uncharacterized protein YtfM precursor compare
Pf1N1B4_2037 -1.2 -3.3 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf1N1B4_5659 -1.2 -8.4 NfuA Fe-S protein maturation compare
Pf1N1B4_2401 -1.2 -2.5 Lipoprotein, putative compare
Pf1N1B4_5059 -1.2 -2.3 Transcriptional regulator, LysR family compare
Pf1N1B4_1266 -1.2 -1.9 hypothetical protein compare
Pf1N1B4_4531 -1.2 -1.8 FIG01221261: hypothetical protein compare
Pf1N1B4_2874 -1.1 -2.1 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_4051 -1.1 -3.9 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf1N1B4_4803 -1.1 -2.5 ABC-type polar amino acid transport system protein, substrate-binding protein compare
Pf1N1B4_3518 -1.1 -3.1 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_1434 -1.1 -6.2 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_733 -1.1 -2.4 Methionyl-tRNA synthetase (EC 6.1.1.10) compare
Pf1N1B4_5682 -1.0 -1.9 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf1N1B4_1456 -1.0 -6.4 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf1N1B4_4029 -1.0 -2.7 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_5668 -1.0 -2.8 Peptidase, U7 family compare
Pf1N1B4_4612 -1.0 -1.8 FIG00954117: hypothetical protein compare
Pf1N1B4_1617 -1.0 -4.0 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_5834 -1.0 -1.9 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) compare
Pf1N1B4_751 -1.0 -2.1 hypothetical protein compare
Pf1N1B4_2939 -0.9 -4.1 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf1N1B4_5575 -0.9 -2.5 hypothetical protein compare
Pf1N1B4_4001 -0.9 -1.8 Membrane fusion component of tripartite multidrug resistance system compare
Pf1N1B4_644 -0.9 -2.0 Cold shock protein CspC compare
Pf1N1B4_2891 -0.9 -3.1 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
Pf1N1B4_716 -0.9 -2.2 Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites compare
Pf1N1B4_1024 -0.9 -3.9 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf1N1B4_232 -0.9 -2.5 DNA-binding response regulator, LuxR family compare
Pf1N1B4_767 -0.9 -3.8 Glycerol kinase (EC 2.7.1.30) compare
Pf1N1B4_2035 -0.9 -3.8 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf1N1B4_4028 -0.9 -2.7 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_2005 -0.9 -1.4 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_4897 -0.8 -2.0 Transcriptional regulator, LysR family compare
Pf1N1B4_5322 -0.8 -2.8 hypothetical protein compare
Pf1N1B4_5554 -0.8 -1.8 hypothetical protein compare
Pf1N1B4_2145 -0.8 -1.7 Translation initiation inhibitor compare
Pf1N1B4_5722 -0.8 -2.0 Periplasmic protein p19 involved in high-affinity Fe2+ transport compare
Pf1N1B4_4627 -0.8 -2.2 FIG00957600: hypothetical protein compare
Pf1N1B4_4582 -0.8 -1.8 hypothetical protein compare
Pf1N1B4_5829 -0.8 -2.0 FIG005107: hypothetical protein compare
Pf1N1B4_314 -0.8 -4.4 Potassium-transporting ATPase B chain (EC 3.6.3.12) (TC 3.A.3.7.1) compare
Pf1N1B4_4776 -0.8 -3.0 Nicotinamidase (EC 3.5.1.19) compare
Pf1N1B4_2331 -0.8 -3.0 Thiazole biosynthesis protein ThiG compare
Pf1N1B4_2227 -0.8 -1.9 FIG019278: hypothetical protein compare
Pf1N1B4_3991 -0.8 -1.7 Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family compare
Pf1N1B4_3403 -0.8 -2.8 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf1N1B4_2878 -0.8 -4.7 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_1234 -0.8 -3.1 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_4132 -0.8 -1.2 Mobile element protein compare
Pf1N1B4_3722 -0.8 -2.2 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_324 -0.8 -1.9 Glycosyl transferase, group 2 family protein compare
Pf1N1B4_4560 -0.8 -2.1 Transcriptional regulator, MerR family compare
Pf1N1B4_1 -0.8 -1.5 Colicin V production protein compare
Pf1N1B4_5005 -0.8 -2.2 LysR family transcriptional regulator STM2281 compare
Pf1N1B4_2823 -0.8 -1.9 COG1496: Uncharacterized conserved protein compare
Pf1N1B4_35 -0.8 -2.1 hypothetical protein compare
Pf1N1B4_3627 -0.8 -1.7 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf1N1B4_980 -0.7 -2.0 hypothetical protein compare
Pf1N1B4_3613 -0.7 -0.9 hypothetical protein compare
Pf1N1B4_4857 -0.7 -2.9 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf1N1B4_5077 -0.7 -2.0 D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) compare
Pf1N1B4_3408 -0.7 -1.9 Transcriptional regulator, AraC family compare
Pf1N1B4_4921 -0.7 -2.1 Haloacid dehalogenase, type II compare
Pf1N1B4_5649 -0.7 -2.0 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) compare
Pf1N1B4_2272 -0.7 -2.9 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_6036 -0.7 -1.7 FIG00953132: hypothetical protein compare
Pf1N1B4_71 -0.7 -3.1 Glucarate dehydratase (EC 4.2.1.40) compare
Pf1N1B4_2959 -0.7 -3.7 FIG067310: hypothetical protein compare
Pf1N1B4_1893 -0.7 -3.2 ABC-type transport system involved in resistance to organic solvents, permease component USSDB6A compare
Pf1N1B4_3415 -0.7 -2.5 Transcriptional regulator, TetR family compare
Pf1N1B4_4533 -0.7 -1.5 Uncharacterized protein ImpH/VasB compare
Pf1N1B4_919 -0.7 -1.9 hypothetical protein compare
Pf1N1B4_867 -0.7 -1.8 Serine acetyltransferase (EC 2.3.1.30) compare
Pf1N1B4_2432 -0.7 -2.0 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf1N1B4_2739 -0.7 -1.8 acetyltransferase, GNAT family compare
Pf1N1B4_4462 -0.7 -2.1 LysR family transcriptional regulator YbhD compare
Pf1N1B4_1561 -0.7 -2.1 FIG00954300: hypothetical protein compare
Pf1N1B4_2490 -0.7 -3.1 Biotin synthesis protein BioC compare
Pf1N1B4_2228 -0.7 -3.0 FIG001590: Putative conserved exported protein precursor compare
Pf1N1B4_1457 -0.7 -4.5 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf1N1B4_2456 -0.7 -2.3 Sarcosine oxidase delta subunit (EC 1.5.3.1) compare
Pf1N1B4_3764 -0.7 -2.2 Allantoicase (EC 3.5.3.4) compare
Pf1N1B4_1351 -0.7 -2.7 Tabtoxin resistance protein compare
Pf1N1B4_4755 -0.7 -2.3 ribosomal protein S6 glutaminyl transferase related protein compare
Pf1N1B4_3911 -0.7 -2.8 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf1N1B4_1914 -0.7 -3.5 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) compare
Pf1N1B4_76 -0.7 -2.1 ATP binding protein compare
Pf1N1B4_1770 -0.7 -2.5 Uncharacterized protein, possibly involved in aromatic compounds catabolism compare
Pf1N1B4_3328 -0.7 -1.4 Rhodanese-like domain protein compare
Pf1N1B4_2885 -0.7 -3.8 Paraquat-inducible protein A compare
Pf1N1B4_349 -0.7 -2.7 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) compare
Pf1N1B4_4549 -0.7 -2.1 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41) compare
Pf1N1B4_875 -0.7 -1.5 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_5552 -0.7 -2.1 hypothetical protein compare
Pf1N1B4_1317 -0.7 -1.8 Sensor histidine kinase/response regulator compare
Pf1N1B4_2493 -0.7 -1.5 Acyl-CoA dehydrogenase (EC 1.3.8.7) compare
Pf1N1B4_108 -0.7 -1.6 FIG00954456: hypothetical protein compare
Pf1N1B4_1827 -0.7 -2.9 FIG00953482: hypothetical protein compare
Pf1N1B4_3795 -0.6 -1.6 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Pf1N1B4_4078 -0.6 -2.5 GDP-mannose pyrophosphatase YffH compare
Pf1N1B4_516 -0.6 -2.0 Sensor histidine kinase compare
Pf1N1B4_4550 -0.6 -1.3 beta-ketoacyl synthase, putative compare
Pf1N1B4_2203 -0.6 -2.7 probable P23 protein compare
Pf1N1B4_4556 -0.6 -2.2 D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) compare
Pf1N1B4_2731 -0.6 -2.2 Uncharacterized protein conserved in bacteria compare
Pf1N1B4_5346 -0.6 -1.9 hypothetical protein compare
Pf1N1B4_5652 -0.6 -2.2 ChlI component of cobalt chelatase involved in B12 biosynthesis compare
Pf1N1B4_2993 -0.6 -2.8 hypothetical protein compare
Pf1N1B4_224 -0.6 -1.7 Isohexenylglutaconyl-CoA hydratase compare
Pf1N1B4_419 -0.6 -1.4 Transcriptional regulator, TetR family compare
Pf1N1B4_5090 -0.6 -2.1 glycosyl transferase, family 2 compare
Pf1N1B4_2858 -0.6 -4.6 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_2085 -0.6 -2.1 Uncharacterized protein similar to VCA0109 compare
Pf1N1B4_2224 -0.6 -1.3 FIG00953390: hypothetical protein compare
Pf1N1B4_879 -0.6 -1.9 Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-) compare
Pf1N1B4_3936 -0.6 -1.4 Transcriptional regulator, LysR family compare
Pf1N1B4_1235 -0.6 -3.1 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf1N1B4_544 -0.6 -1.4 Small-conductance mechanosensitive channel compare
Pf1N1B4_2384 -0.6 -4.3 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_4474 -0.6 -1.8 transcription regulator protein compare
Pf1N1B4_623 -0.6 -1.6 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
Pf1N1B4_989 -0.6 -3.1 Alginate lyase precursor (EC 4.2.2.3) compare
Pf1N1B4_5991 -0.6 -1.2 Transcriptional regulator, AraC family compare
Pf1N1B4_3935 -0.6 -1.5 Major facilitator family transporter compare
Pf1N1B4_1375 -0.6 -4.6 Mannose-6-phosphate isomerase (EC 5.3.1.8) compare
Pf1N1B4_1569 -0.6 -4.9 Twin-arginine translocation protein TatC compare
Pf1N1B4_4250 -0.6 -1.5 Methyltransferase (EC 2.1.1.-) compare
Pf1N1B4_3866 -0.6 -1.4 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
Pf1N1B4_3601 -0.6 -2.3 Flagellar regulatory protein FleQ compare
Pf1N1B4_3928 -0.6 -1.9 FIG00955661: hypothetical protein compare
Pf1N1B4_4041 -0.6 -1.8 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
Pf1N1B4_4136 -0.6 -2.0 hypothetical protein compare
Pf1N1B4_2377 -0.6 -3.0 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf1N1B4_3091 -0.6 -2.4 Membrane-associated zinc metalloprotease compare
Pf1N1B4_4961 -0.6 -1.7 FIG00441227: hypothetical protein compare
Pf1N1B4_3466 -0.6 -1.7 FIG00955605: hypothetical protein compare
Pf1N1B4_3709 -0.6 -2.3 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
Pf1N1B4_4494 -0.6 -1.8 hypothetical protein compare
Pf1N1B4_364 -0.6 -2.2 Rhodanese domain protein UPF0176 compare
Pf1N1B4_3129 -0.6 -1.5 Prophage baseplate assembly protein V compare
Pf1N1B4_1331 -0.6 -2.3 Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) compare
Pf1N1B4_5030 -0.6 -2.5 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) compare
Pf1N1B4_2488 -0.6 -3.0 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf1N1B4_1528 -0.6 -1.8 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_763 -0.6 -2.4 Ferric iron ABC transporter, ATP-binding protein compare
Pf1N1B4_4446 -0.6 -1.0 DNA topoisomerase III (EC 5.99.1.2) compare
Pf1N1B4_2568 -0.6 -1.8 Translation elongation factor Tu compare
Pf1N1B4_3907 -0.6 -1.5 FIG00953287: hypothetical protein compare
Pf1N1B4_3200 -0.6 -2.0 Outer membrane lipoprotein compare
Pf1N1B4_3368 -0.6 -1.4 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf1N1B4_4040 -0.6 -1.3 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_1236 -0.6 -2.9 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf1N1B4_3149 -0.6 -1.3 hypothetical protein compare
Pf1N1B4_618 -0.6 -2.4 Acetyl-CoA carboxylase alpha subunit compare
Pf1N1B4_5827 -0.6 -2.1 Na(+) H(+) antiporter subunit G compare
Pf1N1B4_4613 -0.6 -1.7 FIG00953934: hypothetical protein compare
Pf1N1B4_888 -0.6 -2.3 Transglycosylase, Slt family compare
Pf1N1B4_5954 -0.6 -2.5 hypothetical protein compare
Pf1N1B4_234 -0.6 -1.6 hypothetical protein compare
Pf1N1B4_4964 -0.6 -1.8 Tricarboxylate transport protein TctB compare
Pf1N1B4_219 -0.6 -1.7 Acyclic terpenes utilization regulator AtuR, TetR family compare
Pf1N1B4_1626 -0.6 -2.8 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare


Specific Phenotypes

For 2 genes in this experiment