Experiment set5IT013 for Pseudomonas fluorescens FW300-N1B4

Compare to:

LB 10C

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_1307 -4.3 -4.3 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_1403 -3.7 -13.4 3'-to-5' exoribonuclease RNase R compare
Pf1N1B4_2949 -3.6 -4.6 FIG00956396: hypothetical protein compare
Pf1N1B4_2412 -3.4 -6.7 ATP-dependent 23S rRNA helicase DbpA compare
Pf1N1B4_2037 -2.8 -5.7 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf1N1B4_2736 -2.3 -4.3 ATP-dependent RNA helicase PA3950 compare
Pf1N1B4_1906 -2.1 -4.8 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_327 -2.0 -3.5 hypothetical protein compare
Pf1N1B4_3812 -2.0 -10.4 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_1399 -1.8 -4.4 FIG003573: hypothetical protein compare
Pf1N1B4_2874 -1.8 -3.5 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_2209 -1.7 -7.7 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_350 -1.7 -7.2 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_2939 -1.6 -5.8 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf1N1B4_1426 -1.6 -4.9 hypothetical protein compare
Pf1N1B4_2526 -1.5 -11.2 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf1N1B4_3917 -1.5 -3.5 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf1N1B4_1554 -1.5 -6.4 predicted FeS cluster maintenance protein (from data) compare
Pf1N1B4_1458 -1.5 -5.3 Probable transcription regulator Mig-14 compare
Pf1N1B4_1091 -1.4 -5.8 FIG138315: Putative alpha helix protein compare
Pf1N1B4_1 -1.4 -2.2 Colicin V production protein compare
Pf1N1B4_1568 -1.3 -3.8 Twin-arginine translocation protein TatB compare
Pf1N1B4_1315 -1.3 -6.1 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_175 -1.3 -2.8 sigma-54 dependent transcriptional regulator compare
Pf1N1B4_2036 -1.3 -2.8 Phosphate transport system permease protein PstA (TC 3.A.1.7.1) compare
Pf1N1B4_4040 -1.2 -3.1 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_4051 -1.2 -3.5 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf1N1B4_2284 -1.2 -5.2 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf1N1B4_4035 -1.2 -2.6 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
Pf1N1B4_683 -1.2 -4.3 Fumarate hydratase class I, aerobic (EC 4.2.1.2) compare
Pf1N1B4_3093 -1.2 -2.6 Outer membrane protein H precursor compare
Pf1N1B4_5659 -1.2 -8.3 NfuA Fe-S protein maturation compare
Pf1N1B4_2035 -1.2 -3.8 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf1N1B4_359 -1.1 -2.8 GGDEF domain protein compare
Pf1N1B4_2272 -1.1 -3.2 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_3143 -1.1 -3.0 RecA protein compare
Pf1N1B4_3833 -1.1 -6.0 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_2807 -1.1 -2.6 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf1N1B4_3222 -1.1 -2.2 Ferredoxin compare
Pf1N1B4_3518 -1.1 -2.5 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_4029 -1.1 -3.0 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_1617 -1.1 -4.3 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_1052 -1.0 -2.6 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Pf1N1B4_1434 -1.0 -5.9 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_1632 -1.0 -4.0 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf1N1B4_2105 -1.0 -2.3 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_3906 -1.0 -3.2 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_2674 -1.0 -1.8 hypothetical protein compare
Pf1N1B4_4103 -1.0 -1.4 Flagellar synthesis regulator FleN compare
Pf1N1B4_141 -1.0 -5.3 PvdE, pyoverdine ABC export system, fused ATPase and permease components compare
Pf1N1B4_2493 -0.9 -2.0 Acyl-CoA dehydrogenase (EC 1.3.8.7) compare
Pf1N1B4_1181 -0.9 -1.9 UPF0125 protein yfjF compare
Pf1N1B4_4592 -0.9 -2.7 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) compare
Pf1N1B4_2047 -0.9 -2.4 Chorismate--pyruvate lyase (EC 4.1.3.40) compare
Pf1N1B4_1457 -0.9 -5.5 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf1N1B4_3968 -0.9 -2.2 Spermidine/putrescine-binding periplasmic protein compare
Pf1N1B4_1024 -0.9 -4.4 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf1N1B4_4038 -0.9 -1.5 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_5243 -0.9 -2.5 hypothetical protein compare
Pf1N1B4_758 -0.9 -2.8 Bacterioferritin compare
Pf1N1B4_1126 -0.9 -2.5 Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2) compare
Pf1N1B4_3779 -0.9 -1.6 Hydrolase, alpha/beta fold family functionally coupled to Phosphoribulokinase compare
Pf1N1B4_3468 -0.9 -1.5 Negative regulator of flagellin synthesis FlgM compare
Pf1N1B4_4043 -0.9 -3.1 Type II and III secretion system family protein compare
Pf1N1B4_2853 -0.9 -1.8 Pantoate--beta-alanine ligase (EC 6.3.2.1) compare
Pf1N1B4_4715 -0.9 -1.6 Transcriptional regulator compare
Pf1N1B4_3818 -0.8 -2.0 Propionate catabolism operon transcriptional regulator of GntR family [predicted] compare
Pf1N1B4_644 -0.8 -2.1 Cold shock protein CspC compare
Pf1N1B4_2695 -0.8 -2.2 Rare lipoprotein A precursor compare
Pf1N1B4_673 -0.8 -2.6 MoxR-like ATPases compare
Pf1N1B4_5383 -0.8 -5.4 hypothetical protein compare
Pf1N1B4_4931 -0.8 -1.8 Glutarate-semialdehyde dehydrogenase (EC 1.2.1.20); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.79) compare
Pf1N1B4_1346 -0.8 -2.4 Urea ABC transporter, ATPase protein UrtD compare
Pf1N1B4_5420 -0.8 -2.7 hypothetical protein compare
Pf1N1B4_2283 -0.8 -1.5 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf1N1B4_3998 -0.8 -2.8 putative exported protein compare
Pf1N1B4_1128 -0.7 -2.0 hypothetical protein compare
Pf1N1B4_3751 -0.7 -1.5 FIG00953060: hypothetical protein compare
Pf1N1B4_6004 -0.7 -3.2 tgtA5 cluster protein 1 compare
Pf1N1B4_6036 -0.7 -1.8 FIG00953132: hypothetical protein compare
Pf1N1B4_1456 -0.7 -4.1 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf1N1B4_1340 -0.7 -1.6 ABC transporter (iron.B12.siderophore.hemin) , periplasmic substrate-binding component compare
Pf1N1B4_5838 -0.7 -1.9 FIG00956589: hypothetical protein compare
Pf1N1B4_3290 -0.7 -2.1 Alternative cytochrome c oxidase polypeptide CoxP (EC 1.9.3.1) compare
Pf1N1B4_2039 -0.7 -1.6 hypothetical protein compare
Pf1N1B4_2856 -0.7 -2.2 Poly(A) polymerase (EC 2.7.7.19) compare
Pf1N1B4_213 -0.7 -2.7 Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24) compare
Pf1N1B4_4136 -0.7 -2.3 hypothetical protein compare
Pf1N1B4_2486 -0.7 -1.8 hypothetical protein compare
Pf1N1B4_4782 -0.7 -2.5 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf1N1B4_2858 -0.7 -4.8 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_1614 -0.7 -1.8 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf1N1B4_4571 -0.7 -2.5 ADA regulatory protein / Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf1N1B4_4477 -0.7 -2.2 Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase (EC 1.8.1.4) compare
Pf1N1B4_1335 -0.7 -4.2 Copper metallochaperone, bacterial analog of Cox17 protein compare
Pf1N1B4_3595 -0.7 -1.7 Flagellin protein FlaG compare
Pf1N1B4_762 -0.7 -3.1 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_74 -0.7 -1.8 hypothetical protein compare
Pf1N1B4_127 -0.7 -1.9 FIG032225: Transcriptional regulator, LysR family compare
Pf1N1B4_2401 -0.7 -1.7 Lipoprotein, putative compare
Pf1N1B4_3413 -0.7 -1.7 Transcriptional regulator, LysR family compare
Pf1N1B4_2060 -0.7 -1.2 hypothetical protein compare
Pf1N1B4_2296 -0.7 -1.9 FIG00350678: hypothetical protein compare
Pf1N1B4_3168 -0.7 -2.3 AmpG permease compare
Pf1N1B4_1626 -0.7 -3.8 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_4611 -0.7 -2.0 GlpG protein (membrane protein of glp regulon) compare
Pf1N1B4_1569 -0.7 -5.4 Twin-arginine translocation protein TatC compare
Pf1N1B4_1370 -0.7 -1.4 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Pf1N1B4_5112 -0.7 -2.1 sucrose ABC transporter, substrate-binding component (from data) compare
Pf1N1B4_1610 -0.7 -2.0 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf1N1B4_4041 -0.7 -2.3 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
Pf1N1B4_4731 -0.7 -2.7 Sigma-54 dependent transcriptional regulator compare
Pf1N1B4_3212 -0.7 -3.4 hypothetical protein compare
Pf1N1B4_3722 -0.7 -2.1 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_2878 -0.7 -3.9 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_5224 -0.7 -1.9 tRNA-Arg-CCT compare
Pf1N1B4_578 -0.7 -2.6 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_767 -0.6 -2.7 Glycerol kinase (EC 2.7.1.30) compare
Pf1N1B4_3775 -0.6 -1.2 FIG00956876: hypothetical protein compare
Pf1N1B4_3685 -0.6 -2.6 Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) compare
Pf1N1B4_733 -0.6 -1.5 Methionyl-tRNA synthetase (EC 6.1.1.10) compare
Pf1N1B4_616 -0.6 -1.8 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_3955 -0.6 -2.8 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) compare
Pf1N1B4_620 -0.6 -2.4 Glycine cleavage system H protein compare
Pf1N1B4_5611 -0.6 -1.9 L-carnitine dehydratase/bile acid-inducible protein F (EC 2.8.3.16) compare
Pf1N1B4_2527 -0.6 -3.9 ApaG protein compare
Pf1N1B4_656 -0.6 -3.3 Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) compare
Pf1N1B4_2173 -0.6 -1.5 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf1N1B4_2490 -0.6 -2.5 Biotin synthesis protein BioC compare
Pf1N1B4_1683 -0.6 -1.2 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) compare
Pf1N1B4_483 -0.6 -1.3 Metal-dependent hydrolase related to alanyl-tRNA synthetase compare
Pf1N1B4_3997 -0.6 -1.9 Uncharacterized protein YtfM precursor compare
Pf1N1B4_490 -0.6 -1.9 hypothetical protein compare
Pf1N1B4_188 -0.6 -1.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_3990 -0.6 -2.4 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf1N1B4_1870 -0.6 -2.1 Zinc ABC transporter, ATP-binding protein ZnuC compare
Pf1N1B4_2072 -0.6 -2.4 Phosphoprotein phosphatase PppA compare
Pf1N1B4_3936 -0.6 -1.5 Transcriptional regulator, LysR family compare
Pf1N1B4_2487 -0.6 -3.5 Biotin synthase (EC 2.8.1.6) compare
Pf1N1B4_335 -0.6 -4.5 Glycosyltransferase compare
Pf1N1B4_4001 -0.6 -0.9 Membrane fusion component of tripartite multidrug resistance system compare
Pf1N1B4_4172 -0.6 -1.7 hypothetical protein compare
Pf1N1B4_3692 -0.6 -2.0 Chaperone protein HtpG compare
Pf1N1B4_5827 -0.6 -1.6 Na(+) H(+) antiporter subunit G compare
Pf1N1B4_5127 -0.6 -2.4 ABC-type protease/lipase transport system, ATPase and permease components compare
Pf1N1B4_2177 -0.6 -1.0 FIG00953342: hypothetical protein compare
Pf1N1B4_1544 -0.6 -3.6 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_5906 -0.6 -1.8 Esterase/lipase compare
Pf1N1B4_4418 -0.6 -2.2 hypothetical protein compare
Pf1N1B4_2948 -0.6 -1.6 FIG00954698: hypothetical protein compare
Pf1N1B4_2384 -0.6 -3.7 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_4372 -0.6 -1.6 Galactitol utilization operon repressor compare
Pf1N1B4_2144 -0.6 -4.1 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
Pf1N1B4_2005 -0.6 -0.9 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_2228 -0.6 -2.5 FIG001590: Putative conserved exported protein precursor compare
Pf1N1B4_5939 -0.6 -2.0 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
Pf1N1B4_275 -0.6 -1.1 Organic hydroperoxide resistance transcriptional regulator compare
Pf1N1B4_364 -0.6 -2.0 Rhodanese domain protein UPF0176 compare
Pf1N1B4_1367 -0.6 -2.0 Glycine cleavage system transcriptional activator compare
Pf1N1B4_5960 -0.6 -2.3 Cytochrome b compare
Pf1N1B4_3467 -0.6 -1.4 Flagellar biosynthesis protein FlgN compare
Pf1N1B4_1527 -0.6 -2.1 Queuosine Biosynthesis QueC ATPase compare
Pf1N1B4_419 -0.6 -1.5 Transcriptional regulator, TetR family compare
Pf1N1B4_4755 -0.6 -1.2 ribosomal protein S6 glutaminyl transferase related protein compare
Pf1N1B4_4478 -0.5 -1.8 Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168) compare
Pf1N1B4_3939 -0.5 -1.5 FIG00953489: hypothetical protein compare
Pf1N1B4_3836 -0.5 -0.9 Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) compare
Pf1N1B4_1209 -0.5 -2.3 FIG00959330: hypothetical protein compare
Pf1N1B4_2534 -0.5 -1.8 DnaJ-like protein DjlA compare
Pf1N1B4_5014 -0.5 -1.5 Glutathione reductase (EC 1.8.1.7) compare
Pf1N1B4_3149 -0.5 -1.9 hypothetical protein compare
Pf1N1B4_5249 -0.5 -1.9 Outer membrane protein A precursor compare
Pf1N1B4_349 -0.5 -2.0 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) compare
Pf1N1B4_763 -0.5 -2.2 Ferric iron ABC transporter, ATP-binding protein compare
Pf1N1B4_1159 -0.5 -1.5 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf1N1B4_4253 -0.5 -0.8 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_1107 -0.5 -2.3 D-galactarate dehydratase (EC 4.2.1.42) compare
Pf1N1B4_1827 -0.5 -2.6 FIG00953482: hypothetical protein compare
Pf1N1B4_5239 -0.5 -1.7 hypothetical protein compare
Pf1N1B4_3670 -0.5 -2.1 probable glucosyl transferase compare
Pf1N1B4_5015 -0.5 -2.4 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf1N1B4_2859 -0.5 -4.3 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf1N1B4_2377 -0.5 -3.0 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf1N1B4_2861 -0.5 -2.1 glutamyl-Q-tRNA synthetase compare
Pf1N1B4_3552 -0.5 -1.3 Hypothetical YciO protein, TsaC/YrdC paralog compare
Pf1N1B4_5567 -0.5 -1.7 transcriptional regulator MvaT, P16 subunit, putative compare
Pf1N1B4_846 -0.5 -0.9 hypothetical protein compare
Pf1N1B4_1566 -0.5 -2.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_1023 -0.5 -2.9 Maleylacetoacetate isomerase (EC 5.2.1.2) @ Glutathione S-transferase, zeta (EC 2.5.1.18) compare
Pf1N1B4_4887 -0.5 -1.7 Pirin compare
Pf1N1B4_617 -0.5 -1.1 Carbamate kinase (EC 2.7.2.2) compare
Pf1N1B4_6041 -0.5 -0.9 Carbon storage regulator compare
Pf1N1B4_16 -0.5 -1.9 Cys regulon transcriptional activator CysB compare
Pf1N1B4_5266 -0.5 -1.5 hypothetical protein compare
Pf1N1B4_4331 -0.5 -1.2 Transporter, LysE family compare
Pf1N1B4_2891 -0.5 -2.2 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
Pf1N1B4_2003 -0.5 -2.3 FIG00956226: hypothetical protein compare
Pf1N1B4_4255 -0.5 -1.5 Putative phosphatase YfbT compare
Pf1N1B4_2360 -0.5 -0.8 hypothetical protein compare
Pf1N1B4_753 -0.5 -1.8 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment