Experiment set5IT012 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB no stress 24 hours

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3612 -3.4 -2.3 HflK protein compare
Pf6N2E2_3661 -3.3 -3.9 hypothetical protein compare
Pf6N2E2_3842 -3.2 -4.5 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_2219 -3.0 -3.1 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_3303 -2.9 -5.1 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_3782 -2.6 -4.0 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_2514 -2.5 -5.9 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_3658 -2.5 -6.6 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_4803 -2.4 -2.3 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_3841 -2.4 -5.7 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_5155 -2.3 -3.7 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_3659 -2.3 -5.5 Protein fixF compare
Pf6N2E2_5536 -2.2 -2.4 Holliday junction DNA helicase RuvA compare
Pf6N2E2_288 -2.2 -2.6 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_3461 -2.2 -2.8 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_3252 -2.2 -6.5 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_5103 -2.1 -1.9 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_2506 -2.1 -11.6 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_3460 -2.0 -1.6 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_70 -2.0 -3.6 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_5727 -2.0 -6.3 FIG00955360: hypothetical protein compare
Pf6N2E2_3792 -1.9 -6.5 Glucans biosynthesis protein G precursor compare
Pf6N2E2_2510 -1.9 -4.3 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_5316 -1.9 -1.8 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_5527 -1.9 -2.7 Cold shock protein CspC compare
Pf6N2E2_3475 -1.9 -2.3 hypothetical protein compare
Pf6N2E2_5242 -1.9 -2.7 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_1056 -1.8 -1.1 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_2277 -1.8 -2.9 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_469 -1.8 -2.8 lipoprotein, putative compare
Pf6N2E2_2127 -1.8 -4.2 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_2318 -1.8 -7.4 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_2274 -1.8 -4.3 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_4638 -1.7 -3.4 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_2312 -1.7 -1.8 Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1) compare
Pf6N2E2_3839 -1.7 -3.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_5986 -1.7 -3.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_6057 -1.7 -3.0 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_2218 -1.7 -4.1 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_2507 -1.7 -5.6 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_4153 -1.7 -1.5 Sensory box histidine kinase compare
Pf6N2E2_1886 -1.7 -1.9 hypothetical protein compare
Pf6N2E2_5705 -1.6 -1.8 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_2384 -1.6 -4.2 CmpX compare
Pf6N2E2_5156 -1.6 -2.1 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_3251 -1.6 -7.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_1691 -1.6 -2.5 hypothetical protein compare
Pf6N2E2_5150 -1.6 -5.4 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_5339 -1.6 -5.4 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_5069 -1.6 -3.5 putative Cytochrome bd2, subunit II compare
Pf6N2E2_3253 -1.6 -3.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_987 -1.5 -1.9 hypothetical protein compare
Pf6N2E2_5068 -1.5 -7.8 putative Cytochrome bd2, subunit I compare
Pf6N2E2_5337 -1.5 -3.7 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_2126 -1.5 -4.8 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_1705 -1.5 -1.6 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_3791 -1.5 -6.2 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_5671 -1.5 -2.1 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_2088 -1.4 -1.6 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf6N2E2_2217 -1.4 -3.5 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_1396 -1.4 -2.0 ABC transporter, ATP-binding protein compare
Pf6N2E2_3656 -1.4 -4.2 Probable transcription regulator Mig-14 compare
Pf6N2E2_4072 -1.4 -4.1 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_5338 -1.3 -5.5 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_5430 -1.3 -4.8 Transglycosylase, Slt family compare
Pf6N2E2_5640 -1.3 -2.3 FIG00955597: hypothetical protein compare
Pf6N2E2_2310 -1.3 -7.0 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_5523 -1.3 -3.5 Small-conductance mechanosensitive channel compare
Pf6N2E2_4908 -1.3 -4.8 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_445 -1.3 -4.7 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_3908 -1.3 -4.9 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_2124 -1.3 -1.9 Mg(2+) transport ATPase protein C compare
Pf6N2E2_2323 -1.3 -2.2 Fumarate and nitrate reduction regulatory protein compare
Pf6N2E2_5207 -1.3 -1.9 hypothetical protein compare
Pf6N2E2_2013 -1.2 -1.4 hypothetical protein compare
Pf6N2E2_2574 -1.2 -1.5 Flagellar synthesis regulator FleN compare
Pf6N2E2_3940 -1.2 -5.6 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_302 -1.2 -4.1 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_3373 -1.2 -2.3 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_4706 -1.2 -2.2 Electron transfer flavoprotein, beta subunit compare
Pf6N2E2_2693 -1.2 -1.5 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_2189 -1.2 -3.5 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_3763 -1.1 -2.2 hypothetical protein compare
Pf6N2E2_1246 -1.1 -2.1 FIG00961372: hypothetical protein compare
Pf6N2E2_2080 -1.1 -1.6 hypothetical protein compare
Pf6N2E2_4305 -1.1 -0.8 FIG00959590: hypothetical protein compare
Pf6N2E2_4918 -1.1 -2.5 Ribonucleotide reductase transcriptional regulator NrdR compare
Pf6N2E2_3610 -1.1 -4.2 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_605 -1.1 -2.2 FIG002465: BNR repeat protein compare
Pf6N2E2_4963 -1.1 -1.9 Homoserine dehydrogenase (EC 1.1.1.3) compare
Pf6N2E2_3847 -1.1 -2.9 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_2181 -1.1 -1.4 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_1676 -1.1 -1.7 conserved protein associated with acetyl-CoA C-acyltransferase compare
Pf6N2E2_2675 -1.1 -1.1 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_5425 -1.0 -1.1 hypothetical protein compare
Pf6N2E2_2509 -1.0 -2.1 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_2317 -1.0 -2.7 Putative analog of CcoH, COG3198 compare
Pf6N2E2_6065 -1.0 -1.8 ABC transporter in pyoverdin gene cluster, periplasmic component compare
Pf6N2E2_2513 -1.0 -3.2 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_4369 -1.0 -1.8 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_2039 -1.0 -4.3 Sigma-54 dependent transcriptional regulator compare
Pf6N2E2_2261 -1.0 -4.2 VacJ-like lipoprotein precursor compare
Pf6N2E2_1835 -1.0 -4.2 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_4187 -1.0 -2.7 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_3713 -1.0 -2.4 Acyl carrier protein compare
Pf6N2E2_451 -1.0 -2.3 transcriptional regulator MvaT, P16 subunit, putative compare
Pf6N2E2_2311 -1.0 -4.8 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_3783 -1.0 -3.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_3264 -1.0 -2.1 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_2340 -1.0 -3.5 Transcriptional regulator, GntR family compare
Pf6N2E2_3074 -1.0 -1.8 FIG00960973: hypothetical protein compare
Pf6N2E2_2111 -1.0 -1.9 Dehydrocarnitine CoA-transferase and acetoacetate CoA-transferase, subunit A (from data) compare
Pf6N2E2_671 -1.0 -3.3 2-methylaconitate racemase compare
Pf6N2E2_1081 -1.0 -1.4 probable membrane protein YPO3302 compare
Pf6N2E2_1598 -1.0 -2.1 Nitrate reductase cytochrome c550-type subunit compare
Pf6N2E2_3260 -1.0 -3.2 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_3261 -1.0 -3.2 hypothetical protein compare
Pf6N2E2_3161 -1.0 -2.3 hypothetical protein compare
Pf6N2E2_4640 -1.0 -0.9 hypothetical protein compare
Pf6N2E2_4921 -1.0 -2.3 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) / GTP cyclohydrolase II (EC 3.5.4.25) compare
Pf6N2E2_2112 -1.0 -3.4 Dehydrocarnitine CoA-transferase and acetoacetate CoA-transferase, subunit B (from data) compare
Pf6N2E2_1217 -0.9 -3.7 Gll2069 protein compare
Pf6N2E2_4423 -0.9 -2.2 FIG00953342: hypothetical protein compare
Pf6N2E2_3941 -0.9 -1.8 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_623 -0.9 -1.2 FIG00954674: hypothetical protein compare
Pf6N2E2_2552 -0.9 -3.2 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_5965 -0.9 -2.1 transcriptional regulator compare
Pf6N2E2_612 -0.9 -2.5 Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) (from data) compare
Pf6N2E2_2640 -0.9 -1.7 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_3326 -0.9 -1.2 hypothetical protein compare
Pf6N2E2_3720 -0.9 -1.4 FIG027190: Putative transmembrane protein compare
Pf6N2E2_3179 -0.9 -2.1 FIG021952: putative membrane protein compare
Pf6N2E2_2313 -0.9 -1.9 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_893 -0.9 -2.3 hypothetical protein compare
Pf6N2E2_5508 -0.9 -1.3 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_3529 -0.9 -1.5 Toxin A compare
Pf6N2E2_2549 -0.9 -0.8 hypothetical protein compare
Pf6N2E2_4276 -0.9 -2.8 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_4084 -0.9 -4.0 Transcriptional regulator compare
Pf6N2E2_3221 -0.9 -2.2 FIG00352444: hypothetical protein compare
Pf6N2E2_1625 -0.9 -2.3 Ferric reductase (1.6.99.14) compare
Pf6N2E2_734 -0.9 -1.9 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_5669 -0.9 -2.8 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf6N2E2_5494 -0.9 -2.7 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_2706 -0.9 -2.1 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_3786 -0.9 -1.6 Twin-arginine translocation protein TatC compare
Pf6N2E2_3655 -0.9 -5.0 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_5261 -0.8 -1.0 FIG00956983: hypothetical protein compare
Pf6N2E2_664 -0.8 -1.5 Acetoin catabolism protein X compare
Pf6N2E2_178 -0.8 -0.9 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_2646 -0.8 -0.8 FIG00953416: hypothetical protein compare
Pf6N2E2_4556 -0.8 -1.5 FIG00953078: hypothetical protein compare
Pf6N2E2_5936 -0.8 -1.2 Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48) compare
Pf6N2E2_1391 -0.8 -2.0 DNA-binding response regulator, LuxR family compare
Pf6N2E2_2707 -0.8 -1.7 Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) compare
Pf6N2E2_2527 -0.8 -2.5 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_2474 -0.8 -4.7 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_1450 -0.8 -1.5 FIG00960438: hypothetical protein compare
Pf6N2E2_238 -0.8 -1.6 hypothetical protein compare
Pf6N2E2_1883 -0.8 -3.2 Transcriptional regulator, TetR family compare
Pf6N2E2_4889 -0.8 -2.6 Putative transport protein compare
Pf6N2E2_2508 -0.8 -1.6 hypothetical protein compare
Pf6N2E2_3607 -0.8 -3.7 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_3024 -0.8 -2.1 Phage tail fibers compare
Pf6N2E2_5252 -0.8 -1.4 FIG00956396: hypothetical protein compare
Pf6N2E2_3611 -0.8 -0.6 HflC protein compare
Pf6N2E2_1747 -0.8 -1.5 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_3663 -0.8 -4.0 Glycosyl transferase compare
Pf6N2E2_2074 -0.8 -1.1 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_4059 -0.8 -0.8 DNA-binding protein HU-alpha compare
Pf6N2E2_4825 -0.8 -3.2 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_4993 -0.8 -1.3 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf6N2E2_2059 -0.8 -1.9 ChlI component of cobalt chelatase involved in B12 biosynthesis compare
Pf6N2E2_1611 -0.8 -1.6 Phosphonate ABC transporter permease protein phnE2 (TC 3.A.1.9.1) compare
Pf6N2E2_1869 -0.8 -2.8 hypothetical protein compare
Pf6N2E2_4279 -0.8 -4.4 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_338 -0.8 -1.3 Transcriptional regulator, AraC family compare
Pf6N2E2_855 -0.7 -1.5 Transcriptional regulator, IclR family compare
Pf6N2E2_37 -0.7 -1.9 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I compare
Pf6N2E2_4159 -0.7 -1.3 Cytochrome c4 compare
Pf6N2E2_620 -0.7 -3.6 BatD compare
Pf6N2E2_1177 -0.7 -2.8 putative exported protein compare
Pf6N2E2_40 -0.7 -2.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_1034 -0.7 -0.8 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_6061 -0.7 -4.0 Methylisocitrate lyase (EC 4.1.3.30) (from data) compare
Pf6N2E2_5567 -0.7 -1.1 Glutamate Aspartate transport ATP-binding protein GltL (TC 3.A.1.3.4) compare
Pf6N2E2_5049 -0.7 -1.4 acetyltransferase, GNAT family compare
Pf6N2E2_4826 -0.7 -3.1 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_4454 -0.7 -3.0 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_2119 -0.7 -2.4 hypothetical protein compare
Pf6N2E2_2962 -0.7 -1.5 ABC transporter for L-Lysine, ATPase component (from data) compare
Pf6N2E2_71 -0.7 -1.9 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_754 -0.7 -0.9 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf6N2E2_243 -0.7 -3.1 L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) compare
Pf6N2E2_5133 -0.7 -1.8 FIG00953980: hypothetical protein compare
Pf6N2E2_1445 -0.7 -1.5 Glutathione S-transferase compare
Pf6N2E2_3521 -0.7 -3.6 Sensor histidine kinase/response regulator compare
Pf6N2E2_1404 -0.7 -1.7 Nitrous oxide reductase maturation transmembrane protein NosY compare
Pf6N2E2_3062 -0.7 -2.2 Membrane-associated zinc metalloprotease compare
Pf6N2E2_3698 -0.7 -1.7 Nicotinamidase family protein YcaC compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in lb experiments