Experiment set5IT012 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Putrescine Dihydrochloride carbon source

200 most important genes:

  gene name fitness t score description  
AO353_20695 -5.4 -5.3 O-succinylhomoserine sulfhydrylase compare
AO353_13070 -5.3 -6.3 phosphoserine phosphatase compare
AO353_12070 -4.8 -8.0 imidazoleglycerol-phosphate dehydratase compare
AO353_05115 -4.7 -11.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_07515 -4.7 -3.2 transporter compare
AO353_07220 -4.7 -8.4 anthranilate synthase compare
AO353_12085 -4.7 -9.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_20625 -4.6 -4.4 3-isopropylmalate dehydratase compare
AO353_00430 -4.5 -4.4 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_02070 -4.5 -6.9 prephenate dehydratase compare
AO353_11775 -4.4 -9.0 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_20665 -4.3 -11.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_08510 -4.3 -5.1 3-phosphoglycerate dehydrogenase compare
AO353_07230 -4.2 -19.1 anthranilate synthase compare
AO353_14505 -4.2 -14.4 ketol-acid reductoisomerase compare
AO353_20635 -4.2 -14.6 3-isopropylmalate dehydrogenase compare
AO353_10670 -4.1 -10.3 shikimate dehydrogenase compare
AO353_22800 -4.0 -3.9 sulfite reductase compare
AO353_12090 -4.0 -2.8 imidazole glycerol phosphate synthase subunit HisF compare
AO353_08180 -4.0 -15.2 homoserine O-acetyltransferase compare
AO353_08185 -4.0 -11.8 methionine biosynthesis protein MetW compare
AO353_08580 -4.0 -15.9 spermidine/putrescine ABC transporter substrate-binding protein conserved
AO353_20620 -4.0 -8.3 isopropylmalate isomerase compare
AO353_29315 -4.0 -14.8 spermidine/putrescine ABC transporter permease conserved
AO353_13165 -4.0 -8.0 ATP phosphoribosyltransferase regulatory subunit compare
AO353_12115 -3.9 -2.7 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_20175 -3.9 -2.7 ATP-dependent Clp protease proteolytic subunit compare
AO353_02075 -3.9 -13.5 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_29320 -3.8 -7.7 putrescine ABC transporter, permease component (from data) compare
AO353_12500 -3.8 -2.6 shikimate kinase compare
AO353_12365 -3.8 -5.7 phosphoribosyl-AMP cyclohydrolase compare
AO353_08570 -3.8 -14.0 transporter conserved
AO353_08345 -3.8 -11.0 dihydroxy-acid dehydratase compare
AO353_08685 -3.8 -8.7 N-acetylglutamate synthase compare
AO353_29305 -3.7 -7.1 Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) (from data) conserved
AO353_08465 -3.7 -18.4 phosphoenolpyruvate-protein phosphotransferase compare
AO353_00650 -3.7 -3.6 cytochrome biogenesis protein compare
AO353_13160 -3.7 -3.6 membrane protease HflC compare
AO353_00310 -3.7 -11.9 transaldolase compare
AO353_05110 -3.6 -13.4 histidinol dehydrogenase compare
AO353_29310 -3.6 -11.0 transporter conserved
AO353_11505 -3.5 -13.4 succinate-semialdehyde dehydrogenase (EC 1.2.1.16) (from data) conserved
AO353_08015 -3.5 -8.5 5,10-methylenetetrahydrofolate reductase compare
AO353_08475 -3.5 -11.9 phosphoserine phosphatase compare
AO353_12075 -3.5 -10.9 imidazole glycerol phosphate synthase subunit HisH compare
AO353_12345 -3.5 -3.4 twin-arginine protein translocation system subunit TatC compare
AO353_14400 -3.4 -5.6 Fis family transcriptional regulator compare
AO353_12360 -3.4 -11.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_14495 -3.4 -14.2 acetolactate synthase 3 catalytic subunit compare
AO353_10710 -3.4 -6.4 tryptophan synthase subunit beta compare
AO353_08165 -3.3 -3.9 pyrroline-5-carboxylate reductase compare
AO353_02710 -3.3 -14.8 (p)ppGpp synthetase compare
AO353_15925 -3.3 -13.3 2-isopropylmalate synthase compare
AO353_07215 -3.2 -9.7 anthranilate phosphoribosyltransferase compare
AO353_08565 -3.2 -16.4 spermidine/putrescine ABC transporter permease conserved
AO353_07210 -3.1 -6.3 indole-3-glycerol-phosphate synthase compare
AO353_04155 -3.1 -14.4 ornithine carbamoyltransferase compare
AO353_01550 -3.1 -8.4 hypothetical protein compare
AO353_04105 -3.1 -10.8 argininosuccinate synthase compare
AO353_07155 -3.1 -8.7 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_00620 -3.0 -3.6 cytochrome C oxidase Cbb3 compare
AO353_15250 -3.0 -5.0 cytochrome B compare
AO353_08780 -3.0 -9.7 5-formyltetrahydrofolate cyclo-ligase compare
AO353_09000 -2.9 -7.1 argininosuccinate lyase compare
AO353_10025 -2.9 -15.1 pyruvate carboxylase subunit B compare
AO353_09240 -2.9 -3.5 acetylglutamate kinase compare
AO353_13155 -2.9 -5.5 hypothetical protein compare
AO353_14115 -2.9 -8.8 gamma-glutamyl kinase compare
AO353_10030 -2.9 -11.2 pyruvate carboxylase subunit A compare
AO353_05075 -2.8 -12.5 adenylylsulfate kinase compare
AO353_06495 -2.8 -7.5 gamma-glutamyl phosphate reductase compare
AO353_15170 -2.8 -3.0 cytochrome D ubiquinol oxidase subunit III compare
AO353_19060 -2.7 -7.2 CysB family transcriptional regulator compare
AO353_14370 -2.7 -8.1 glucose-6-phosphate isomerase compare
AO353_14500 -2.7 -7.3 acetolactate synthase 3 regulatory subunit compare
AO353_02685 -2.7 -5.3 phosphoribosylglycinamide formyltransferase compare
AO353_05080 -2.6 -12.4 sulfate adenylyltransferase compare
AO353_14595 -2.6 -10.6 carbonate dehydratase compare
AO353_00510 -2.6 -7.1 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_19090 -2.5 -3.4 MarR family transcriptional regulator compare
AO353_10705 -2.5 -6.0 tryptophan synthase subunit alpha compare
AO353_13640 -2.5 -6.1 histidine kinase compare
AO353_08590 -2.5 -10.1 glutamine synthetase conserved
AO353_07495 -2.5 -15.6 acyl-CoA dehydrogenase compare
AO353_07525 -2.4 -13.4 biotin synthase compare
AO353_18540 -2.4 -3.6 pseudouridine synthase compare
AO353_11850 -2.4 -5.9 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_09155 -2.3 -8.4 amino acid dehydrogenase compare
AO353_10945 -2.3 -4.1 cytochrome C compare
AO353_05550 -2.3 -6.4 pseudouridine synthase compare
AO353_10035 -2.3 -7.9 LysR family transcriptional regulator compare
AO353_03590 -2.3 -4.3 crossover junction endodeoxyribonuclease RuvC compare
AO353_07560 -2.3 -12.1 malate synthase G compare
AO353_20540 -2.2 -8.5 aromatic amino acid aminotransferase compare
AO353_05625 -2.2 -2.5 transcription elongation factor GreA compare
AO353_05690 -2.1 -4.8 SsrA-binding protein compare
AO353_27735 -2.1 -8.3 isocitrate lyase compare
AO353_14420 -2.1 -5.5 molecular chaperone DnaK compare
AO353_08045 -2.1 -12.6 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_03580 -2.1 -4.4 ATP-dependent DNA helicase RuvB compare
AO353_02250 -2.1 -4.1 chorismate synthase compare
AO353_00825 -2.1 -4.7 porin compare
AO353_05520 -2.0 -5.2 nicotinate-nucleotide pyrophosphorylase compare
AO353_14940 -2.0 -4.2 malate:quinone oxidoreductase compare
AO353_08585 -2.0 -9.3 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) (from data) conserved
AO353_20170 -2.0 -6.9 trigger factor compare
AO353_04355 -2.0 -2.9 homoserine dehydrogenase compare
AO353_23495 -2.0 -3.4 SAM-dependent methyltransferase compare
AO353_00605 -2.0 -7.3 cytochrome C oxidase Cbb3 compare
AO353_03615 -1.9 -4.2 cold-shock protein compare
AO353_00610 -1.9 -2.0 cytochrome C oxidase Cbb3 compare
AO353_06050 -1.9 -8.2 exodeoxyribonuclease V subunit gamma compare
AO353_24130 -1.9 -2.9 hypothetical protein compare
AO353_09885 -1.8 -2.3 transcriptional regulator PhoU compare
AO353_12870 -1.8 -10.1 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
AO353_08470 -1.8 -4.2 RNA pyrophosphohydrolase compare
AO353_07355 -1.8 -7.3 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_02940 -1.7 -3.1 DNA-binding protein compare
AO353_05800 -1.7 -4.9 hypothetical protein compare
AO353_06040 -1.7 -4.1 exodeoxyribonuclease V subunit alpha compare
AO353_07505 -1.7 -8.8 dethiobiotin synthetase compare
AO353_08505 -1.7 -10.3 FAD-linked oxidase compare
AO353_07520 -1.7 -9.7 8-amino-7-oxononanoate synthase compare
AO353_00515 -1.7 -4.1 hypothetical protein compare
AO353_08885 -1.6 -11.4 polyphosphate kinase compare
AO353_03525 -1.6 -8.2 quinolinate synthase A compare
AO353_14740 -1.6 -4.6 GTP-binding protein compare
AO353_07510 -1.6 -7.4 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_03630 -1.6 -9.9 porin compare
AO353_13140 -1.6 -6.1 tRNA dimethylallyltransferase compare
AO353_27650 -1.5 -5.0 cell division protein FtsK compare
AO353_22355 -1.5 -7.2 multidrug ABC transporter permease conserved
AO353_08265 -1.5 -5.4 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_14405 -1.5 -8.0 ATPase compare
AO353_03020 -1.5 -6.1 arginine N-succinyltransferase compare
AO353_08880 -1.5 -2.6 exopolyphosphatase compare
AO353_02580 -1.5 -11.0 Long-chain fatty acid transport protein compare
AO353_15185 -1.4 -4.6 ATPase compare
AO353_14220 -1.4 -1.3 ribosomal large subunit pseudouridine synthase D compare
AO353_09135 -1.4 -1.7 cytochrome C compare
AO353_10430 -1.4 -3.5 chromosome partitioning protein ParB compare
AO353_20340 -1.4 -3.5 gamma-carboxygeranoyl-CoA hydratase compare
AO353_02810 -1.4 -6.3 histidine kinase compare
AO353_12240 -1.4 -5.0 histidine utilization repressor compare
AO353_09745 -1.4 -2.3 hypothetical protein compare
AO353_11750 -1.4 -3.0 ATPase compare
AO353_02600 -1.4 -2.7 alpha-ribazole phosphatase compare
AO353_04220 -1.4 -4.6 chemotaxis protein CheY compare
AO353_27675 -1.3 -6.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
AO353_04565 -1.3 -5.0 nucleoid-associated protein compare
AO353_20095 -1.3 -4.8 histidine kinase compare
AO353_10445 -1.3 -2.3 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_07325 -1.3 -2.0 diadenosine tetraphosphatase compare
AO353_14930 -1.3 -3.4 GntR family transcriptional regulator compare
AO353_06850 -1.2 -3.4 MFS transporter compare
AO353_26830 -1.2 -3.6 histidine kinase compare
AO353_22380 -1.2 -5.1 amino acid ABC transporter substrate-binding protein conserved
AO353_00750 -1.2 -3.6 GntR family transcriptional regulator compare
AO353_08595 -1.2 -6.7 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) compare
AO353_22350 -1.2 -3.8 LuxR family transcriptional regulator compare
AO353_27710 -1.2 -2.3 DNA repair protein compare
AO353_20185 -1.2 -5.0 DNA-binding protein compare
AO353_09440 -1.2 -2.4 type VI secretion protein compare
AO353_21330 -1.2 -5.8 RpiR family transcriptional regulator compare
AO353_22360 -1.2 -2.5 ABC transporter ATP-binding protein compare
AO353_02555 -1.2 -7.9 histidine kinase compare
AO353_06045 -1.2 -5.7 exodeoxyribonuclease V subunit beta compare
AO353_05105 -1.2 -6.5 histidinol-phosphate aminotransferase compare
AO353_22365 -1.2 -4.9 hypothetical protein compare
AO353_13715 -1.2 -3.3 translation initiation factor Sui1 compare
AO353_16940 -1.1 -4.2 deoxycytidine triphosphate deaminase compare
AO353_09010 -1.1 -2.8 hypothetical protein compare
AO353_16495 -1.1 -5.1 zinc metallopeptidase RseP compare
AO353_15490 -1.1 -1.7 hypothetical protein compare
AO353_13245 -1.1 -4.1 hypothetical protein compare
AO353_14775 -1.1 -4.5 hypothetical protein compare
AO353_09260 -1.1 -4.6 ribonuclease PH compare
AO353_22375 -1.1 -2.8 cytochrome c-550 PedF compare
AO353_22415 -1.1 -3.0 alcohol dehydrogenase compare
AO353_12105 -1.1 -4.6 peptidase S41 compare
AO353_09160 -1.1 -6.9 AsnC family transcriptional regulator conserved
AO353_18890 -1.1 -4.1 cytochrome C compare
AO353_17620 -1.1 -8.6 L-aspartate oxidase compare
AO353_08560 -1.1 -4.6 spermidine/putrescine ABC transporter permease compare
AO353_13100 -1.0 -1.5 GTPase RsgA compare
AO353_01795 -1.0 -2.6 hypothetical protein compare
AO353_22370 -1.0 -2.5 branched-chain amino acid ABC transporter substrate-binding protein compare
AO353_16810 -1.0 -2.3 recombinase RecX compare
AO353_22385 -1.0 -6.9 dehydrogenase compare
AO353_08120 -1.0 -3.4 hypothetical protein compare
AO353_16805 -1.0 -4.6 recombinase RecA compare
AO353_09045 -1.0 -1.9 hypothetical protein compare
AO353_11165 -1.0 -5.4 hypothetical protein compare
AO353_04665 -1.0 -6.7 ATPase compare
AO353_24255 -1.0 -3.1 hypothetical protein compare
AO353_14150 -1.0 -1.2 peptidylprolyl isomerase compare
AO353_02270 -1.0 -3.0 isochorismatase compare
AO353_07075 -1.0 -3.7 elongation factor Tu compare
AO353_12460 -1.0 -5.1 malate dehydrogenase compare
AO353_08130 -1.0 -2.2 uracil phosphoribosyltransferase compare


Specific Phenotypes

For 14 genes in this experiment

For carbon source Putrescine Dihydrochloride in Pseudomonas fluorescens FW300-N2E3

For carbon source Putrescine Dihydrochloride across organisms