Experiment set5IT012 for Klebsiella michiganensis M5al

Compare to:

D,L-Malic Acid carbon source

200 most important genes:

  gene name fitness t score description  
BWI76_RS20965 -8.9 -5.9 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS18930 -7.6 -6.4 histidinol-phosphate transaminase compare
BWI76_RS25115 -7.5 -5.2 argininosuccinate synthase compare
BWI76_RS20350 -7.4 -7.4 amidophosphoribosyltransferase compare
BWI76_RS00850 -7.2 -9.0 acetylglutamate kinase compare
BWI76_RS04250 -7.2 -7.0 homoserine kinase compare
BWI76_RS08520 -7.2 -4.8 colicin transporter TolQ compare
BWI76_RS04670 -6.9 -8.2 3-isopropylmalate dehydratase large subunit compare
BWI76_RS18920 -6.8 -4.7 ATP phosphoribosyltransferase compare
BWI76_RS04470 -6.8 -8.1 carbamoyl phosphate synthase large subunit compare
BWI76_RS04255 -6.7 -6.6 threonine synthase compare
BWI76_RS18955 -6.6 -6.4 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS21475 -6.5 -7.8 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS20355 -6.5 -4.1 colicin V production protein compare
BWI76_RS10680 -6.5 -3.9 tartrate dehydrogenase compare
BWI76_RS00990 -6.5 -7.7 ketol-acid reductoisomerase compare
BWI76_RS05840 -6.4 -6.2 glutamate 5-kinase compare
BWI76_RS05835 -6.3 -4.4 gamma-glutamyl-phosphate reductase compare
BWI76_RS00805 -6.3 -4.5 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS18950 -6.2 -5.4 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS18925 -6.2 -8.5 histidinol dehydrogenase compare
BWI76_RS18940 -6.2 -7.4 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS20895 -6.2 -6.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS18935 -6.2 -6.4 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS01615 -6.1 -10.2 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS00785 -6.1 -4.2 cystathionine gamma-synthase compare
BWI76_RS11965 -6.0 -4.6 orotidine-5'-phosphate decarboxylase compare
BWI76_RS08385 -6.0 -3.3 citrate (Si)-synthase compare
BWI76_RS04160 -5.9 -6.1 phosphoserine phosphatase compare
BWI76_RS23920 -5.9 -5.8 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS00980 -5.9 -10.6 PLP-dependent threonine dehydratase compare
BWI76_RS11275 -5.9 -7.4 sensor protein PhoQ compare
BWI76_RS00845 -5.8 -9.7 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS01325 -5.8 -3.8 twin-arginine translocase subunit TatB compare
BWI76_RS04245 -5.8 -13.9 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS25320 -5.7 -10.3 glutamate synthase compare
BWI76_RS10990 -5.7 -3.3 dihydroorotase compare
BWI76_RS04680 -5.6 -12.7 2-isopropylmalate synthase compare
BWI76_RS22805 -5.6 -10.7 GTP diphosphokinase compare
BWI76_RS26460 -5.5 -6.3 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS04510 -5.5 -3.8 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS01210 -5.5 -4.3 tyrosine recombinase XerC compare
BWI76_RS21265 -5.5 -15.7 phosphoribosylformylglycinamidine synthase compare
BWI76_RS22755 -5.4 -7.8 phosphoadenosine phosphosulfate reductase compare
BWI76_RS04465 -5.4 -6.4 carbamoyl-phosphate synthase small subunit compare
BWI76_RS04665 -5.4 -18.4 3-isopropylmalate dehydratase small subunit compare
BWI76_RS01655 -5.4 -9.7 homoserine O-succinyltransferase compare
BWI76_RS05120 -5.4 -11.0 bifunctional glycosyl transferase/transpeptidase compare
BWI76_RS08535 -5.3 -3.5 translocation protein TolB compare
BWI76_RS04685 -5.2 -11.7 putative leucine operon leader peptide compare
BWI76_RS23220 -5.2 -8.7 amino-acid N-acetyltransferase compare
BWI76_RS20155 -5.2 -3.4 NADH-quinone oxidoreductase subunit I compare
BWI76_RS04675 -5.2 -7.1 3-isopropylmalate dehydrogenase compare
BWI76_RS27475 -5.1 -11.5 regulatory protein GntR family protein compare
BWI76_RS09645 -5.1 -2.0 thioredoxin-disulfide reductase compare
BWI76_RS09755 -5.1 -10.3 phosphoserine transaminase compare
BWI76_RS24285 -5.0 -9.0 cystathionine beta-lyase compare
BWI76_RS02815 -5.0 -4.3 fructose-bisphosphatase class I compare
BWI76_RS16965 -4.9 -2.8 murein lipoprotein compare
BWI76_RS25315 -4.9 -13.2 glutamate synthase large subunit compare
BWI76_RS11860 -4.9 -9.6 anthranilate synthase component I compare
BWI76_RS00975 -4.9 -8.2 dihydroxy-acid dehydratase compare
BWI76_RS22760 -4.8 -11.1 sulfite reductase subunit beta compare
BWI76_RS07070 -4.8 -6.6 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS08525 -4.8 -4.6 colicin transporter compare
BWI76_RS10685 -4.8 -8.5 LysR family transcriptional regulator compare
BWI76_RS23360 -4.8 -5.7 diaminopimelate decarboxylase compare
BWI76_RS03010 -4.8 -7.5 ornithine carbamoyltransferase compare
BWI76_RS09910 -4.8 -17.6 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS15975 -4.8 -1.9 hypothetical protein compare
BWI76_RS27385 -4.8 -7.2 orotate phosphoribosyltransferase compare
BWI76_RS04645 -4.7 -6.2 3-dehydroquinase compare
BWI76_RS00140 -4.7 -1.8 phosphate transport system regulator PhoU compare
BWI76_RS11855 -4.6 -6.1 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS25335 -4.5 -4.8 stringent starvation protein A compare
BWI76_RS22765 -4.5 -14.9 sulfite reductase subunit alpha compare
BWI76_RS00855 -4.4 -8.5 argininosuccinate lyase compare
BWI76_RS21465 -4.4 -5.3 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS26455 -4.3 -4.1 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS20640 -4.3 -6.5 cysteine synthase A compare
BWI76_RS09760 -4.3 -5.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS21070 -4.3 -3.4 outer membrane protein assembly factor BamB compare
BWI76_RS02995 -4.3 -8.5 aspartate carbamoyltransferase compare
BWI76_RS05200 -4.3 -2.9 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS11850 -4.2 -6.7 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS26085 -4.2 -3.5 3-dehydroquinate synthase compare
BWI76_RS01610 -4.2 -6.0 phosphoribosylamine--glycine ligase compare
BWI76_RS23365 -4.1 -5.7 LysR family transcriptional regulator compare
BWI76_RS16250 -4.1 -6.5 DNA-binding response regulator compare
BWI76_RS04705 -4.1 -7.3 DNA-binding transcriptional regulator FruR compare
BWI76_RS09660 -4.0 -2.7 DNA translocase FtsK compare
BWI76_RS23240 -4.0 -3.8 exonuclease V subunit gamma compare
BWI76_RS11845 -3.9 -3.1 tryptophan synthase subunit beta compare
BWI76_RS00385 -3.9 -9.0 nitrogen assimilation regulatory protein compare
BWI76_RS25280 -3.9 -2.7 RNase adaptor protein RapZ compare
BWI76_RS20435 -3.8 -2.1 chorismate synthase compare
BWI76_RS09030 -3.8 -7.0 transpeptidase compare
BWI76_RS11840 -3.8 -4.1 tryptophan synthase subunit alpha compare
BWI76_RS25475 -3.7 -13.7 TIGR02099 family protein compare
BWI76_RS16425 -3.7 -4.8 hypothetical protein compare
BWI76_RS22700 -3.6 -6.1 sulfate adenylyltransferase subunit 2 compare
BWI76_RS15825 -3.6 -2.4 hypothetical protein compare
BWI76_RS08530 -3.6 -2.1 protein TolA compare
BWI76_RS08395 -3.6 -2.8 succinate dehydrogenase cytochrome b556 large subunit compare
BWI76_RS04240 -3.6 -3.0 thr operon leader peptide compare
BWI76_RS09970 -3.5 -3.4 porin OmpA compare
BWI76_RS00400 -3.5 -2.2 glutamine synthetase compare
BWI76_RS00390 -3.5 -7.2 two-component system sensor histidine kinase NtrB compare
BWI76_RS16260 -3.5 -2.7 two-component sensor histidine kinase compare
BWI76_RS22690 -3.5 -3.2 adenylyl-sulfate kinase compare
BWI76_RS03225 -3.5 -10.3 transcriptional regulator compare
BWI76_RS22695 -3.4 -7.9 sulfate adenylyltransferase compare
BWI76_RS20140 -3.3 -4.4 NADH-quinone oxidoreductase subunit L compare
BWI76_RS26670 -3.3 -7.1 two-component sensor histidine kinase compare
BWI76_RS01185 -3.3 -2.3 adenylate cyclase compare
BWI76_RS07065 -3.3 -11.0 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS09615 -3.2 -3.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
BWI76_RS02530 -3.2 -3.8 tRNA dimethylallyltransferase compare
BWI76_RS00985 -3.2 -6.9 transcriptional regulator IlvY compare
BWI76_RS09635 -3.2 -4.3 amino acid ABC transporter ATP-binding protein compare
BWI76_RS23265 -3.1 -2.3 hypothetical protein compare
BWI76_RS19555 -3.1 -6.3 Beta-glucoside phosphotransferase system, IIA/IIB/IIC components (from data) compare
BWI76_RS02410 -3.0 -2.1 EF-P beta-lysylation protein EpmB compare
BWI76_RS20130 -3.0 -7.6 NADH-quinone oxidoreductase subunit N compare
BWI76_RS27235 -2.9 -10.1 murein hydrolase activator EnvC compare
BWI76_RS23230 -2.9 -3.4 exodeoxyribonuclease V subunit beta compare
BWI76_RS05180 -2.9 -13.2 serine endoprotease DegQ compare
BWI76_RS05680 -2.8 -4.6 LacI family transcriptional regulator compare
BWI76_RS20180 -2.8 -6.9 NADH-quinone oxidoreductase subunit C/D compare
BWI76_RS20995 -2.8 -3.2 RNA degradosome polyphosphate kinase compare
BWI76_RS25415 -2.8 -4.7 GntR family transcriptional regulator compare
BWI76_RS20190 -2.8 -4.3 NADH-quinone oxidoreductase subunit A compare
BWI76_RS20170 -2.8 -4.2 NADH-quinone oxidoreductase subunit F compare
BWI76_RS20160 -2.7 -3.0 NADH-quinone oxidoreductase subunit H compare
BWI76_RS25420 -2.7 -8.3 malate dehydrogenase compare
BWI76_RS09640 -2.7 -6.3 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS03415 -2.6 -5.6 LacI family transcriptional regulator compare
BWI76_RS19905 -2.6 -5.8 OmpK36 porin compare
BWI76_RS27305 -2.6 -9.1 glycosyl transferase compare
BWI76_RS08405 -2.5 -2.3 succinate dehydrogenase flavoprotein subunit compare
BWI76_RS01350 -2.5 -1.4 NAD(P)H-flavin reductase compare
BWI76_RS19685 -2.5 -7.1 lysine transporter compare
BWI76_RS22420 -2.5 -3.7 LacI family transcriptional regulator compare
BWI76_RS27310 -2.4 -9.3 glycosyltransferase compare
BWI76_RS26395 -2.4 -3.6 cell division protein FtsE compare
BWI76_RS06495 -2.4 -8.3 cytochrome ubiquinol oxidase subunit II compare
BWI76_RS26665 -2.4 -3.4 DNA-binding response regulator compare
BWI76_RS27390 -2.4 -3.0 ribonuclease PH compare
BWI76_RS19705 -2.4 -5.8 kinase compare
BWI76_RS21140 -2.4 -3.0 molecular chaperone HscA compare
BWI76_RS26940 -2.3 -8.0 transcriptional regulator compare
BWI76_RS02735 -2.3 -4.6 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS20150 -2.3 -2.5 NADH:ubiquinone oxidoreductase subunit J compare
BWI76_RS25410 -2.2 -11.7 GntR family transcriptional regulator with compare
BWI76_RS06605 -2.2 -6.5 ammonium transporter compare
BWI76_RS20165 -2.2 -6.3 NADH-quinone oxidoreductase subunit G compare
BWI76_RS01330 -2.2 -4.2 twin-arginine translocase subunit TatC compare
BWI76_RS27860 -2.2 -7.4 D-serine dehydratase compare
BWI76_RS20145 -2.2 -2.2 NADH-quinone oxidoreductase subunit K compare
BWI76_RS04530 -2.2 -3.5 peptidylprolyl isomerase SurA compare
BWI76_RS20360 -2.1 -1.4 cell division protein DedD compare
BWI76_RS20135 -2.1 -5.7 NADH-quinone oxidoreductase subunit M compare
BWI76_RS27450 -2.1 -4.3 ferredoxin--NADP(+) reductase compare
BWI76_RS07995 -2.0 -3.6 twin-arginine translocase subunit TatA compare
BWI76_RS05015 -2.0 -3.0 transcriptional regulator compare
BWI76_RS23420 -2.0 -7.6 LacI family transcriptional regulator compare
BWI76_RS06535 -2.0 -6.0 endopeptidase La compare
BWI76_RS19330 -1.9 -1.6 HAD family hydrolase compare
BWI76_RS26055 -1.9 -8.0 siroheme synthase compare
BWI76_RS08210 -1.9 -2.1 N-acetylglucosamine-6-phosphate deacetylase compare
BWI76_RS03080 -1.9 -4.4 (Fe-S)-cluster assembly protein compare
BWI76_RS26390 -1.9 -3.1 cell division protein FtsX compare
BWI76_RS06525 -1.8 -3.7 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS27075 -1.8 -5.1 IclR family transcriptional regulator compare
BWI76_RS09610 -1.8 -4.2 ATP-dependent Clp protease adaptor ClpS compare
BWI76_RS01070 -1.8 -6.1 thiol reductase thioredoxin compare
BWI76_RS06730 -1.8 -3.0 lac repressor compare
BWI76_RS24075 -1.8 -3.2 glutathione synthase compare
BWI76_RS25065 -1.8 -3.2 polyribonucleotide nucleotidyltransferase compare
BWI76_RS26760 -1.7 -4.5 C4-dicarboxylate transport protein DctA (from data) compare
BWI76_RS25480 -1.7 -2.6 ribonuclease E/G compare
BWI76_RS20695 -1.7 -4.4 sulfate/thiosulfate transporter permease subunit compare
BWI76_RS23930 -1.7 -3.8 transcriptional regulator ArgP compare
BWI76_RS03880 -1.7 -2.6 homoprotocatechuate degradation operon regulator, HpaR compare
BWI76_RS26075 -1.7 -3.6 DNA adenine methylase compare
BWI76_RS19730 -1.7 -3.6 1-phosphofructokinase compare
BWI76_RS06185 -1.6 -8.5 shikimate kinase II compare
BWI76_RS06595 -1.6 -2.7 hypothetical protein compare
BWI76_RS25425 -1.6 -2.0 arginine repressor compare
BWI76_RS00765 -1.6 -4.4 DNA-binding transcriptional regulator CytR compare
BWI76_RS05450 -1.6 -1.7 ribonuclease HI compare
BWI76_RS25960 -1.6 -3.8 NUDIX hydrolase compare
BWI76_RS17720 -1.6 -1.7 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS01680 -1.6 -3.9 transcriptional regulator IclR compare
BWI76_RS21370 -1.5 -2.1 ATP-dependent RNA helicase SrmB compare
BWI76_RS00965 -1.5 -1.4 acetolactate synthase 2 small subunit compare
BWI76_RS06490 -1.5 -4.8 cytochrome ubiquinol oxidase subunit I compare
BWI76_RS18165 -1.5 -2.2 NUDIX pyrophosphatase compare
BWI76_RS22085 -1.5 -2.7 L-valine transporter subunit YgaH compare
BWI76_RS05005 -1.5 -2.8 polynucleotide adenylyltransferase compare


Specific Phenotypes

For 20 genes in this experiment

For carbon source D,L-Malic Acid in Klebsiella michiganensis M5al

For carbon source D,L-Malic Acid across organisms