Experiment set5IT011 for Pseudomonas fluorescens FW300-N2E3

Compare to:

casamino acids carbon source

200 most important genes:

  gene name fitness t score description  
AO353_07230 -4.2 -16.0 anthranilate synthase compare
AO353_07210 -4.0 -5.5 indole-3-glycerol-phosphate synthase compare
AO353_00430 -3.8 -5.7 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_07215 -3.7 -8.2 anthranilate phosphoribosyltransferase compare
AO353_20665 -3.6 -12.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_16530 -3.5 -2.5 ribonuclease HII compare
AO353_07220 -3.4 -9.5 anthranilate synthase compare
AO353_07520 -3.3 -14.8 8-amino-7-oxononanoate synthase compare
AO353_07525 -3.2 -15.5 biotin synthase compare
AO353_07515 -3.1 -3.0 transporter compare
AO353_07510 -3.0 -11.3 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_10710 -3.0 -5.3 tryptophan synthase subunit beta compare
AO353_07505 -3.0 -10.2 dethiobiotin synthetase compare
AO353_03795 -2.9 -5.2 fumarate hydratase compare
AO353_12115 -2.9 -3.4 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_08045 -2.6 -13.8 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_09745 -2.5 -2.8 hypothetical protein compare
AO353_14595 -2.5 -10.4 carbonate dehydratase compare
AO353_00825 -2.4 -5.1 porin compare
AO353_02685 -2.3 -4.6 phosphoribosylglycinamide formyltransferase compare
AO353_16940 -2.3 -6.6 deoxycytidine triphosphate deaminase compare
AO353_15560 -2.2 -4.0 Maleylacetoacetate isomerase (EC 5.2.1.2) (from data) compare
AO353_02250 -2.2 -3.9 chorismate synthase compare
AO353_12500 -2.2 -2.5 shikimate kinase compare
AO353_21625 -2.1 -3.0 Fe/S biogenesis protein NfuA compare
AO353_14400 -2.0 -5.0 Fis family transcriptional regulator compare
AO353_10705 -1.9 -4.7 tryptophan synthase subunit alpha compare
AO353_03590 -1.9 -4.1 crossover junction endodeoxyribonuclease RuvC compare
AO353_08685 -1.8 -7.5 N-acetylglutamate synthase compare
AO353_10320 -1.8 -2.2 hypothetical protein compare
AO353_19280 -1.7 -2.6 hypothetical protein compare
AO353_14740 -1.7 -4.2 GTP-binding protein compare
AO353_15185 -1.7 -4.6 ATPase compare
AO353_01375 -1.7 -5.8 phosphate acyltransferase compare
AO353_11750 -1.7 -2.8 ATPase compare
AO353_22800 -1.7 -3.4 sulfite reductase compare
AO353_15555 -1.6 -4.5 fumarylacetoacetase compare
AO353_14485 -1.6 -1.7 pseudouridine synthase compare
AO353_02940 -1.6 -3.5 DNA-binding protein compare
AO353_05520 -1.6 -4.5 nicotinate-nucleotide pyrophosphorylase compare
AO353_14370 -1.5 -5.4 glucose-6-phosphate isomerase compare
AO353_04220 -1.5 -4.6 chemotaxis protein CheY compare
AO353_13070 -1.5 -6.5 phosphoserine phosphatase compare
AO353_13100 -1.5 -1.3 GTPase RsgA compare
AO353_09240 -1.5 -3.2 acetylglutamate kinase compare
AO353_18325 -1.5 -2.6 hypothetical protein compare
AO353_06050 -1.4 -6.1 exodeoxyribonuclease V subunit gamma compare
AO353_07075 -1.4 -3.8 elongation factor Tu compare
AO353_07155 -1.4 -5.8 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_05690 -1.4 -3.6 SsrA-binding protein compare
AO353_15725 -1.4 -4.3 hypothetical protein compare
AO353_20565 -1.4 -0.9 tRNA-Ala compare
AO353_04055 -1.4 -1.1 methionine--tRNA ligase compare
AO353_19145 -1.4 -3.5 protease HtpX compare
AO353_13685 -1.3 -3.7 3-dehydroquinate dehydratase compare
AO353_13140 -1.3 -4.8 tRNA dimethylallyltransferase compare
AO353_11165 -1.3 -7.1 hypothetical protein compare
AO353_22810 -1.3 -1.5 hypothetical protein compare
AO353_10455 -1.3 -1.7 tRNA modification GTPase MnmE compare
AO353_20170 -1.2 -4.3 trigger factor compare
AO353_18540 -1.2 -2.2 pseudouridine synthase compare
AO353_14150 -1.2 -1.7 peptidylprolyl isomerase compare
AO353_27650 -1.2 -4.1 cell division protein FtsK compare
AO353_00460 -1.2 -2.7 TetR family transcriptional regulator compare
AO353_08265 -1.2 -4.2 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_27720 -1.2 -3.1 cupin compare
AO353_02000 -1.2 -3.2 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_02075 -1.1 -6.7 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_03660 -1.1 -2.7 hypothetical protein compare
AO353_09000 -1.1 -3.7 argininosuccinate lyase compare
AO353_03615 -1.1 -2.8 cold-shock protein compare
AO353_29215 -1.1 -2.1 alpha/beta hydrolase compare
AO353_06045 -1.1 -4.8 exodeoxyribonuclease V subunit beta compare
AO353_07355 -1.1 -4.7 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_23285 -1.1 -2.3 hypothetical protein compare
AO353_04500 -1.1 -1.6 DNA repair protein RecO compare
AO353_04565 -1.1 -3.9 nucleoid-associated protein compare
AO353_14775 -1.1 -3.8 hypothetical protein compare
AO353_00495 -1.1 -1.6 DNA topoisomerase I compare
AO353_23450 -1.1 -3.0 LysR family transcriptional regulator compare
AO353_06100 -1.0 -1.4 thymidylate synthase compare
AO353_12460 -1.0 -4.8 malate dehydrogenase compare
AO353_02005 -1.0 -1.6 hypothetical protein compare
AO353_03525 -1.0 -4.9 quinolinate synthase A compare
AO353_19760 -1.0 -1.9 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
AO353_12930 -1.0 -1.8 GlcNAc-PI de-N-acetylase compare
AO353_02195 -1.0 -3.3 spermidine synthase compare
AO353_00750 -1.0 -2.1 GntR family transcriptional regulator compare
AO353_01220 -1.0 -2.3 hypothetical protein compare
AO353_14420 -1.0 -2.9 molecular chaperone DnaK compare
AO353_14395 -1.0 -2.9 poly(A) polymerase compare
AO353_11770 -1.0 -1.5 molecular chaperone Hsp33 compare
AO353_08510 -1.0 -3.2 3-phosphoglycerate dehydrogenase compare
AO353_10670 -1.0 -3.5 shikimate dehydrogenase compare
AO353_18715 -1.0 -0.8 histidine kinase compare
AO353_13245 -1.0 -4.5 hypothetical protein compare
AO353_09890 -1.0 -3.2 phosphate ABC transporter ATP-binding protein compare
AO353_17640 -1.0 -1.8 serine peptidase compare
AO353_27575 -1.0 -1.7 hypothetical protein compare
AO353_26830 -1.0 -2.7 histidine kinase compare
AO353_03830 -1.0 -2.3 antibiotic biosynthesis monooxygenase compare
AO353_24130 -1.0 -2.1 hypothetical protein compare
AO353_10985 -1.0 -1.1 hypothetical protein compare
AO353_18335 -1.0 -2.4 hypothetical protein compare
AO353_16375 -1.0 -2.1 hypothetical protein compare
AO353_14940 -0.9 -1.8 malate:quinone oxidoreductase compare
AO353_15480 -0.9 -1.9 hypothetical protein compare
AO353_11530 -0.9 -4.7 diguanylate cyclase compare
AO353_00890 -0.9 -3.6 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
AO353_04105 -0.9 -4.3 argininosuccinate synthase compare
AO353_15730 -0.9 -2.2 hypothetical protein compare
AO353_15785 -0.9 -4.6 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
AO353_20340 -0.9 -2.4 gamma-carboxygeranoyl-CoA hydratase compare
AO353_03585 -0.9 -1.9 ATP-dependent DNA helicase RuvA compare
AO353_17165 -0.9 -2.4 ATP-dependent helicase compare
AO353_26650 -0.9 -2.8 dihydrolipoamide dehydrogenase compare
AO353_22375 -0.9 -2.7 cytochrome c-550 PedF compare
AO353_10890 -0.9 -2.8 methionine ABC transporter ATP-binding protein compare
AO353_20335 -0.9 -3.2 3-methylcrotonyl-CoA carboxylase compare
AO353_12625 -0.9 -2.8 hypothetical protein compare
AO353_11775 -0.9 -3.5 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_06850 -0.9 -3.1 MFS transporter compare
AO353_03580 -0.8 -2.2 ATP-dependent DNA helicase RuvB compare
AO353_13225 -0.8 -2.2 50S ribosomal protein L9 compare
AO353_01685 -0.8 -1.5 hypothetical protein compare
AO353_13160 -0.8 -1.5 membrane protease HflC compare
AO353_27415 -0.8 -1.4 hypothetical protein compare
AO353_23315 -0.8 -2.6 hypothetical protein compare
AO353_21350 -0.8 -2.5 methylmalonate-semialdehyde dehydrogenase compare
AO353_00810 -0.8 -2.4 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) compare
AO353_18305 -0.8 -2.1 RNA helicase compare
AO353_21400 -0.8 -1.4 conjugal transfer protein TraR compare
AO353_24275 -0.8 -1.3 transcriptional regulator compare
AO353_27185 -0.8 -2.0 hypothetical protein compare
AO353_13640 -0.8 -2.8 histidine kinase compare
AO353_21445 -0.8 -1.8 cation:proton antiporter compare
AO353_17005 -0.8 -1.6 hypothetical protein compare
AO353_03670 -0.8 -2.7 ornithine acetyltransferase compare
AO353_12105 -0.8 -3.2 peptidase S41 compare
AO353_17410 -0.8 -1.4 arylsulfate sulfotransferase compare
AO353_10430 -0.8 -1.6 chromosome partitioning protein ParB compare
AO353_14405 -0.8 -4.9 ATPase compare
AO353_28555 -0.8 -1.4 LysR family transcriptional regulator compare
AO353_03935 -0.8 -2.4 fructose-bisphosphate aldolase compare
AO353_02970 -0.8 -2.3 carbon storage regulator compare
AO353_03710 -0.8 -1.8 formyltetrahydrofolate deformylase compare
AO353_28060 -0.8 -3.3 hypothetical protein compare
AO353_26370 -0.8 -1.6 hypothetical protein compare
AO353_08115 -0.8 -3.0 energy transducer TonB compare
AO353_08060 -0.8 -1.1 hypothetical protein compare
AO353_16350 -0.8 -1.6 SAM-dependent methyltransferase compare
AO353_03715 -0.8 -1.5 H-NS histone compare
AO353_19090 -0.7 -1.2 MarR family transcriptional regulator compare
AO353_22215 -0.7 -2.0 hypothetical protein compare
AO353_04520 -0.7 -2.8 elongation factor 4 compare
AO353_08620 -0.7 -1.3 hypothetical protein compare
AO353_04925 -0.7 -3.0 aldolase compare
AO353_14435 -0.7 -1.8 Rieske (2Fe-2S) protein compare
AO353_01675 -0.7 -3.2 transcriptional regulator compare
AO353_05895 -0.7 -1.9 RpiR family transcriptional regulator compare
AO353_24190 -0.7 -1.6 hypothetical protein compare
AO353_05740 -0.7 -2.3 hypothetical protein compare
AO353_09155 -0.7 -3.1 amino acid dehydrogenase compare
AO353_19295 -0.7 -1.3 hypothetical protein compare
AO353_04155 -0.7 -4.5 ornithine carbamoyltransferase compare
AO353_00540 -0.7 -1.8 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_22220 -0.7 -2.4 copper resistance protein CopC compare
AO353_10715 -0.7 -2.2 LysR family transcriptional regulator compare
AO353_16495 -0.7 -3.3 zinc metallopeptidase RseP compare
AO353_01770 -0.7 -2.5 pirin compare
AO353_12940 -0.7 -3.3 glycosyl transferase compare
AO353_25870 -0.7 -2.0 peptide ABC transporter ATP-binding protein compare
AO353_05420 -0.7 -1.2 peptide chain release factor 3 compare
AO353_03515 -0.7 -1.3 cold-shock protein compare
AO353_18285 -0.7 -1.8 3-phosphoglycerate kinase compare
AO353_20345 -0.7 -3.5 methylcrotonoyl-CoA carboxylase compare
AO353_10055 -0.7 -4.3 DNA helicase II compare
AO353_18435 -0.7 -2.9 MarR family transcriptional regulator compare
AO353_01615 -0.7 -2.6 pilus assembly protein PilA compare
AO353_29340 -0.7 -1.2 transporter compare
AO353_06040 -0.7 -1.8 exodeoxyribonuclease V subunit alpha compare
AO353_02720 -0.7 -2.5 cysteine synthase compare
AO353_06155 -0.7 -3.6 copper-transporting ATPase compare
AO353_18525 -0.7 -2.5 hypothetical protein compare
AO353_08980 -0.7 -1.7 heme biosynthesis operon protein HemX compare
AO353_27855 -0.7 -1.5 MarR family transcriptional regulator compare
AO353_14380 -0.7 -2.5 pantoate--beta-alanine ligase compare
AO353_10510 -0.7 -1.1 benzoate transporter compare
AO353_10435 -0.7 -3.3 chromosome partitioning protein compare
AO353_26950 -0.7 -2.0 hypothetical protein compare
AO353_24440 -0.7 -1.3 reactive intermediate/imine deaminase compare
AO353_19310 -0.7 -1.1 enoyl-CoA hydratase compare
AO353_08100 -0.7 -2.0 chemotaxis protein CheY compare
AO353_06480 -0.7 -1.2 50S rRNA methyltransferase compare
AO353_04930 -0.7 -1.7 flavodoxin compare
AO353_08110 -0.7 -2.7 glutathione synthetase compare
AO353_12130 -0.7 -2.0 preprotein translocase subunit SecB compare
AO353_04355 -0.7 -0.9 homoserine dehydrogenase compare
AO353_20185 -0.7 -2.8 DNA-binding protein compare
AO353_08470 -0.6 -2.1 RNA pyrophosphohydrolase compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source casamino acids in Pseudomonas fluorescens FW300-N2E3

For carbon source casamino acids across organisms