Experiment set5IT011 for Pseudomonas fluorescens FW300-N2E3

Compare to:

casamino acids carbon source

200 most detrimental genes:

  gene name fitness t score description  
AO353_04200 +1.3 10.0 TetR family transcriptional regulator compare
AO353_06710 +1.3 3.2 riboflavin synthase subunit alpha compare
AO353_07645 +1.3 2.0 sarcosine oxidase subunit gamma compare
AO353_09660 +1.1 2.2 hypothetical protein compare
AO353_19750 +1.1 3.1 diaminopimelate epimerase compare
AO353_27995 +1.0 4.1 RpiR family transcriptional regulator compare
AO353_09720 +0.9 2.0 hypothetical protein compare
AO353_01595 +0.9 1.9 Flp pilus assembly protein CpaB compare
AO353_00185 +0.9 2.0 phage tail protein compare
AO353_03020 +0.9 5.1 arginine N-succinyltransferase compare
AO353_26525 +0.9 2.7 hypothetical protein compare
AO353_05385 +0.8 5.9 porin compare
AO353_09030 +0.8 1.8 iron donor protein CyaY compare
AO353_05390 +0.8 5.3 peptide ABC transporter substrate-binding protein compare
AO353_22150 +0.8 2.2 iron transporter compare
AO353_27025 +0.8 3.1 2-nitropropane dioxygenase compare
AO353_20265 +0.8 2.6 spore coat protein compare
AO353_22735 +0.8 1.8 hypothetical protein compare
AO353_18130 +0.8 2.1 hypothetical protein compare
AO353_16835 +0.8 2.4 LuxR family transcriptional regulator compare
AO353_03250 +0.8 1.4 gluconokinase compare
AO353_22025 +0.8 2.1 iron-sulfur cluster repair di-iron protein compare
AO353_28725 +0.8 2.6 hypothetical protein compare
AO353_19070 +0.8 2.2 hypothetical protein compare
AO353_24605 +0.8 1.9 hypothetical protein compare
AO353_21110 +0.8 1.7 hypothetical protein compare
AO353_12650 +0.8 1.3 hypothetical protein compare
AO353_24740 +0.8 2.3 hypothetical protein compare
AO353_19490 +0.8 2.8 Fis family transcriptional regulator compare
AO353_04650 +0.8 2.9 molybdenum cofactor biosynthesis protein MoaE compare
AO353_05280 +0.8 2.3 4-carboxymuconolactone decarboxylase compare
AO353_27935 +0.7 2.1 succinyl-CoA--3-ketoacid-CoA transferase compare
AO353_20840 +0.7 2.4 ribose pyranase compare
AO353_11195 +0.7 6.0 hemolysin secretion protein D compare
AO353_11180 +0.7 6.5 large adhesive protein compare
AO353_07445 +0.7 1.9 pyrroloquinoline quinone biosynthesis protein PqqD compare
AO353_23400 +0.7 1.7 hypothetical protein compare
AO353_26315 +0.7 2.8 hypothetical protein compare
AO353_04475 +0.7 2.5 hypothetical protein compare
AO353_22200 +0.7 3.3 metal-binding protein compare
AO353_00195 +0.7 1.8 virion morphogenesis protein compare
AO353_12540 +0.6 1.5 hypothetical protein compare
AO353_04970 +0.6 1.8 cell division protein DedD compare
AO353_23015 +0.6 2.8 histidine kinase compare
AO353_11720 +0.6 1.6 taurine transporter ATP-binding subunit compare
AO353_24120 +0.6 1.6 hypothetical protein compare
AO353_12580 +0.6 2.0 type II secretory protein PulK compare
AO353_11470 +0.6 2.6 hypothetical protein compare
AO353_11190 +0.6 4.7 ABC transporter compare
AO353_11185 +0.6 4.6 channel protein TolC compare
AO353_23930 +0.6 2.8 chemotaxis protein CheY compare
AO353_10730 +0.6 1.3 hypothetical protein compare
AO353_20495 +0.6 1.8 NUDIX hydrolase compare
AO353_19020 +0.6 1.1 hypothetical protein compare
AO353_03450 +0.6 2.3 heme oxygenase compare
AO353_23910 +0.6 1.9 response regulator compare
AO353_16425 +0.6 1.1 Fe-S metabolism protein SufE compare
AO353_26795 +0.6 2.3 NAD-dependent deacetylase compare
AO353_26935 +0.6 1.1 LysR family transcriptional regulator compare
AO353_28930 +0.6 1.1 hypothetical protein compare
AO353_02465 +0.6 1.0 hypothetical protein compare
AO353_00510 +0.6 3.2 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_21325 +0.6 3.2 patatin compare
AO353_28380 +0.6 1.9 GntR family transcriptional regulator compare
AO353_08875 +0.6 1.8 amino acid ABC transporter ATP-binding protein compare
AO353_05240 +0.6 1.7 rod shape-determining protein MreD compare
AO353_21410 +0.6 1.4 hypothetical protein compare
AO353_21990 +0.6 1.9 cytochrome C compare
AO353_02975 +0.6 1.7 aspartate kinase compare
AO353_05880 +0.6 1.6 plasmid stabilization protein compare
AO353_05145 +0.6 3.2 ABC transporter permease compare
AO353_24260 +0.6 1.1 hypothetical protein compare
AO353_23415 +0.6 2.0 lysine transporter LysE compare
AO353_14650 +0.6 2.3 UDP-N-acetylmuramate--alanine ligase compare
AO353_24340 +0.6 0.7 TetR family transcriptional regulator compare
AO353_22985 +0.6 1.4 hypothetical protein compare
AO353_11920 +0.6 1.1 hypothetical protein compare
AO353_11940 +0.5 1.4 hypothetical protein compare
AO353_00330 +0.5 3.6 hypothetical protein compare
AO353_11780 +0.5 1.4 hypothetical protein compare
AO353_23785 +0.5 1.2 hypothetical protein compare
AO353_14955 +0.5 1.8 hypothetical protein compare
AO353_15545 +0.5 2.1 IclR family transcriptional regulator compare
AO353_02875 +0.5 3.5 flagellar biosynthesis protein FlgA compare
AO353_23440 +0.5 1.7 hypothetical protein compare
AO353_20140 +0.5 2.0 hypothetical protein compare
AO353_03015 +0.5 2.2 arginine N-succinyltransferase compare
AO353_13480 +0.5 2.2 chaperone modulatory protein CbpM compare
AO353_21830 +0.5 4.3 chemotaxis protein CheY compare
AO353_17965 +0.5 1.5 hypothetical protein compare
AO353_16155 +0.5 1.8 antibiotic biosynthesis monooxygenase compare
AO353_03405 +0.5 2.9 histidine kinase compare
AO353_25450 +0.5 1.2 cyanate hydratase compare
AO353_24595 +0.5 1.2 hypothetical protein compare
AO353_09945 +0.5 2.2 LysR family transcriptional regulator compare
AO353_28000 +0.5 2.4 branched-chain amino acid ABC transporter compare
AO353_11695 +0.5 2.0 hypothetical protein compare
AO353_07790 +0.5 1.8 ABC transporter for Carnitine, ATPase component (from data) compare
AO353_04830 +0.5 2.5 required for acetate efflux, together with NodT, MFP and FUSC proteins (AO353_04840, AO353_04825, and AO353_04835) (from data) compare
AO353_18135 +0.5 1.3 hypothetical protein compare
AO353_06010 +0.5 3.0 diguanylate cyclase compare
AO353_03025 +0.5 2.4 acetylornithine aminotransferase compare
AO353_04320 +0.5 2.2 single-stranded-DNA-specific exonuclease RecJ compare
AO353_04325 +0.5 1.1 hypothetical protein compare
AO353_24400 +0.5 2.5 ACP phosphodiesterase compare
AO353_06745 +0.5 0.9 zinc-binding protein compare
AO353_12990 +0.5 1.7 multidrug DMT transporter compare
AO353_09045 +0.5 1.4 hypothetical protein compare
AO353_20255 +0.5 1.7 transcriptional regulator compare
AO353_00020 +0.5 2.6 delta-aminolevulinic acid dehydratase compare
AO353_13600 +0.5 1.3 precorrin-6Y C5,15-methyltransferase compare
AO353_19565 +0.5 1.8 vanillate O-demethylase oxidoreductase VanB compare
AO353_22915 +0.5 2.0 oxidoreductase compare
AO353_04585 +0.5 1.7 ketosteroid isomerase compare
AO353_07270 +0.5 1.1 transcriptional regulator compare
AO353_02735 +0.5 4.3 chemotaxis protein CheY compare
AO353_13370 +0.5 2.4 hypothetical protein compare
AO353_08435 +0.5 1.9 phosphatidylglycerophosphatase compare
AO353_16615 +0.5 3.7 RNA polymerase sigma factor RpoS compare
AO353_24735 +0.5 2.5 hypothetical protein compare
AO353_07830 +0.5 2.2 dimethylmenaquinone methyltransferase compare
AO353_08690 +0.5 2.4 acetylornithine deacetylase compare
AO353_13395 +0.5 1.2 protein hupE compare
AO353_22645 +0.5 1.0 hypothetical protein compare
AO353_14935 +0.5 1.3 aminopeptidase compare
AO353_01750 +0.5 2.7 histidine kinase compare
AO353_15565 +0.5 1.9 hypothetical protein compare
AO353_02885 +0.5 0.9 flagellar biosynthesis protein FlgN compare
AO353_11170 +0.5 3.3 hypothetical protein compare
AO353_18210 +0.5 2.5 hypothetical protein compare
AO353_17680 +0.5 1.9 MBL fold metallo-hydrolase compare
AO353_10095 +0.5 2.4 cobalamin biosynthesis protein CobW compare
AO353_28565 +0.5 0.9 hypothetical protein compare
AO353_14910 +0.5 1.9 pyridine nucleotide-disulfide oxidoreductase compare
AO353_23430 +0.5 1.2 (2Fe-2S)-binding protein compare
AO353_09015 +0.5 1.3 DNA-binding protein compare
AO353_09560 +0.5 0.5 type VI secretion protein compare
AO353_02280 +0.5 1.2 DNA mismatch repair protein MutS compare
AO353_01165 +0.5 2.1 cytochrome C compare
AO353_28670 +0.5 1.5 hypothetical protein compare
AO353_16755 +0.4 1.8 hydroxyacid dehydrogenase compare
AO353_26335 +0.4 1.4 hypothetical protein compare
AO353_00580 +0.4 2.9 alpha/beta hydrolase compare
AO353_03770 +0.4 1.7 hypothetical protein compare
AO353_00955 +0.4 1.0 cytotoxic translational repressor of toxin-antitoxin stability system compare
AO353_01915 +0.4 1.1 GlcG protein compare
AO353_00870 +0.4 2.0 hypothetical protein compare
AO353_26100 +0.4 1.0 lysozyme compare
AO353_06355 +0.4 1.4 thiamine-phosphate pyrophosphorylase compare
AO353_23575 +0.4 1.8 hypothetical protein compare
AO353_19765 +0.4 2.8 hypothetical protein compare
AO353_17100 +0.4 1.0 hypothetical protein compare
AO353_21255 +0.4 1.5 ABC transporter ATP-binding protein compare
AO353_17785 +0.4 1.4 hypothetical protein compare
AO353_02330 +0.4 1.2 allantoicase compare
AO353_10805 +0.4 1.1 hypothetical protein compare
AO353_14930 +0.4 1.3 GntR family transcriptional regulator compare
AO353_07700 +0.4 1.4 electron transfer flavoprotein subunit alpha compare
AO353_20585 +0.4 1.4 TetR family transcriptional regulator compare
AO353_15885 +0.4 1.8 Cro/Cl family transcriptional regulator compare
AO353_13520 +0.4 1.9 urease accessory protein UreD compare
AO353_19695 +0.4 2.5 AAA family ATPase compare
AO353_25035 +0.4 2.0 integrase compare
AO353_18655 +0.4 1.6 flagellar assembly protein FliT compare
AO353_28700 +0.4 1.1 hypothetical protein compare
AO353_25050 +0.4 1.5 AraC family transcriptional regulator compare
AO353_29365 +0.4 0.8 paraquat-inducible protein A compare
AO353_07820 +0.4 2.4 branched-chain amino acid ABC transporter permease compare
AO353_03110 +0.4 1.6 hydrolase compare
AO353_26670 +0.4 2.1 ArsR family transcriptional regulator compare
AO353_05625 +0.4 0.8 transcription elongation factor GreA compare
AO353_29145 +0.4 1.5 HxlR family transcriptional regulator compare
AO353_02570 +0.4 1.5 hypothetical protein compare
AO353_03420 +0.4 1.7 phosphogluconate dehydratase compare
AO353_15160 +0.4 2.5 MBL fold metallo-hydrolase compare
AO353_28200 +0.4 1.2 ribosomal protein S3AE compare
AO353_00505 +0.4 1.6 3-ketoacyl-CoA thiolase compare
AO353_19050 +0.4 1.5 5'-nucleotidase compare
AO353_01310 +0.4 1.7 radical SAM protein compare
AO353_21890 +0.4 2.1 molybdenum cofactor biosynthesis protein MoaC compare
AO353_26385 +0.4 1.4 hypothetical protein compare
AO353_15535 +0.4 1.9 hypothetical protein compare
AO353_28925 +0.4 1.8 hypothetical protein compare
AO353_02085 +0.4 2.1 methylthioribose-1-phosphate isomerase compare
AO353_21100 +0.4 1.2 DNA-binding protein compare
AO353_17875 +0.4 2.0 hypothetical protein compare
AO353_01800 +0.4 1.7 hypothetical protein compare
AO353_28815 +0.4 1.1 hypothetical protein compare
AO353_18600 +0.4 1.8 flagellar basal-body rod protein FlgG compare
AO353_27010 +0.4 0.9 alpha-ketoglutarate-dependent dioxygenase compare
AO353_13530 +0.4 1.5 ABC transporter ATP-binding protein compare
AO353_23155 +0.4 1.5 IclR family transcriptional regulator compare
AO353_00115 +0.4 0.6 hypothetical protein compare
AO353_15005 +0.4 1.7 lysine transporter LysE compare
AO353_18945 +0.4 1.6 hypothetical protein compare
AO353_24535 +0.4 1.0 hypothetical protein compare
AO353_25420 +0.4 1.8 spermidine/putrescine ABC transporter ATP-binding protein compare
AO353_10000 +0.4 2.0 GNAT family acetyltransferase compare
AO353_16665 +0.4 1.7 phage tail protein compare
AO353_02695 +0.4 2.0 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source casamino acids in Pseudomonas fluorescens FW300-N2E3

For carbon source casamino acids across organisms