Experiment set5IT011 for Pseudomonas fluorescens FW300-N1B4

Compare to:

Sodium nitrate nitrogen source

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_1610 -3.7 -4.9 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf1N1B4_1307 -3.2 -3.0 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_2547 -3.2 -2.2 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_1611 -3.2 -6.0 Nitrogen regulation protein NR(I) compare
Pf1N1B4_2338 -3.2 -6.3 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_2880 -3.1 -11.3 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_1624 -3.1 -7.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_5665 -3.1 -5.6 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_236 -3.1 -3.7 Molybdenum cofactor biosynthesis protein MoaB compare
Pf1N1B4_6 -3.0 -2.9 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_1627 -3.0 -4.4 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_2112 -3.0 -13.2 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_2491 -2.9 -5.2 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf1N1B4_327 -2.9 -3.9 hypothetical protein compare
Pf1N1B4_5666 -2.9 -3.5 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_15 -2.9 -2.7 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_1534 -2.8 -16.0 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_2303 -2.8 -12.2 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_1831 -2.8 -10.2 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_1434 -2.8 -8.9 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_2010 -2.7 -5.5 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf1N1B4_3506 -2.7 -7.1 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_12 -2.7 -7.0 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_418 -2.7 -9.0 Molybdenum cofactor biosynthesis protein MoaA compare
Pf1N1B4_1408 -2.6 -4.6 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_58 -2.6 -6.5 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_2549 -2.6 -8.4 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_2384 -2.6 -10.4 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_1626 -2.5 -7.5 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_4065 -2.5 -8.0 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_3697 -2.5 -8.9 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf1N1B4_2545 -2.4 -10.7 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_3812 -2.4 -8.8 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_1533 -2.4 -5.8 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_1830 -2.4 -7.9 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_2879 -2.4 -6.3 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_2009 -2.4 -4.7 LysR family transcriptional regulator PA5437 compare
Pf1N1B4_1067 -2.4 -5.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_847 -2.4 -8.0 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_742 -2.4 -7.0 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_2858 -2.3 -9.2 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_2548 -2.3 -5.1 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_3081 -2.3 -17.4 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_2272 -2.3 -2.9 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_2377 -2.2 -5.8 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf1N1B4_350 -2.2 -6.7 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_626 -2.2 -8.0 Quinolinate synthetase (EC 2.5.1.72) compare
Pf1N1B4_2489 -2.2 -5.7 Biotin synthesis protein BioH compare
Pf1N1B4_1565 -2.2 -3.8 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_1625 -2.2 -4.5 FIG00956267: hypothetical protein compare
Pf1N1B4_2011 -2.2 -8.3 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf1N1B4_2282 -2.2 -7.5 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_2878 -2.1 -6.6 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_3835 -2.1 -12.7 Nitrate reductase (EC 1.7.99.4) (from data) conserved
Pf1N1B4_3518 -2.1 -3.8 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_1315 -2.1 -7.0 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_2284 -2.1 -5.0 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf1N1B4_1153 -2.0 -3.8 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf1N1B4_2337 -2.0 -5.0 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_2490 -2.0 -6.1 Biotin synthesis protein BioC compare
Pf1N1B4_6041 -2.0 -3.6 Carbon storage regulator compare
Pf1N1B4_3837 -2.0 -9.6 Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4) conserved
Pf1N1B4_3508 -1.9 -5.3 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf1N1B4_2225 -1.9 -10.0 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Pf1N1B4_1906 -1.9 -3.7 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_5224 -1.9 -4.3 tRNA-Arg-CCT compare
Pf1N1B4_235 -1.9 -5.9 Molybdopterin biosynthesis protein MoeA compare
Pf1N1B4_5560 -1.9 -3.3 hypothetical protein compare
Pf1N1B4_2488 -1.9 -6.9 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf1N1B4_2487 -1.9 -6.8 Biotin synthase (EC 2.8.1.6) compare
Pf1N1B4_2280 -1.8 -7.4 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_974 -1.8 -3.8 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf1N1B4_1617 -1.8 -6.6 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_3833 -1.8 -8.2 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_5042 -1.7 -6.7 Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4) conserved
Pf1N1B4_2167 -1.7 -6.2 Ammonium transporter compare
Pf1N1B4_1057 -1.7 -3.1 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_1566 -1.7 -6.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_4603 -1.7 -3.1 hypothetical protein compare
Pf1N1B4_4960 -1.6 -3.2 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf1N1B4_3840 -1.6 -3.7 Response regulator NasT conserved
Pf1N1B4_5675 -1.6 -2.9 hypothetical protein compare
Pf1N1B4_407 -1.6 -2.4 ADP-ribosylglycohydrolase YegU (EC 3.2.-.-) compare
Pf1N1B4_4957 -1.6 -2.2 Transcriptional regulator, TetR family compare
Pf1N1B4_716 -1.6 -3.9 Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites compare
Pf1N1B4_4028 -1.6 -4.2 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_762 -1.6 -4.7 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_275 -1.5 -2.2 Organic hydroperoxide resistance transcriptional regulator compare
Pf1N1B4_2859 -1.5 -10.4 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf1N1B4_1584 -1.5 -2.3 Histidine ABC transporter, permease protein (TC 3.A.1) compare
Pf1N1B4_2208 -1.4 -5.7 Polyphosphate kinase (EC 2.7.4.1) compare
Pf1N1B4_1008 -1.4 -1.7 FIG006045: Sigma factor, ECF subfamily compare
Pf1N1B4_652 -1.4 -7.5 Sensory box histidine kinase compare
Pf1N1B4_2893 -1.4 -6.4 Carbonic anhydrase (EC 4.2.1.1) compare
Pf1N1B4_3710 -1.4 -4.5 L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) compare
Pf1N1B4_27 -1.4 -3.6 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf1N1B4_4476 -1.4 -3.4 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
Pf1N1B4_556 -1.4 -3.6 Gluconate permease compare
Pf1N1B4_4544 -1.3 -1.7 Uncharacterized protein ImpA compare
Pf1N1B4_197 -1.3 -2.4 FIG139991: Putative thiamine pyrophosphate-requiring enzyme compare
Pf1N1B4_3849 -1.3 -3.9 Transcriptional regulator, GntR family compare
Pf1N1B4_715 -1.3 -4.6 Iron-regulated protein A precursor compare
Pf1N1B4_1 -1.3 -2.0 Colicin V production protein compare
Pf1N1B4_430 -1.3 -2.2 hypothetical protein compare
Pf1N1B4_4839 -1.3 -2.2 lipoprotein compare
Pf1N1B4_4474 -1.3 -2.3 transcription regulator protein compare
Pf1N1B4_3445 -1.2 -3.1 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf1N1B4_1837 -1.2 -1.5 Osmotically inducible protein C compare
Pf1N1B4_4627 -1.2 -2.5 FIG00957600: hypothetical protein compare
Pf1N1B4_2209 -1.2 -6.3 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_5815 -1.2 -3.1 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) compare
Pf1N1B4_3152 -1.2 -4.5 LysR family transcriptional regulator PA3398 compare
Pf1N1B4_600 -1.2 -4.2 Glucokinase (EC 2.7.1.2) compare
Pf1N1B4_3588 -1.2 -2.4 N-Acetylneuraminate cytidylyltransferase (EC 2.7.7.43) compare
Pf1N1B4_890 -1.2 -2.4 DNA recombination and repair protein RecO compare
Pf1N1B4_4847 -1.2 -2.7 Various polyols ABC transporter, ATP-binding component compare
Pf1N1B4_4866 -1.1 -2.4 hypothetical protein compare
Pf1N1B4_683 -1.1 -3.1 Fumarate hydratase class I, aerobic (EC 4.2.1.2) compare
Pf1N1B4_718 -1.1 -4.6 outer membrane component of uptake system, probably for ferrous iron (from data) compare
Pf1N1B4_3839 -1.1 -3.9 Nitrate/nitrite transporter conserved
Pf1N1B4_678 -1.1 -5.1 Pyruvate kinase (EC 2.7.1.40) compare
Pf1N1B4_578 -1.1 -2.5 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_2912 -1.1 -1.8 GTP-binding and nucleic acid-binding protein YchF compare
Pf1N1B4_1389 -1.1 -1.9 Lysine decarboxylase family compare
Pf1N1B4_4035 -1.1 -1.7 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
Pf1N1B4_799 -1.1 -1.6 hypothetical protein compare
Pf1N1B4_1668 -1.1 -3.2 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf1N1B4_3685 -1.1 -3.0 Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) compare
Pf1N1B4_5688 -1.1 -3.7 hypothetical protein compare
Pf1N1B4_4107 -1.1 -1.8 Probable glutathione S-transferase (EC 2.5.1.18), YfcF homolog compare
Pf1N1B4_3466 -1.1 -1.9 FIG00955605: hypothetical protein compare
Pf1N1B4_4669 -1.1 -1.6 Heavy metal RND efflux outer membrane protein, CzcC family compare
Pf1N1B4_3498 -1.0 -1.8 FIG00953240: hypothetical protein compare
Pf1N1B4_6038 -1.0 -3.0 FIG00953874: hypothetical protein compare
Pf1N1B4_3524 -1.0 -2.6 FIG00955363: hypothetical protein compare
Pf1N1B4_2682 -1.0 -1.8 Antiholin-like protein LrgA compare
Pf1N1B4_201 -1.0 -1.8 ABC transporter in pyoverdin gene cluster, ATP-binding component compare
Pf1N1B4_2005 -1.0 -1.8 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_3751 -1.0 -1.3 FIG00953060: hypothetical protein compare
Pf1N1B4_4256 -1.0 -2.0 Probable transmembrane protein compare
Pf1N1B4_3386 -1.0 -2.8 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf1N1B4_237 -1.0 -1.3 Molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
Pf1N1B4_2850 -1.0 -4.2 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf1N1B4_4336 -1.0 -2.1 FMN-dependent NADH-azoreductase compare
Pf1N1B4_761 -1.0 -1.9 FIG00954879: hypothetical protein compare
Pf1N1B4_648 -1.0 -9.1 Outer membrane porin, OprD family compare
Pf1N1B4_3143 -1.0 -2.4 RecA protein compare
Pf1N1B4_3991 -1.0 -1.5 Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family compare
Pf1N1B4_4648 -1.0 -1.8 transcriptional regulator, MerR family compare
Pf1N1B4_2269 -1.0 -2.4 Purine nucleoside phosphorylase (EC 2.4.2.1) compare
Pf1N1B4_3241 -1.0 -1.4 hypothetical protein compare
Pf1N1B4_13 -1.0 -2.4 SAM-dependent methyltransferase YafE (UbiE paralog) compare
Pf1N1B4_3322 -1.0 -5.5 L-aspartate oxidase (EC 1.4.3.16) compare
Pf1N1B4_5005 -1.0 -2.4 LysR family transcriptional regulator STM2281 compare
Pf1N1B4_5823 -1.0 -1.5 Na(+) H(+) antiporter subunit C compare
Pf1N1B4_4205 -1.0 -2.7 Probable signal peptide protein compare
Pf1N1B4_5084 -1.0 -2.5 Capsular polysaccharide synthesis enzyme CpsD, exopolysaccharide synthesis compare
Pf1N1B4_5880 -1.0 -1.7 AttH component of AttEFGH ABC transport system compare
Pf1N1B4_446 -1.0 -2.7 Thymidylate kinase (EC 2.7.4.9) compare
Pf1N1B4_1279 -1.0 -1.7 Flp pilus assembly protein TadB compare
Pf1N1B4_967 -1.0 -1.7 hypothetical protein compare
Pf1N1B4_5904 -1.0 -2.0 FIG00955320: hypothetical protein compare
Pf1N1B4_3745 -1.0 -2.0 Thiamin ABC transporter, transmembrane component compare
Pf1N1B4_3443 -1.0 -2.1 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf1N1B4_932 -1.0 -1.8 FIG00963370: hypothetical protein compare
Pf1N1B4_1613 -1.0 -2.3 tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) compare
Pf1N1B4_5041 -1.0 -1.9 Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) compare
Pf1N1B4_3368 -1.0 -1.7 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf1N1B4_1870 -0.9 -1.9 Zinc ABC transporter, ATP-binding protein ZnuC compare
Pf1N1B4_211 -0.9 -6.5 Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase compare
Pf1N1B4_5018 -0.9 -1.7 FIG00962345: hypothetical protein compare
Pf1N1B4_381 -0.9 -1.8 hypothetical protein compare
Pf1N1B4_1535 -0.9 -2.0 hypothetical protein compare
Pf1N1B4_1003 -0.9 -2.0 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_126 -0.9 -1.8 Pirin compare
Pf1N1B4_2465 -0.9 -2.0 Two-component response regulator CreB compare
Pf1N1B4_2469 -0.9 -2.4 Glutathione S-transferase family protein compare
Pf1N1B4_2163 -0.9 -1.4 hypothetical protein compare
Pf1N1B4_63 -0.9 -1.9 Phosphonoacetaldehyde phosphonohydrolase-related protein compare
Pf1N1B4_1975 -0.9 -1.5 Transcriptional regulator, AsnC family compare
Pf1N1B4_4592 -0.9 -1.7 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) compare
Pf1N1B4_4403 -0.9 -1.6 NADH dehydrogenase (EC 1.6.99.3) compare
Pf1N1B4_2140 -0.9 -2.2 FIG00957579: hypothetical protein compare
Pf1N1B4_3905 -0.9 -2.5 FIG00953423: hypothetical protein compare
Pf1N1B4_5520 -0.9 -2.8 General secretion pathway protein E compare
Pf1N1B4_3451 -0.9 -1.8 Aspartokinase (EC 2.7.2.4) compare
Pf1N1B4_3328 -0.9 -1.0 Rhodanese-like domain protein compare
Pf1N1B4_5031 -0.9 -2.2 Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1) compare
Pf1N1B4_2008 -0.9 -4.7 Phosphogluconate repressor HexR, RpiR family compare
Pf1N1B4_4587 -0.9 -1.3 probable dioxygenase compare
Pf1N1B4_438 -0.9 -2.5 hypothetical protein compare
Pf1N1B4_4932 -0.9 -2.2 Tartrate dehydrogenase (EC 1.1.1.93) / Tartrate decarboxylase (EC 4.1.1.73) / D-malic enzyme (EC 1.1.1.83) compare
Pf1N1B4_5955 -0.9 -2.7 Permease of the major facilitator superfamily compare
Pf1N1B4_2949 -0.9 -1.4 FIG00956396: hypothetical protein compare
Pf1N1B4_5074 -0.8 -1.9 Gluconate permease compare
Pf1N1B4_5652 -0.8 -1.6 ChlI component of cobalt chelatase involved in B12 biosynthesis compare
Pf1N1B4_4485 -0.8 -0.9 membrane protein, putative compare
Pf1N1B4_5442 -0.8 -2.9 hypothetical protein compare
Pf1N1B4_1475 -0.8 -3.4 FIG00962376: hypothetical protein compare
Pf1N1B4_2037 -0.8 -2.1 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare


Specific Phenotypes

For 3 genes in this experiment

For nitrogen source Sodium nitrate in Pseudomonas fluorescens FW300-N1B4

For nitrogen source Sodium nitrate across organisms