Experiment set5IT011 for Methanococcus maripaludis S2

Compare to:

H2 deepwell acetate and casamino acid FREE

200 most important genes:

  gene name fitness t score description  
MMP_RS00515 -2.6 -1.2 DUF655 domain-containing protein compare
MMP_RS05555 -2.3 -2.1 DUF4040 domain-containing protein compare
MMP_RS02280 -2.3 -1.2 DUF211 domain-containing protein compare
MMP_RS01020 -2.2 -1.4 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS07630 -2.1 -1.9 ATP-binding cassette domain-containing protein compare
MMP_RS01385 -2.1 -0.8 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS03315 -2.0 -1.5 ferrous iron transport protein A compare
MMP_RS07600 -2.0 -3.0 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS03015 -2.0 -12.2 GTP 3' 8-cyclase MoaA compare
MMP_RS03600 -1.9 -2.2 triose-phosphate isomerase compare
MMP_RS02900 -1.9 -0.6 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS05515 -1.9 -7.3 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS01175 -1.9 -5.4 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS04605 -1.8 -5.4 cobalt ECF transporter T component CbiQ compare
MMP_RS00305 -1.8 -2.0 phosphoribosyl-ATP diphosphatase compare
MMP_RS01795 -1.8 -1.8 methanogenesis marker 6 protein compare
MMP_RS02010 -1.8 -8.2 PHP domain-containing protein compare
MMP_RS02240 -1.8 -4.1 methanogenesis marker 7 protein compare
MMP_RS06355 -1.7 -3.2 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS01005 -1.7 -1.6 riboflavin synthase compare
MMP_RS04615 -1.7 -4.6 PDGLE domain-containing protein compare
MMP_RS04775 -1.7 -3.0 adenosylhomocysteinase compare
MMP_RS02195 -1.6 -4.8 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS04620 -1.6 -10.7 cobalt transporter CbiM compare
MMP_RS06630 -1.6 -1.0 UPF0058 family protein compare
MMP_RS06350 -1.6 -6.5 HesA/MoeB/ThiF family protein compare
MMP_RS07845 -1.6 -2.9 LL-diaminopimelate aminotransferase compare
MMP_RS08320 -1.6 -6.3 molybdopterin molybdotransferase MoeA compare
MMP_RS05425 -1.6 -5.1 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS01830 -1.6 -1.6 tRNA-Val compare
MMP_RS01265 -1.6 -2.3 hypothetical protein compare
MMP_RS04500 -1.6 -10.8 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS08300 -1.5 -1.2 metal-sulfur cluster assembly factor compare
MMP_RS06295 -1.5 -6.7 methanogenesis marker 14 protein compare
MMP_RS07635 -1.5 -6.4 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS02355 -1.5 -2.3 30S ribosomal protein S27ae compare
MMP_RS06370 -1.5 -3.8 biotin synthase BioB compare
MMP_RS06925 -1.4 -2.4 ribonuclease VapC4 compare
MMP_RS05060 -1.4 -9.0 AAA family ATPase compare
MMP_RS02135 -1.4 -4.9 DUF5612 domain-containing protein compare
MMP_RS02885 -1.4 -9.6 molybdopterin biosynthesis protein compare
MMP_RS05090 -1.4 -8.2 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMP_RS05500 -1.4 -7.0 2-isopropylmalate synthase compare
MMP_RS07730 -1.4 -1.7 pyruvate synthase subunit beta compare
MMP_RS08330 -1.4 -5.6 NADH-quinone oxidoreductase subunit H compare
MMP_RS03450 -1.4 -2.1 glycine synthesis protein GlyXS (from data) compare
MMP_RS09020 -1.4 -1.3 hypothetical protein compare
MMP_RS07735 -1.4 -0.8 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS03960 -1.4 -0.7 hypothetical protein compare
MMP_RS05265 -1.4 -2.3 2-isopropylmalate synthase compare
MMP_RS02235 -1.4 -7.9 CBS domain-containing protein compare
MMP_RS06270 -1.3 -5.2 TIGR00300 family protein compare
MMP_RS06885 -1.3 -2.4 50S ribosome-binding GTPase compare
MMP_RS08095 -1.3 -4.7 dethiobiotin synthase compare
MMP_RS06105 -1.3 -7.0 hydrogenase maturation peptidase HycI compare
MMP_RS07575 -1.3 -3.6 RNA ligase partner protein compare
MMP_RS08350 -1.3 -1.0 hypothetical protein compare
MMP_RS06680 -1.3 -6.9 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS08745 -1.3 -5.1 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS06700 -1.3 -7.8 hypothetical protein compare
MMP_RS01220 -1.3 -6.7 hypothetical protein compare
MMP_RS05080 -1.3 -9.3 acetyl-CoA decarbonylase/synthase complex subunit delta compare
MMP_RS04215 -1.3 -5.5 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS05070 -1.2 -6.2 4Fe-4S dicluster domain-containing protein compare
MMP_RS00750 -1.2 -1.8 fumarate hydratase compare
MMP_RS05085 -1.2 -4.6 AAA family ATPase compare
MMP_RS07955 -1.2 -4.9 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS05075 -1.2 -9.3 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMP_RS02110 -1.2 -2.1 hypothetical protein compare
MMP_RS07345 -1.2 -3.5 glycine synthesis protein GlyXL (from data) compare
MMP_RS08720 -1.2 -1.3 4Fe-4S binding protein compare
MMP_RS03475 -1.2 -0.5 hypothetical protein compare
MMP_RS01225 -1.2 -4.0 DUF5379 domain-containing protein compare
MMP_RS06685 -1.2 -6.4 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS06400 -1.2 -1.5 4Fe-4S binding protein compare
MMP_RS01455 -1.2 -5.4 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS01755 -1.2 -1.2 DUF2097 domain-containing protein compare
MMP_RS06375 -1.2 -4.2 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS05100 -1.2 -9.8 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMP_RS03035 -1.2 -2.8 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS08105 -1.1 -4.9 6-carboxyhexanoate--CoA ligase compare
MMP_RS00120 -1.1 -3.4 LysR family transcriptional regulator compare
MMP_RS06340 -1.1 -5.2 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS05095 -1.1 -6.8 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMP_RS05540 -1.1 -3.6 hypothetical protein compare
MMP_RS00130 -1.1 -0.9 nickel-responsive transcriptional regulator NikR compare
MMP_RS07755 -1.1 -1.1 DUF555 domain-containing protein compare
MMP_RS06020 -1.1 -3.7 archaeoflavoprotein AfpA compare
MMP_RS08100 -1.1 -5.0 8-amino-7-oxononanoate synthase compare
MMP_RS07005 -1.1 -0.5 4Fe-4S binding protein compare
MMP_RS00685 -1.1 -3.1 2-phospho-L-lactate guanylyltransferase compare
MMP_RS04055 -1.1 -1.5 hypothetical protein compare
MMP_RS07525 -1.1 -6.6 4Fe-4S binding protein compare
MMP_RS06730 -1.1 -1.6 phosphopantothenate/pantothenate synthetase compare
MMP_RS06865 -1.1 -2.2 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS03445 -1.1 -0.9 methanogenesis marker 17 protein compare
MMP_RS05950 -1.1 -5.6 nickel-dependent hydrogenase large subunit compare
MMP_RS05055 -1.1 -7.8 DUF166 domain-containing protein compare
MMP_RS07355 -1.1 -0.8 transcription factor S compare
MMP_RS06895 -1.1 -1.3 selenocysteine-specific translation elongation factor compare
MMP_RS08650 -1.1 -2.6 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS06285 -1.0 -2.0 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS00300 -1.0 -0.5 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS05930 -1.0 -2.0 3-isopropylmalate dehydratase large subunit compare
MMP_RS04790 -1.0 -6.4 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS07545 -1.0 -1.0 HTH domain-containing protein compare
MMP_RS05065 -1.0 -4.2 CooT family nickel-binding protein compare
MMP_RS03390 -1.0 -4.7 malate dehydrogenase compare
MMP_RS07195 -1.0 -5.2 M20 family metallo-hydrolase compare
MMP_RS06860 -1.0 -1.7 4Fe-4S binding protein compare
MMP_RS03435 -1.0 -1.2 ketol-acid reductoisomerase compare
MMP_RS07185 -1.0 -7.1 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS07645 -1.0 -3.8 aldehyde dehydrogenase family protein compare
MMP_RS01610 -1.0 -2.1 hypothetical protein compare
MMP_RS08210 -1.0 -1.8 phosphatidylglycerophosphatase A compare
MMP_RS06705 -1.0 -3.9 formate/nitrite transporter family protein compare
MMP_RS08785 -1.0 -0.8 RNA-protein complex protein Nop10 compare
MMP_RS08165 -1.0 -1.4 phosphoglycerate dehydrogenase compare
MMP_RS04875 -1.0 -2.9 energy-converting hydrogenase B subunit P compare
MMP_RS06475 -1.0 -2.8 FAD-dependent oxidoreductase compare
MMP_RS03420 -1.0 -2.6 acetolactate synthase small subunit compare
MMP_RS06345 -0.9 -4.4 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS02800 -0.9 -2.8 nucleotidyltransferase domain-containing protein compare
MMP_RS00895 -0.9 -2.1 hypothetical protein compare
MMP_RS03155 -0.9 -4.5 precorrin-6A reductase compare
MMP_RS07200 -0.9 -3.6 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS02790 -0.9 -0.9 class III signal peptide-containing protein compare
MMP_RS01700 -0.9 -0.7 dihydroxy-acid dehydratase compare
MMP_RS08365 -0.9 -2.3 energy conserving hydrogenase EhbF compare
MMP_RS03250 -0.9 -1.9 MJ1244 family protein compare
MMP_RS08460 -0.9 -2.0 proteasome-activating nucleotidase compare
MMP_RS01325 -0.9 -1.4 dihydroneopterin aldolase family protein compare
MMP_RS08820 -0.9 -2.3 hypothetical protein compare
MMP_RS00315 -0.9 -3.0 Nif3-like dinuclear metal center hexameric protein compare
MMP_RS03145 -0.9 -3.8 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS01545 -0.9 -0.6 CBS domain-containing protein compare
MMP_RS03640 -0.9 -2.4 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS03700 -0.8 -4.9 sodium:proton antiporter compare
MMP_RS01500 -0.8 -1.1 CBS domain-containing protein compare
MMP_RS07445 -0.8 -4.1 helix-turn-helix domain-containing protein compare
MMP_RS07350 -0.8 -1.5 preprotein translocase subunit Sec61beta compare
MMP_RS07720 -0.8 -6.7 4Fe-4S binding protein compare
MMP_RS08355 -0.8 -2.6 Na(+)/H(+) antiporter subunit B compare
MMP_RS08360 -0.8 -3.5 hypothetical protein compare
MMP_RS00900 -0.8 -1.2 50S ribosomal protein L39e compare
MMP_RS08725 -0.8 -1.4 Ni/Fe hydrogenase subunit alpha compare
MMP_RS08790 -0.8 -1.2 translation initiation factor IF-2 subunit alpha compare
MMP_RS08335 -0.8 -3.2 NADH-quinone oxidoreductase subunit B family protein compare
MMP_RS00720 -0.8 -4.0 metal-dependent hydrolase compare
MMP_RS01260 -0.8 -3.0 HDIG domain-containing protein compare
MMP_RS00735 -0.8 -2.0 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS03025 -0.8 -3.4 molybdenum cofactor guanylyltransferase compare
MMP_RS04780 -0.8 -1.8 ribonuclease P compare
MMP_RS02875 -0.8 -4.1 chorismate pyruvate-lyase family protein compare
MMP_RS01195 -0.8 -0.9 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS04685 -0.8 -2.3 DUF126 domain-containing protein compare
MMP_RS05955 -0.8 -1.5 CoB--CoM heterodisulfide reductase subunit C compare
MMP_RS01805 -0.8 -1.9 NUDIX hydrolase compare
MMP_RS08715 -0.7 -1.2 formylmethanofuran dehydrogenase subunit B compare
MMP_RS05445 -0.7 -4.2 CoB--CoM heterodisulfide reductase subunit B compare
MMP_RS08345 -0.7 -4.8 4Fe-4S binding protein compare
MMP_RS01800 -0.7 -2.4 TIGR00303 family protein compare
MMP_RS03095 -0.7 -3.0 diphthine synthase compare
MMP_RS08240 -0.7 -3.5 methanogenesis marker 16 metalloprotein compare
MMP_RS01720 -0.7 -1.3 replication factor C large subunit compare
MMP_RS04710 -0.7 -0.9 hypothetical protein compare
MMP_RS01240 -0.7 -1.1 7-cyano-7-deazaguanine synthase QueC compare
MMP_RS07710 -0.7 -3.7 cell division protein FtsZ compare
MMP_RS02805 -0.7 -0.8 HEPN domain-containing protein compare
MMP_RS08340 -0.7 -2.4 4Fe-4S binding protein compare
MMP_RS03465 -0.7 -0.7 adenine phosphoribosyltransferase compare
MMP_RS01910 -0.7 -5.0 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS03140 -0.7 -3.9 hypothetical protein compare
MMP_RS06495 -0.7 -2.1 YkgJ family cysteine cluster protein compare
MMP_RS04125 -0.7 -3.2 TetR/AcrR family transcriptional regulator compare
MMP_RS03400 -0.7 -1.6 archease compare
MMP_RS02695 -0.7 -3.1 formylmethanofuran dehydrogenase subunit A compare
MMP_RS05875 -0.7 -2.9 hydroxyethylthiazole kinase compare
MMP_RS08760 -0.7 -0.8 hypothetical protein compare
MMP_RS00115 -0.7 -4.0 radical SAM protein compare
MMP_RS07535 -0.6 -4.0 4Fe-4S binding protein compare
MMP_RS07625 -0.6 -1.7 cobalt ECF transporter T component CbiQ compare
MMP_RS02935 -0.6 -1.5 A24 family peptidase compare
MMP_RS00080 -0.6 -2.4 RecB-family nuclease compare
MMP_RS08690 -0.6 -3.7 RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 compare
MMP_RS07615 -0.6 -2.7 energy-coupling factor ABC transporter permease compare
MMP_RS05815 -0.6 -1.2 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS00770 -0.6 -2.5 hypothetical protein compare
MMP_RS01250 -0.6 -2.0 tRNA (guanine(26)-N(2))-dimethyltransferase compare
MMP_RS07150 -0.6 -2.3 MTH895/ArsE family thioredoxin-like protein compare
MMP_RS02245 -0.6 -1.6 hypothetical protein compare
MMP_RS00295 -0.6 -1.3 gamma carbonic anhydrase family protein compare
MMP_RS02165 -0.6 -2.5 tRNA-dihydrouridine synthase compare
MMP_RS08445 -0.6 -1.4 DUF2099 family protein compare
MMP_RS04100 -0.6 -1.2 hypothetical protein compare
MMP_RS01725 -0.6 -1.8 class I SAM-dependent methyltransferase family protein compare
MMP_RS02175 -0.6 -0.5 DUF1611 domain-containing protein compare
MMP_RS06770 -0.6 -3.2 DHH family phosphoesterase compare
MMP_RS05535 -0.6 -2.1 hypothetical protein compare
MMP_RS07750 -0.6 -2.3 DUF357 domain-containing protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t1 experiments

For nutrient t1 Mc_vitamins across organisms