Experiment set5IT010 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Carnitine Hydrochloride carbon source

200 most important genes:

  gene name fitness t score description  
AO353_20620 -4.9 -7.4 isopropylmalate isomerase compare
AO353_05115 -4.7 -9.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_20635 -4.7 -11.3 3-isopropylmalate dehydrogenase compare
AO353_07700 -4.5 -5.4 electron transfer flavoprotein subunit alpha conserved
AO353_07220 -4.5 -7.5 anthranilate synthase compare
AO353_20540 -4.4 -7.9 aromatic amino acid aminotransferase compare
AO353_07745 -4.4 -5.2 NADPH:quinone reductase conserved
AO353_12365 -4.3 -4.2 phosphoribosyl-AMP cyclohydrolase compare
AO353_20665 -4.3 -11.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_12520 -4.2 -11.9 glutamate synthase compare
AO353_07680 -4.2 -10.1 Rieske (2Fe-2S) protein conserved
AO353_07750 -4.2 -6.4 carnitine 3-dehydrogenase [EC:1.1.1.108] (from data) conserved
AO353_20625 -4.2 -4.9 3-isopropylmalate dehydratase compare
AO353_08185 -4.1 -9.7 methionine biosynthesis protein MetW compare
AO353_20695 -4.1 -7.9 O-succinylhomoserine sulfhydrylase compare
AO353_07230 -4.1 -16.7 anthranilate synthase compare
AO353_22800 -4.1 -3.9 sulfite reductase compare
AO353_07655 -4.1 -9.5 sarcosine oxidase subunit delta conserved
AO353_14505 -4.1 -12.3 ketol-acid reductoisomerase compare
AO353_10670 -4.0 -8.2 shikimate dehydrogenase compare
AO353_07695 -4.0 -4.7 electron transfer flavoprotein subunit beta compare
AO353_02070 -4.0 -7.1 prephenate dehydratase compare
AO353_00430 -4.0 -5.4 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_12075 -3.9 -7.6 imidazole glycerol phosphate synthase subunit HisH compare
AO353_07210 -3.9 -5.3 indole-3-glycerol-phosphate synthase compare
AO353_14595 -3.9 -10.4 carbonate dehydratase compare
AO353_13165 -3.9 -6.4 ATP phosphoribosyltransferase regulatory subunit compare
AO353_12515 -3.9 -22.3 glutamate synthase compare
AO353_00310 -3.9 -11.1 transaldolase compare
AO353_07710 -3.8 -15.0 DgcA Dimethylglycine demethylase subunit A (from data) conserved
AO353_12070 -3.8 -9.8 imidazoleglycerol-phosphate dehydratase compare
AO353_08180 -3.8 -13.3 homoserine O-acetyltransferase compare
AO353_00620 -3.8 -3.6 cytochrome C oxidase Cbb3 compare
AO353_07785 -3.8 -8.4 ABC transporter for Carnitine, permease component (from data) conserved
AO353_07705 -3.8 -12.0 DgcB Dimethylglycine demethylase subunit B (EC 1.5.3.-) (from data) conserved
AO353_05110 -3.7 -12.0 histidinol dehydrogenase compare
AO353_12085 -3.7 -9.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_07215 -3.7 -8.2 anthranilate phosphoribosyltransferase compare
AO353_07715 -3.6 -10.7 hydrocarbon binding protein conserved
AO353_08885 -3.6 -19.0 polyphosphate kinase compare
AO353_07660 -3.6 -12.2 sarcosine oxidase (5,10-methylenetetrahydrofolate-forming), beta subunit (EC 1.5.3.24) (from data) conserved
AO353_07675 -3.6 -12.9 ferredoxin conserved
AO353_07650 -3.6 -17.3 sarcosine oxidase subunit alpha conserved
AO353_07720 -3.6 -9.0 peptidase M19 conserved
AO353_10035 -3.6 -10.0 LysR family transcriptional regulator compare
AO353_10025 -3.5 -16.6 pyruvate carboxylase subunit B compare
AO353_02710 -3.5 -13.1 (p)ppGpp synthetase compare
AO353_12500 -3.5 -2.4 shikimate kinase compare
AO353_07645 -3.5 -2.4 sarcosine oxidase subunit gamma compare
AO353_08345 -3.4 -10.3 dihydroxy-acid dehydratase compare
AO353_14400 -3.4 -4.7 Fis family transcriptional regulator compare
AO353_08685 -3.4 -7.9 N-acetylglutamate synthase compare
AO353_07735 -3.4 -6.4 AraC family transcriptional regulator conserved
AO353_08475 -3.4 -10.7 phosphoserine phosphatase compare
AO353_14495 -3.3 -12.1 acetolactate synthase 3 catalytic subunit compare
AO353_10030 -3.3 -12.6 pyruvate carboxylase subunit A compare
AO353_11850 -3.3 -5.9 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_15925 -3.3 -13.7 2-isopropylmalate synthase compare
AO353_04105 -3.2 -9.1 argininosuccinate synthase compare
AO353_08015 -3.2 -7.4 5,10-methylenetetrahydrofolate reductase compare
AO353_07770 -3.2 -7.0 AraC family transcriptional regulator conserved
AO353_03590 -3.1 -4.7 crossover junction endodeoxyribonuclease RuvC compare
AO353_07740 -3.1 -7.8 ABC transporter for Carnitine, substrate-binding component (from data) conserved
AO353_11775 -3.1 -8.7 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_03580 -3.1 -4.7 ATP-dependent DNA helicase RuvB compare
AO353_00455 -3.1 -4.5 beta-hexosaminidase compare
AO353_07525 -3.1 -14.9 biotin synthase compare
AO353_07665 -3.1 -11.8 Serine hydroxymethyltransferase (EC 2.1.2.1) (from data) conserved
AO353_07780 -3.0 -12.5 Carnitine ABC transporter, substrate-binding component CaiX (from data) conserved
AO353_07755 -3.0 -6.5 betainyl-CoA thiolase (EC 3.1.2.-) (from data) conserved
AO353_14370 -3.0 -8.8 glucose-6-phosphate isomerase compare
AO353_24130 -3.0 -4.1 hypothetical protein compare
AO353_07790 -2.9 -6.8 ABC transporter for Carnitine, ATPase component (from data) conserved
AO353_07155 -2.9 -7.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_12115 -2.8 -3.3 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_02720 -2.8 -8.0 cysteine synthase compare
AO353_10710 -2.8 -6.0 tryptophan synthase subunit beta compare
AO353_08780 -2.8 -8.4 5-formyltetrahydrofolate cyclo-ligase compare
AO353_14500 -2.8 -8.2 acetolactate synthase 3 regulatory subunit compare
AO353_04155 -2.8 -13.3 ornithine carbamoyltransferase compare
AO353_20175 -2.8 -4.2 ATP-dependent Clp protease proteolytic subunit compare
AO353_09000 -2.6 -5.6 argininosuccinate lyase compare
AO353_07355 -2.6 -6.6 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_12090 -2.6 -2.8 imidazole glycerol phosphate synthase subunit HisF compare
AO353_27935 -2.5 -5.3 succinyl-CoA--3-ketoacid-CoA transferase conserved
AO353_27930 -2.5 -6.1 LysR family transcriptional regulator compare
AO353_15250 -2.5 -4.7 cytochrome B compare
AO353_19060 -2.5 -6.5 CysB family transcriptional regulator compare
AO353_12360 -2.5 -9.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_09240 -2.5 -3.3 acetylglutamate kinase compare
AO353_15725 -2.4 -5.8 hypothetical protein compare
AO353_08465 -2.4 -14.7 phosphoenolpyruvate-protein phosphotransferase compare
AO353_08045 -2.4 -14.2 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_14420 -2.4 -5.5 molecular chaperone DnaK compare
AO353_05080 -2.4 -11.9 sulfate adenylyltransferase compare
AO353_06045 -2.4 -8.0 exodeoxyribonuclease V subunit beta compare
AO353_00825 -2.3 -4.7 porin compare
AO353_07560 -2.3 -12.3 malate synthase G compare
AO353_16880 -2.3 -13.7 potassium transporter Kup conserved
AO353_01080 -2.3 -11.1 hypothetical protein compare
AO353_20170 -2.3 -6.5 trigger factor compare
AO353_03020 -2.2 -8.6 arginine N-succinyltransferase compare
AO353_06495 -2.2 -4.5 gamma-glutamyl phosphate reductase compare
AO353_02250 -2.2 -4.0 chorismate synthase compare
AO353_07515 -2.1 -2.9 transporter compare
AO353_03585 -2.1 -3.7 ATP-dependent DNA helicase RuvA compare
AO353_06040 -2.1 -4.5 exodeoxyribonuclease V subunit alpha compare
AO353_05075 -2.1 -10.5 adenylylsulfate kinase compare
AO353_27940 -2.1 -6.7 succinyl-CoA--3-ketoacid-CoA transferase conserved
AO353_14115 -2.1 -6.0 gamma-glutamyl kinase compare
AO353_07505 -2.1 -8.5 dethiobiotin synthetase compare
AO353_12345 -2.1 -2.8 twin-arginine protein translocation system subunit TatC compare
AO353_24255 -2.0 -4.1 hypothetical protein compare
AO353_07520 -2.0 -11.2 8-amino-7-oxononanoate synthase compare
AO353_07510 -2.0 -9.6 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_00610 -2.0 -2.6 cytochrome C oxidase Cbb3 compare
AO353_03630 -2.0 -12.4 porin compare
AO353_10945 -2.0 -3.2 cytochrome C compare
AO353_01210 -2.0 -13.1 GntR family transcriptional regulator compare
AO353_08265 -2.0 -6.4 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_10455 -2.0 -1.9 tRNA modification GTPase MnmE compare
AO353_00495 -1.9 -2.8 DNA topoisomerase I compare
AO353_11750 -1.9 -3.0 ATPase compare
AO353_08165 -1.9 -3.5 pyrroline-5-carboxylate reductase compare
AO353_21625 -1.9 -3.2 Fe/S biogenesis protein NfuA compare
AO353_16940 -1.8 -5.8 deoxycytidine triphosphate deaminase compare
AO353_10705 -1.8 -4.4 tryptophan synthase subunit alpha compare
AO353_06050 -1.8 -7.2 exodeoxyribonuclease V subunit gamma compare
AO353_00650 -1.8 -3.7 cytochrome biogenesis protein compare
AO353_14405 -1.8 -9.4 ATPase compare
AO353_07290 -1.7 -8.2 mannose-1-phosphate guanylyltransferase compare
AO353_15295 -1.7 -5.7 division/cell wall cluster transcriptional repressor MraZ compare
AO353_08470 -1.7 -5.0 RNA pyrophosphohydrolase compare
AO353_05065 -1.7 -6.6 phosphate acetyltransferase conserved
AO353_17160 -1.7 -3.0 aspartate-semialdehyde dehydrogenase compare
AO353_13245 -1.7 -5.2 hypothetical protein compare
AO353_02555 -1.7 -10.0 histidine kinase compare
AO353_06405 -1.7 -4.8 hypothetical protein compare
AO353_27650 -1.7 -5.1 cell division protein FtsK compare
AO353_03060 -1.7 -13.7 Acetyl-coenzyme A synthetase (EC 6.2.1.1) (from data) compare
AO353_13140 -1.7 -5.9 tRNA dimethylallyltransferase compare
AO353_12105 -1.7 -6.3 peptidase S41 compare
AO353_27735 -1.6 -7.5 isocitrate lyase compare
AO353_06850 -1.6 -4.6 MFS transporter compare
AO353_05690 -1.5 -3.4 SsrA-binding protein compare
AO353_14775 -1.5 -5.0 hypothetical protein compare
AO353_22360 -1.4 -3.3 ABC transporter ATP-binding protein compare
AO353_07340 -1.4 -10.8 yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) compare
AO353_04220 -1.4 -4.7 chemotaxis protein CheY compare
AO353_07295 -1.4 -9.1 aminoglycoside phosphotransferase compare
AO353_00605 -1.4 -4.9 cytochrome C oxidase Cbb3 compare
AO353_18890 -1.4 -4.0 cytochrome C compare
AO353_18560 -1.4 -2.4 class I peptide chain release factor compare
AO353_16310 -1.4 -7.9 phosphoenolpyruvate carboxylase compare
AO353_16805 -1.4 -5.1 recombinase RecA compare
AO353_20095 -1.4 -4.7 histidine kinase compare
AO353_14795 -1.4 -4.7 molybdopterin-synthase adenylyltransferase compare
AO353_22375 -1.4 -3.8 cytochrome c-550 PedF compare
AO353_03235 -1.4 -6.2 glutamate-pyruvate aminotransferase compare
AO353_19360 -1.4 -2.8 peroxiredoxin compare
AO353_11080 -1.4 -8.4 NAD synthetase conserved
AO353_11165 -1.3 -7.1 hypothetical protein compare
AO353_27675 -1.3 -6.9 ATP-dependent Clp protease ATP-binding subunit ClpA compare
AO353_05105 -1.3 -7.2 histidinol-phosphate aminotransferase compare
AO353_19000 -1.3 -2.8 ABC transporter compare
AO353_00510 -1.3 -4.5 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_07345 -1.3 -10.1 ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) compare
AO353_04365 -1.3 -4.9 recombinase XerD compare
AO353_02075 -1.3 -6.3 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_07145 -1.3 -8.1 anhydro-N-acetylmuramic acid kinase compare
AO353_12870 -1.3 -8.8 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
AO353_02300 -1.2 -1.4 MarR family transcriptional regulator compare
AO353_20345 -1.2 -5.5 methylcrotonoyl-CoA carboxylase compare
AO353_09260 -1.2 -5.1 ribonuclease PH compare
AO353_27710 -1.2 -2.2 DNA repair protein compare
AO353_05195 -1.2 -6.1 glmZ(sRNA)-inactivating NTPase compare
AO353_23350 -1.2 -3.4 hypothetical protein compare
AO353_13600 -1.2 -3.5 precorrin-6Y C5,15-methyltransferase compare
AO353_00750 -1.2 -3.5 GntR family transcriptional regulator compare
AO353_04565 -1.2 -4.5 nucleoid-associated protein compare
AO353_16835 -1.2 -2.1 LuxR family transcriptional regulator compare
AO353_16925 -1.2 -9.5 AmpG family muropeptide MFS transporter compare
AO353_27685 -1.2 -4.0 cold-shock protein compare
AO353_20585 -1.2 -3.1 TetR family transcriptional regulator compare
AO353_21770 -1.2 -2.7 3-hydroxybutyrate dehydrogenase compare
AO353_10510 -1.2 -1.9 benzoate transporter compare
AO353_09285 -1.2 -6.2 reactive intermediate/imine deaminase compare
AO353_03025 -1.2 -3.8 acetylornithine aminotransferase compare
AO353_15185 -1.2 -3.7 ATPase compare
AO353_05510 -1.2 -6.0 N-acetyl-anhydromuranmyl-L-alanine amidase compare
AO353_24340 -1.2 -1.7 TetR family transcriptional regulator compare
AO353_01685 -1.2 -1.4 hypothetical protein compare
AO353_22420 -1.2 -3.8 histidine kinase compare
AO353_16495 -1.1 -4.4 zinc metallopeptidase RseP compare
AO353_17650 -1.1 -4.0 response regulator SirA compare
AO353_09345 -1.1 -2.0 hypothetical protein compare
AO353_13715 -1.1 -2.4 translation initiation factor Sui1 compare
AO353_11090 -1.1 -5.8 NADP transhydrogenase subunit alpha compare
AO353_27680 -1.1 -3.3 ATP-dependent Clp protease adaptor ClpS compare
AO353_07335 -1.1 -7.8 yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) compare


Specific Phenotypes

For 32 genes in this experiment

For carbon source Carnitine Hydrochloride in Pseudomonas fluorescens FW300-N2E3

For carbon source Carnitine Hydrochloride across organisms