Experiment set5IT010 for Pseudomonas fluorescens FW300-N1B4

Compare to:

Ammonium chloride nitrogen source

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_1408 -3.4 -4.5 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_2880 -3.4 -10.7 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_3697 -3.3 -9.6 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf1N1B4_2491 -3.2 -5.1 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf1N1B4_2547 -3.1 -3.4 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_2338 -3.0 -7.8 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_1624 -3.0 -8.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_1534 -3.0 -16.7 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_5665 -2.9 -6.0 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_2112 -2.9 -14.7 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_6 -2.9 -4.5 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_1626 -2.8 -7.0 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_2303 -2.8 -13.4 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_1307 -2.8 -3.6 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_1434 -2.7 -9.4 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_12 -2.7 -7.2 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_2384 -2.7 -10.6 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_1831 -2.6 -10.8 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_4065 -2.6 -8.5 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_2545 -2.6 -11.2 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_1627 -2.5 -5.3 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_1830 -2.5 -8.0 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_15 -2.5 -4.2 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_742 -2.5 -7.9 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_58 -2.4 -8.1 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_1533 -2.4 -6.7 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_3812 -2.4 -9.3 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_847 -2.4 -8.7 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_2858 -2.4 -9.9 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_5666 -2.4 -3.6 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_2879 -2.4 -7.4 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_2549 -2.3 -8.3 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_1067 -2.3 -5.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_3833 -2.3 -9.7 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_350 -2.3 -7.3 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_3506 -2.2 -7.8 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_2878 -2.2 -7.3 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_2272 -2.2 -3.7 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_2489 -2.2 -6.1 Biotin synthesis protein BioH compare
Pf1N1B4_1153 -2.2 -4.0 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf1N1B4_2377 -2.2 -6.7 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf1N1B4_1315 -2.2 -7.7 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_2490 -2.2 -6.4 Biotin synthesis protein BioC compare
Pf1N1B4_2282 -2.2 -8.1 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_2488 -2.2 -7.2 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf1N1B4_2010 -2.2 -6.4 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf1N1B4_2548 -2.1 -5.8 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_1565 -2.1 -4.1 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_2009 -2.1 -4.5 LysR family transcriptional regulator PA5437 compare
Pf1N1B4_2337 -2.1 -5.4 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_2011 -2.0 -8.3 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf1N1B4_5224 -2.0 -4.7 tRNA-Arg-CCT compare
Pf1N1B4_1906 -2.0 -4.0 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_2225 -2.0 -11.0 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Pf1N1B4_3153 -1.9 -2.6 hypothetical protein compare
Pf1N1B4_1 -1.9 -2.9 Colicin V production protein compare
Pf1N1B4_2005 -1.9 -2.6 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_2487 -1.9 -7.0 Biotin synthase (EC 2.8.1.6) compare
Pf1N1B4_603 -1.8 -4.1 Methylglyoxal synthase (EC 4.2.3.3) compare
Pf1N1B4_2893 -1.8 -7.9 Carbonic anhydrase (EC 4.2.1.1) compare
Pf1N1B4_1625 -1.8 -3.5 FIG00956267: hypothetical protein compare
Pf1N1B4_2280 -1.8 -7.8 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_626 -1.7 -7.1 Quinolinate synthetase (EC 2.5.1.72) compare
Pf1N1B4_1611 -1.7 -4.8 Nitrogen regulation protein NR(I) compare
Pf1N1B4_3518 -1.7 -3.1 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_3081 -1.6 -13.9 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_4957 -1.6 -2.5 Transcriptional regulator, TetR family compare
Pf1N1B4_27 -1.6 -4.2 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf1N1B4_1617 -1.6 -6.7 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_4028 -1.5 -4.2 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_1837 -1.5 -2.3 Osmotically inducible protein C compare
Pf1N1B4_751 -1.5 -2.0 hypothetical protein compare
Pf1N1B4_6041 -1.5 -3.0 Carbon storage regulator compare
Pf1N1B4_974 -1.5 -3.2 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf1N1B4_1535 -1.5 -2.9 hypothetical protein compare
Pf1N1B4_327 -1.4 -3.1 hypothetical protein compare
Pf1N1B4_3152 -1.4 -5.3 LysR family transcriptional regulator PA3398 compare
Pf1N1B4_4460 -1.4 -3.0 Cytochrome b561 compare
Pf1N1B4_1566 -1.4 -5.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_5059 -1.4 -2.1 Transcriptional regulator, LysR family compare
Pf1N1B4_1057 -1.4 -2.8 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_5560 -1.4 -2.5 hypothetical protein compare
Pf1N1B4_762 -1.4 -4.1 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_2209 -1.4 -7.4 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_2912 -1.3 -2.0 GTP-binding and nucleic acid-binding protein YchF compare
Pf1N1B4_578 -1.3 -3.0 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_384 -1.3 -2.1 proteinase inhibitor compare
Pf1N1B4_2269 -1.3 -2.8 Purine nucleoside phosphorylase (EC 2.4.2.1) compare
Pf1N1B4_556 -1.3 -3.6 Gluconate permease compare
Pf1N1B4_602 -1.3 -2.2 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf1N1B4_3713 -1.3 -2.0 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) compare
Pf1N1B4_1612 -1.3 -2.8 FIG00955429: hypothetical protein compare
Pf1N1B4_652 -1.2 -6.9 Sensory box histidine kinase compare
Pf1N1B4_4385 -1.2 -2.9 Gfa-like protein compare
Pf1N1B4_1781 -1.2 -2.0 hypothetical protein compare
Pf1N1B4_2850 -1.2 -4.9 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf1N1B4_1331 -1.2 -3.1 Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) compare
Pf1N1B4_1610 -1.2 -3.4 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf1N1B4_2004 -1.2 -2.2 putative membrane protein compare
Pf1N1B4_1317 -1.1 -2.0 Sensor histidine kinase/response regulator compare
Pf1N1B4_600 -1.1 -4.1 Glucokinase (EC 2.7.1.2) compare
Pf1N1B4_3991 -1.1 -1.3 Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family compare
Pf1N1B4_4603 -1.1 -2.4 hypothetical protein compare
Pf1N1B4_2859 -1.1 -8.1 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf1N1B4_1570 -1.1 -3.0 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) compare
Pf1N1B4_3445 -1.1 -2.9 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf1N1B4_3443 -1.1 -2.5 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf1N1B4_683 -1.1 -3.2 Fumarate hydratase class I, aerobic (EC 4.2.1.2) compare
Pf1N1B4_4627 -1.1 -1.8 FIG00957600: hypothetical protein compare
Pf1N1B4_4041 -1.1 -2.5 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
Pf1N1B4_4810 -1.1 -2.6 Polymyxin resistance protein PmrM compare
Pf1N1B4_3508 -1.1 -3.6 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf1N1B4_5880 -1.1 -2.0 AttH component of AttEFGH ABC transport system compare
Pf1N1B4_2739 -1.1 -1.4 acetyltransferase, GNAT family compare
Pf1N1B4_855 -1.1 -2.3 FIG021952: putative membrane protein compare
Pf1N1B4_717 -1.0 -5.1 Iron-regulated protein A precursor compare
Pf1N1B4_2208 -1.0 -4.5 Polyphosphate kinase (EC 2.7.4.1) compare
Pf1N1B4_716 -1.0 -2.9 Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites compare
Pf1N1B4_7 -1.0 -3.4 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf1N1B4_3322 -1.0 -5.8 L-aspartate oxidase (EC 1.4.3.16) compare
Pf1N1B4_63 -1.0 -2.2 Phosphonoacetaldehyde phosphonohydrolase-related protein compare
Pf1N1B4_5147 -1.0 -2.1 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase compare
Pf1N1B4_4299 -1.0 -2.2 sensor histidine kinase compare
Pf1N1B4_5675 -1.0 -2.5 hypothetical protein compare
Pf1N1B4_3907 -1.0 -1.5 FIG00953287: hypothetical protein compare
Pf1N1B4_718 -1.0 -4.2 outer membrane component of uptake system, probably for ferrous iron (from data) compare
Pf1N1B4_1159 -1.0 -2.4 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf1N1B4_3710 -1.0 -3.3 L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) compare
Pf1N1B4_1568 -1.0 -2.8 Twin-arginine translocation protein TatB compare
Pf1N1B4_2493 -1.0 -1.6 Acyl-CoA dehydrogenase (EC 1.3.8.7) compare
Pf1N1B4_5531 -0.9 -2.5 hypothetical protein compare
Pf1N1B4_678 -0.9 -4.6 Pyruvate kinase (EC 2.7.1.40) compare
Pf1N1B4_3906 -0.9 -2.2 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_5926 -0.9 -6.7 hypothetical protein compare
Pf1N1B4_3234 -0.9 -2.7 Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) compare
Pf1N1B4_4517 -0.9 -2.1 Dihydropyrimidinase (EC 3.5.2.2) compare
Pf1N1B4_3259 -0.9 -2.8 FIG00956006: hypothetical protein compare
Pf1N1B4_5074 -0.9 -2.1 Gluconate permease compare
Pf1N1B4_5645 -0.9 -2.5 Glutamine ABC transporter, periplasmic glutamine-binding protein (TC 3.A.1.3.2) compare
Pf1N1B4_3751 -0.9 -1.4 FIG00953060: hypothetical protein compare
Pf1N1B4_313 -0.9 -2.4 Potassium-transporting ATPase C chain (EC 3.6.3.12) (TC 3.A.3.7.1) compare
Pf1N1B4_3279 -0.9 -2.3 putative membrane protein compare
Pf1N1B4_5815 -0.9 -2.5 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) compare
Pf1N1B4_1975 -0.9 -1.9 Transcriptional regulator, AsnC family compare
Pf1N1B4_1749 -0.9 -1.1 Prevent host death protein, Phd antitoxin compare
Pf1N1B4_841 -0.9 -2.9 ABC-type sugar transport systems, ATPase components compare
Pf1N1B4_5151 -0.9 -2.0 FIG002283: Isochorismatase family protein compare
Pf1N1B4_4872 -0.9 -1.7 Short-chain dehydrogenase/reductase SDR compare
Pf1N1B4_4030 -0.9 -1.7 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
Pf1N1B4_3078 -0.9 -1.4 FIG138056: a glutathione-dependent thiol reductase compare
Pf1N1B4_648 -0.9 -7.8 Outer membrane porin, OprD family compare
Pf1N1B4_3685 -0.9 -2.6 Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) compare
Pf1N1B4_3200 -0.9 -2.1 Outer membrane lipoprotein compare
Pf1N1B4_890 -0.9 -2.0 DNA recombination and repair protein RecO compare
Pf1N1B4_3799 -0.9 -1.9 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) compare
Pf1N1B4_69 -0.9 -1.7 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf1N1B4_5904 -0.9 -1.8 FIG00955320: hypothetical protein compare
Pf1N1B4_1870 -0.8 -2.0 Zinc ABC transporter, ATP-binding protein ZnuC compare
Pf1N1B4_1869 -0.8 -3.8 Zinc ABC transporter, inner membrane permease protein ZnuB compare
Pf1N1B4_4569 -0.8 -1.8 DNA-3-methyladenine glycosylase II (EC 3.2.2.21) compare
Pf1N1B4_5652 -0.8 -1.7 ChlI component of cobalt chelatase involved in B12 biosynthesis compare
Pf1N1B4_4372 -0.8 -1.8 Galactitol utilization operon repressor compare
Pf1N1B4_4481 -0.8 -1.7 Transcriptional regulator BkdR of isoleucine and valine catabolism operon compare
Pf1N1B4_4485 -0.8 -1.3 membrane protein, putative compare
Pf1N1B4_5976 -0.8 -1.4 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) compare
Pf1N1B4_4558 -0.8 -2.1 Outer membrane lipoprotein-sorting protein compare
Pf1N1B4_4723 -0.8 -1.8 UPF0141 membrane protein YijP possibly required for phosphoethanolamine modification of lipopolysaccharide compare
Pf1N1B4_2621 -0.8 -1.3 PspA/IM30 family protein compare
Pf1N1B4_3707 -0.8 -3.7 Cobyrinic acid A,C-diamide synthase compare
Pf1N1B4_3729 -0.8 -1.7 Quaternary ammonium compound-resistance protein SugE compare
Pf1N1B4_1327 -0.8 -4.8 Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) compare
Pf1N1B4_4024 -0.8 -1.4 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_4839 -0.8 -1.6 lipoprotein compare
Pf1N1B4_2140 -0.8 -2.0 FIG00957579: hypothetical protein compare
Pf1N1B4_239 -0.8 -1.9 Similar to ribosomal large subunit pseudouridine synthase A compare
Pf1N1B4_4470 -0.8 -1.1 Cobalt-zinc-cadmium resistance protein CzcD compare
Pf1N1B4_5084 -0.8 -2.2 Capsular polysaccharide synthesis enzyme CpsD, exopolysaccharide synthesis compare
Pf1N1B4_761 -0.8 -1.8 FIG00954879: hypothetical protein compare
Pf1N1B4_4949 -0.8 -1.8 Formate dehydrogenase N gamma subunit (EC 1.2.1.2) compare
Pf1N1B4_1329 -0.8 -3.1 Cobalamin biosynthesis protein CobG compare
Pf1N1B4_5925 -0.8 -5.0 hypothetical protein compare
Pf1N1B4_2486 -0.8 -0.8 hypothetical protein compare
Pf1N1B4_2682 -0.8 -1.5 Antiholin-like protein LrgA compare
Pf1N1B4_2026 -0.8 -2.3 Transcriptional regulator compare
Pf1N1B4_5377 -0.8 -2.6 Uncharacterized domain COG3236 / GTP cyclohydrolase II (EC 3.5.4.25) compare
Pf1N1B4_3927 -0.8 -1.4 hypothetical protein compare
Pf1N1B4_5959 -0.8 -2.5 Probable signal peptide protein compare
Pf1N1B4_4936 -0.8 -3.0 hypothetical protein compare
Pf1N1B4_1901 -0.8 -2.6 Putative NADH-flavin reductase compare
Pf1N1B4_3074 -0.8 -1.4 HesA/MoeB/ThiF family protein related to EC-YgdL compare
Pf1N1B4_3715 -0.8 -2.6 Cobalamin synthase compare
Pf1N1B4_4582 -0.8 -1.6 hypothetical protein compare
Pf1N1B4_499 -0.8 -2.9 Similar to TadZ/CpaE, associated with Flp pilus assembly compare
Pf1N1B4_2039 -0.8 -1.6 hypothetical protein compare
Pf1N1B4_5031 -0.8 -2.0 Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1) compare
Pf1N1B4_211 -0.8 -5.6 Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase compare
Pf1N1B4_2178 -0.8 -1.5 Regulator of nucleoside diphosphate kinase compare
Pf1N1B4_4474 -0.8 -1.6 transcription regulator protein compare
Pf1N1B4_1059 -0.8 -1.6 FIG137478: Hypothetical protein YbgI compare
Pf1N1B4_4960 -0.8 -1.7 Protein containing transglutaminase-like domain, putative cysteine protease compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N1B4 in nitrogen source experiments

For nitrogen source Ammonium chloride across organisms