Experiment set5IT009 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Sodium Chlorite 0.00005 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_5014 -3.5 -1.8 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_5069 -3.5 -5.2 putative Cytochrome bd2, subunit II compare
Pf6N2E2_5394 -3.2 -3.8 Molybdenum cofactor biosynthesis protein MoaE compare
Pf6N2E2_5068 -3.0 -10.4 putative Cytochrome bd2, subunit I compare
Pf6N2E2_2396 -2.9 -3.9 Sensor histidine kinase compare
Pf6N2E2_1339 -2.7 -3.1 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_2692 -2.7 -4.6 RNA polymerase sigma factor RpoE compare
Pf6N2E2_5342 -2.7 -2.6 21 kDa hemolysin precursor compare
Pf6N2E2_2384 -2.7 -3.6 CmpX compare
Pf6N2E2_432 -2.6 -6.0 Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) compare
Pf6N2E2_2629 -2.6 -7.9 Phenylalanine hydroxylase transcriptional activator PhhR conserved
Pf6N2E2_3834 -2.5 -6.3 Lipoprotein NlpD compare
Pf6N2E2_2013 -2.4 -1.7 hypothetical protein compare
Pf6N2E2_2630 -2.3 -5.6 Phenylalanine 4-monooxygenase (EC 1.14.16.1) (from data) conserved
Pf6N2E2_5180 -2.3 -8.4 FIG001196: Membrane protein YedZ conserved
Pf6N2E2_5179 -2.3 -8.4 Putative sulfite oxidase subunit YedY conserved
Pf6N2E2_5392 -2.2 -3.7 Molybdenum cofactor biosynthesis protein MoaC compare
Pf6N2E2_3303 -2.2 -2.7 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_2201 -2.2 -3.0 Transmembrane regulator protein PrtR compare
Pf6N2E2_2274 -2.2 -4.0 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_3074 -2.2 -2.1 FIG00960973: hypothetical protein compare
Pf6N2E2_5223 -2.1 -3.5 Molybdopterin biosynthesis protein MoeB compare
Pf6N2E2_2496 -2.1 -2.1 FIG00956575: hypothetical protein compare
Pf6N2E2_4585 -2.1 -9.6 Cell division protein FtsX compare
Pf6N2E2_4612 -2.1 -4.2 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_431 -2.1 -5.0 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) compare
Pf6N2E2_4803 -2.1 -1.4 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_3908 -2.1 -3.4 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_3607 -2.0 -6.6 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_5962 -2.0 -5.6 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_919 -1.9 -1.6 FIG00954373: hypothetical protein compare
Pf6N2E2_3610 -1.9 -3.8 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_1490 -1.9 -2.5 hypothetical protein compare
Pf6N2E2_3252 -1.9 -5.1 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_2753 -1.9 -1.3 HtrA protease/chaperone protein compare
Pf6N2E2_2422 -1.9 -6.4 Molybdopterin biosynthesis protein MoeA compare
Pf6N2E2_40 -1.8 -4.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4414 -1.8 -2.4 FIG00953808: hypothetical protein compare
Pf6N2E2_2218 -1.8 -2.4 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_4584 -1.8 -2.7 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_3179 -1.8 -3.1 FIG021952: putative membrane protein compare
Pf6N2E2_1169 -1.8 -2.1 TnpR protein compare
Pf6N2E2_1834 -1.7 -1.6 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_3842 -1.7 -3.2 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_4372 -1.7 -3.2 FIG00460773: hypothetical protein compare
Pf6N2E2_5425 -1.7 -1.1 hypothetical protein compare
Pf6N2E2_719 -1.7 -2.7 Molybdenum cofactor biosynthesis protein MoaB compare
Pf6N2E2_3782 -1.7 -2.9 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_4072 -1.6 -3.6 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_1968 -1.6 -2.6 Cobalt-zinc-cadmium resistance protein compare
Pf6N2E2_4206 -1.6 -1.9 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_2825 -1.6 -2.3 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_3876 -1.6 -3.3 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_5944 -1.5 -4.1 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) compare
Pf6N2E2_2325 -1.5 -3.8 Recombination protein RecR compare
Pf6N2E2_5956 -1.5 -4.6 FIG004453: protein YceG like compare
Pf6N2E2_3199 -1.5 -3.9 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) compare
Pf6N2E2_3362 -1.5 -2.9 hypothetical protein compare
Pf6N2E2_4369 -1.5 -1.0 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_5671 -1.5 -2.4 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_4633 -1.5 -6.6 Cytochrome B561 compare
Pf6N2E2_3062 -1.5 -3.2 Membrane-associated zinc metalloprotease compare
Pf6N2E2_2693 -1.5 -1.9 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_1975 -1.5 -2.7 Integrase regulator R compare
Pf6N2E2_5245 -1.4 -5.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_1352 -1.4 -1.9 Cation transport ATPase compare
Pf6N2E2_2438 -1.4 -1.1 hypothetical protein compare
Pf6N2E2_2217 -1.4 -2.5 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_3617 -1.4 -3.5 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_145 -1.4 -6.3 putative exported protein compare
Pf6N2E2_2788 -1.4 -2.4 Transcriptional regulator, AsnC family compare
Pf6N2E2_2574 -1.4 -1.3 Flagellar synthesis regulator FleN compare
Pf6N2E2_3529 -1.4 -1.8 Toxin A compare
Pf6N2E2_5207 -1.4 -1.2 hypothetical protein compare
Pf6N2E2_3658 -1.3 -3.9 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_3461 -1.3 -1.1 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_2397 -1.3 -2.1 Two-component system response regulator QseB compare
Pf6N2E2_144 -1.3 -9.1 Uncharacterized protein YtfM precursor compare
Pf6N2E2_1298 -1.3 -2.7 Xanthine transporter,putative compare
Pf6N2E2_2277 -1.3 -1.7 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_3122 -1.3 -2.0 Chemotaxis signal transduction protein compare
Pf6N2E2_2473 -1.3 -1.3 Major outer membrane lipoprotein I compare
Pf6N2E2_2266 -1.3 -2.8 Copper-sensing two-component system response regulator CusR compare
Pf6N2E2_1074 -1.3 -2.3 FIG00953356: hypothetical protein compare
Pf6N2E2_3251 -1.3 -6.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_3460 -1.3 -1.2 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_3841 -1.3 -3.2 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_3192 -1.2 -3.1 tRNA:Cm32/Um32 methyltransferase compare
Pf6N2E2_5037 -1.2 -2.6 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) compare
Pf6N2E2_4276 -1.2 -3.1 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_2138 -1.2 -2.8 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Pf6N2E2_434 -1.2 -1.4 hypothetical protein compare
Pf6N2E2_4531 -1.2 -1.2 hypothetical protein compare
Pf6N2E2_1279 -1.2 -2.1 Putative PpiC-type peptidyl-prolyl cis-trans isomerase precursor associated with VreARI signaling system compare
Pf6N2E2_2827 -1.2 -1.1 hypothetical protein compare
Pf6N2E2_3253 -1.2 -3.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_4113 -1.2 -2.3 Redox-sensing transcriptional regulator QorR compare
Pf6N2E2_1617 -1.2 -1.0 COG2199: FOG: GGDEF domain compare
Pf6N2E2_6085 -1.2 -1.8 Aha1 domain superfamily compare
Pf6N2E2_3611 -1.2 -0.8 HflC protein compare
Pf6N2E2_953 -1.2 -1.9 FIG00958851: hypothetical protein compare
Pf6N2E2_3004 -1.2 -1.9 Prophage baseplate assembly protein V compare
Pf6N2E2_3516 -1.2 -1.4 Probable transmembrane protein compare
Pf6N2E2_1246 -1.2 -1.9 FIG00961372: hypothetical protein compare
Pf6N2E2_5452 -1.2 -2.0 hypothetical protein compare
Pf6N2E2_6140 -1.2 -0.8 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_5810 -1.2 -1.9 Homoserine/homoserine lactone efflux protein compare
Pf6N2E2_16 -1.2 -1.1 hypothetical protein compare
Pf6N2E2_2064 -1.2 -2.8 Cobalt-precorrin-3b C17-methyltransferase compare
Pf6N2E2_3702 -1.2 -2.2 FIG00953907: hypothetical protein compare
Pf6N2E2_1082 -1.1 -2.0 CopG protein compare
Pf6N2E2_4451 -1.1 -3.4 FIG139438: lipoprotein B compare
Pf6N2E2_4479 -1.1 -2.1 FIG001590: Putative conserved exported protein precursor compare
Pf6N2E2_3183 -1.1 -2.0 Believed to be involved in assembly of Fe-S clusters compare
Pf6N2E2_4362 -1.1 -2.2 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_3264 -1.1 -2.1 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_114 -1.1 -1.7 Polysaccharide biosynthesis protein compare
Pf6N2E2_3969 -1.1 -1.3 Membrane-fusion protein compare
Pf6N2E2_4204 -1.1 -1.1 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_893 -1.1 -2.3 hypothetical protein compare
Pf6N2E2_1966 -1.1 -1.4 SAM-dependent methyltransferases compare
Pf6N2E2_3033 -1.1 -1.4 hypothetical protein compare
Pf6N2E2_2367 -1.1 -1.6 hypothetical protein compare
Pf6N2E2_3659 -1.1 -3.0 Protein fixF compare
Pf6N2E2_2864 -1.1 -1.5 Gluconokinase (EC 2.7.1.12) compare
Pf6N2E2_4388 -1.1 -6.0 Gamma-glutamyl-putrescine oxidase (EC1.4.3.-) compare
Pf6N2E2_5150 -1.1 -3.1 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_6087 -1.1 -1.9 Short-chain dehydrogenase/reductase SDR compare
Pf6N2E2_3833 -1.1 -3.1 hypothetical protein compare
Pf6N2E2_2756 -1.1 -3.9 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_5780 -1.1 -4.7 Periplasmic protease compare
Pf6N2E2_5545 -1.1 -2.4 Queuosine Biosynthesis QueE Radical SAM compare
Pf6N2E2_4160 -1.1 -0.9 Cytochrome c5 compare
Pf6N2E2_1625 -1.1 -1.9 Ferric reductase (1.6.99.14) compare
Pf6N2E2_71 -1.1 -2.9 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_3569 -1.0 -1.4 hypothetical protein compare
Pf6N2E2_2340 -1.0 -2.8 Transcriptional regulator, GntR family compare
Pf6N2E2_3373 -1.0 -1.8 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_1774 -1.0 -1.1 DNA-binding response regulator, LuxR family, near polyamine transporter compare
Pf6N2E2_5084 -1.0 -5.1 Glutathione-regulated potassium-efflux system ATP-binding protein compare
Pf6N2E2_1782 -1.0 -1.6 STAS domain protein compare
Pf6N2E2_4050 -1.0 -1.6 FIG00953718: hypothetical protein compare
Pf6N2E2_600 -1.0 -1.4 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases compare
Pf6N2E2_54 -1.0 -1.6 Transcriptional regulator, TetR family compare
Pf6N2E2_2929 -1.0 -2.9 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_3786 -1.0 -2.0 Twin-arginine translocation protein TatC compare
Pf6N2E2_4963 -1.0 -1.4 Homoserine dehydrogenase (EC 1.1.1.3) compare
Pf6N2E2_4454 -1.0 -3.0 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_1783 -1.0 -1.8 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_3839 -1.0 -2.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_1357 -1.0 -3.7 PUTATIVE TRANSMEMBRANE PROTEIN compare
Pf6N2E2_370 -1.0 -2.5 Predicted enzyme of the cupin superfamily compare
Pf6N2E2_4797 -1.0 -1.2 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_3260 -1.0 -2.2 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_809 -1.0 -2.8 Various polyols ABC transporter, permease component 1 compare
Pf6N2E2_4074 -1.0 -6.2 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf6N2E2_2474 -1.0 -4.7 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_2536 -1.0 -1.1 Fumarate hydratase class II (EC 4.2.1.2) compare
Pf6N2E2_1087 -1.0 -4.2 Iron siderophore sensor protein compare
Pf6N2E2_1497 -1.0 -2.4 D-2-hydroxyglutarate dehydrogenase compare
Pf6N2E2_4352 -1.0 -1.7 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_1705 -1.0 -1.0 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_1797 -1.0 -1.6 Transcriptional regulator compare
Pf6N2E2_1436 -1.0 -2.6 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_1626 -1.0 -3.5 Putative ATP-binding component of a transport system compare
Pf6N2E2_1034 -1.0 -1.2 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_5571 -1.0 -1.3 hypothetical protein compare
Pf6N2E2_1249 -1.0 -2.2 Transcriptional regulator, AraC family compare
Pf6N2E2_5331 -1.0 -3.4 ATPase, AFG1 family compare
Pf6N2E2_2253 -1.0 -2.2 hypothetical protein compare
Pf6N2E2_5544 -1.0 -3.2 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_4826 -1.0 -3.6 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_449 -1.0 -2.1 Lactoylglutathione lyase (EC 4.4.1.5) compare
Pf6N2E2_2752 -1.0 -3.8 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_1065 -0.9 -1.5 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_1609 -0.9 -3.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2928 -0.9 -4.4 Uncharacterized protein conserved in bacteria, NMA0228-like compare
Pf6N2E2_4773 -0.9 -0.8 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_341 -0.9 -2.4 sensor histidine kinase compare
Pf6N2E2_1033 -0.9 -2.3 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Pf6N2E2_4921 -0.9 -1.8 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) / GTP cyclohydrolase II (EC 3.5.4.25) compare
Pf6N2E2_5242 -0.9 -1.2 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_2080 -0.9 -1.2 hypothetical protein compare
Pf6N2E2_2219 -0.9 -1.2 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_3282 -0.9 -1.2 FIG005080: Possible exported protein compare
Pf6N2E2_5494 -0.9 -2.4 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_2119 -0.9 -2.2 hypothetical protein compare
Pf6N2E2_5006 -0.9 -3.0 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_4680 -0.9 -2.3 HTH-type transcriptional regulator BetI compare
Pf6N2E2_3661 -0.9 -2.2 hypothetical protein compare
Pf6N2E2_2995 -0.9 -2.5 FIG00959768: hypothetical protein compare
Pf6N2E2_300 -0.9 -1.9 CrcB protein compare
Pf6N2E2_4570 -0.9 -2.0 Cation/multidrug efflux pump compare
Pf6N2E2_1525 -0.9 -2.4 Universal stress protein family 5 compare
Pf6N2E2_3406 -0.9 -2.0 putative ABC transporter ATP-binding protein compare
Pf6N2E2_2317 -0.9 -1.6 Putative analog of CcoH, COG3198 compare
Pf6N2E2_4638 -0.9 -1.6 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_5527 -0.9 -1.2 Cold shock protein CspC compare
Pf6N2E2_3270 -0.9 -2.2 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_1056 -0.9 -0.5 Quinone oxidoreductase (EC 1.6.5.5) compare


Specific Phenotypes

For 9 genes in this experiment

For stress Sodium Chlorite in Pseudomonas fluorescens FW300-N2E2

For stress Sodium Chlorite across organisms