Experiment set5IT009 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Sodium Chlorite 0.00005 M

200 most detrimental genes:

  gene name fitness t score description  
Pf6N2E2_3843 +9.8 91.0 MFS permease conserved
Pf6N2E2_3201 +2.5 11.7 Transcriptional regulator, MerR family compare
Pf6N2E2_1354 +2.1 1.8 FIG026291: Hypothetical periplasmic protein compare
Pf6N2E2_5316 +2.1 3.2 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_1932 +1.9 7.4 Transcriptional regulator, IclR family compare
Pf6N2E2_3587 +1.8 7.1 Azurin compare
Pf6N2E2_4889 +1.8 7.0 Putative transport protein compare
Pf6N2E2_2113 +1.8 1.6 Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Pf6N2E2_5536 +1.7 2.4 Holliday junction DNA helicase RuvA compare
Pf6N2E2_4357 +1.6 13.6 Nucleoside-diphosphate-sugar epimerases compare
Pf6N2E2_4057 +1.6 1.8 lipoprotein, putative compare
Pf6N2E2_1116 +1.5 2.8 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Pf6N2E2_4153 +1.4 2.2 Sensory box histidine kinase compare
Pf6N2E2_5723 +1.3 9.7 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf6N2E2_2181 +1.3 2.9 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_2176 +1.3 1.6 Amidases related to nicotinamidase compare
Pf6N2E2_5499 +1.3 2.0 hypothetical protein compare
Pf6N2E2_5534 +1.3 5.0 FIG000859: hypothetical protein YebC compare
Pf6N2E2_5337 +1.2 5.2 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_464 +1.2 1.5 Sensory histidine kinase QseC compare
Pf6N2E2_987 +1.2 2.3 hypothetical protein compare
Pf6N2E2_405 +1.1 2.2 hypothetical protein compare
Pf6N2E2_1758 +1.1 1.2 Transcriptional regulator, MarR family compare
Pf6N2E2_5694 +1.1 6.1 Flagellar basal-body rod protein FlgB compare
Pf6N2E2_924 +1.1 2.0 Transcriptional regulator XdhR, TetR family compare
Pf6N2E2_2152 +1.1 0.9 hypothetical protein compare
Pf6N2E2_204 +1.1 1.4 hypothetical protein compare
Pf6N2E2_4673 +1.1 4.1 ATP-dependent 23S rRNA helicase DbpA compare
Pf6N2E2_4415 +1.0 1.5 Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase compare
Pf6N2E2_5338 +1.0 6.2 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_5346 +1.0 2.2 rRNA small subunit methyltransferase I compare
Pf6N2E2_737 +1.0 1.7 Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) compare
Pf6N2E2_62 +1.0 2.8 Cys regulon transcriptional activator CysB compare
Pf6N2E2_4511 +1.0 7.3 glutamine synthetase family protein compare
Pf6N2E2_5134 +1.0 3.1 FIG060329: MOSC domain protein compare
Pf6N2E2_1983 +1.0 1.4 hypothetical protein compare
Pf6N2E2_217 +1.0 4.0 Signal transduction histidine kinase compare
Pf6N2E2_4452 +1.0 5.7 Porphobilinogen synthase (EC 4.2.1.24) compare
Pf6N2E2_2309 +0.9 1.9 hypothetical protein compare
Pf6N2E2_309 +0.9 1.6 FIG00957702: hypothetical protein compare
Pf6N2E2_476 +0.9 2.5 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_5739 +0.9 1.7 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf6N2E2_3619 +0.9 6.0 NAD(P)HX epimerase / NAD(P)HX dehydratase compare
Pf6N2E2_1501 +0.9 2.4 Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17) compare
Pf6N2E2_4084 +0.9 4.2 Transcriptional regulator compare
Pf6N2E2_6045 +0.9 1.4 hypothetical protein compare
Pf6N2E2_127 +0.9 1.6 AttE component of AttEFGH ABC transport system compare
Pf6N2E2_5771 +0.9 5.2 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) compare
Pf6N2E2_2480 +0.9 1.5 FIG00957636: hypothetical protein compare
Pf6N2E2_4052 +0.9 1.4 FIG00955481: hypothetical protein compare
Pf6N2E2_2904 +0.9 2.9 Hypothetical protein DUF454 compare
Pf6N2E2_5772 +0.9 2.7 DUF1232 domain-containing protein compare
Pf6N2E2_733 +0.9 1.7 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Pf6N2E2_2597 +0.9 5.5 Flagellar regulatory protein FleQ compare
Pf6N2E2_6090 +0.8 2.0 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf6N2E2_331 +0.8 1.5 Putative translation initiation inhibitor, yjgF family compare
Pf6N2E2_5603 +0.8 3.7 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_1090 +0.8 2.9 Transcriptional regulator for ferulate or vanillate catabolism compare
Pf6N2E2_2200 +0.8 1.5 RNA polymerase sigma-54 factor RpoN compare
Pf6N2E2_3844 +0.8 1.2 hypothetical protein compare
Pf6N2E2_3870 +0.8 1.7 hypothetical protein compare
Pf6N2E2_282 +0.8 0.8 GNAT family acetyltransferase YjcF compare
Pf6N2E2_3219 +0.8 1.9 hypothetical protein compare
Pf6N2E2_2628 +0.8 2.6 Flagellar basal-body rod protein FlgF compare
Pf6N2E2_2706 +0.8 2.4 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_1584 +0.8 2.1 Transcriptional regulator, MarR family / Acetyltransferase (GNAT) compare
Pf6N2E2_3656 +0.8 3.6 Probable transcription regulator Mig-14 compare
Pf6N2E2_2017 +0.8 1.3 DNA-binding protein compare
Pf6N2E2_5902 +0.8 1.3 hypothetical protein compare
Pf6N2E2_5160 +0.8 1.8 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_4365 +0.8 4.5 Ribonuclease PH (EC 2.7.7.56) compare
Pf6N2E2_3744 +0.8 1.9 General secretion pathway protein F compare
Pf6N2E2_4478 +0.8 4.2 FIG019278: hypothetical protein compare
Pf6N2E2_1494 +0.8 3.2 Glutamate transport membrane-spanning protein compare
Pf6N2E2_796 +0.8 3.6 Fe(2+)/alpha-ketoglutarate-dependent dioxygenase LpxO compare
Pf6N2E2_2580 +0.8 2.4 Flagellar biosynthesis protein FliP compare
Pf6N2E2_2267 +0.7 1.8 Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-) compare
Pf6N2E2_1036 +0.7 3.0 Biopolymer transport protein ExbD/TolR compare
Pf6N2E2_579 +0.7 1.3 FIG00962753: hypothetical protein compare
Pf6N2E2_2592 +0.7 3.8 Flagellar motor switch protein FliG compare
Pf6N2E2_2180 +0.7 2.0 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_251 +0.7 2.5 transcriptional regulator compare
Pf6N2E2_89 +0.7 1.4 hypothetical protein compare
Pf6N2E2_5676 +0.7 2.6 Aspartokinase (EC 2.7.2.4) compare
Pf6N2E2_3792 +0.7 3.2 Glucans biosynthesis protein G precursor compare
Pf6N2E2_819 +0.7 2.0 Response regulator compare
Pf6N2E2_5095 +0.7 2.3 Putative inner membrane protein (Fragment) compare
Pf6N2E2_736 +0.7 1.6 hypothetical protein compare
Pf6N2E2_1477 +0.7 2.8 hypothetical protein compare
Pf6N2E2_1502 +0.7 0.5 Two-component system regulatory protein compare
Pf6N2E2_4014 +0.7 4.7 Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) compare
Pf6N2E2_5677 +0.7 1.0 Carbon storage regulator compare
Pf6N2E2_2823 +0.7 2.8 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_6070 +0.7 1.3 FIG137877: Hypothetical protein in pyoverdin gene cluster compare
Pf6N2E2_6058 +0.7 2.5 FIG139976: hypothetical protein compare
Pf6N2E2_2507 +0.7 3.1 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_5714 +0.7 1.0 Flavoprotein WrbA compare
Pf6N2E2_2413 +0.7 0.8 FIG074102: hypothetical protein compare
Pf6N2E2_2682 +0.7 1.2 Transcriptional regulator, LysR family compare
Pf6N2E2_375 +0.7 2.0 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_5621 +0.7 1.8 DNA-binding response regulator compare
Pf6N2E2_1987 +0.7 0.8 hypothetical protein compare
Pf6N2E2_825 +0.7 4.0 Multidrug efflux membrane fusion protein MexE compare
Pf6N2E2_1009 +0.7 1.3 Inositol transport system permease protein compare
Pf6N2E2_1434 +0.7 1.1 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf6N2E2_2835 +0.7 1.5 Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) compare
Pf6N2E2_1870 +0.7 1.3 hypothetical protein compare
Pf6N2E2_1293 +0.7 1.6 COG2879, Hypothetical small protein yjiX compare
Pf6N2E2_3727 +0.7 2.0 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.60) compare
Pf6N2E2_5697 +0.7 5.0 Flagellar hook protein FlgE compare
Pf6N2E2_6060 +0.7 2.2 Propionate catabolism operon transcriptional regulator of GntR family [predicted] compare
Pf6N2E2_5531 +0.7 1.9 hypothetical protein compare
Pf6N2E2_1412 +0.6 1.7 hypothetical protein compare
Pf6N2E2_533 +0.6 1.9 Na(+) H(+) antiporter subunit G compare
Pf6N2E2_2583 +0.6 3.5 Flagellar motor switch protein FliM compare
Pf6N2E2_2247 +0.6 1.5 Transcriptional regulator, AraC family compare
Pf6N2E2_4662 +0.6 2.0 hypothetical protein compare
Pf6N2E2_5073 +0.6 1.6 Large-conductance mechanosensitive channel compare
Pf6N2E2_751 +0.6 2.0 Electron transfer flavoprotein, beta subunit compare
Pf6N2E2_2324 +0.6 1.4 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
Pf6N2E2_3664 +0.6 3.2 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_1248 +0.6 1.1 MutT/nudix family protein compare
Pf6N2E2_2399 +0.6 3.6 Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase compare
Pf6N2E2_647 +0.6 1.7 General secretion pathway protein G compare
Pf6N2E2_5589 +0.6 2.5 Sodium-type flagellar protein motY precursor compare
Pf6N2E2_5317 +0.6 4.4 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Pf6N2E2_3820 +0.6 1.2 hypothetical protein compare
Pf6N2E2_4364 +0.6 1.8 Protein YicC compare
Pf6N2E2_664 +0.6 0.8 Acetoin catabolism protein X compare
Pf6N2E2_3277 +0.6 1.1 FagA protein compare
Pf6N2E2_3077 +0.6 2.1 FIG138056: a glutathione-dependent thiol reductase compare
Pf6N2E2_2754 +0.6 1.7 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf6N2E2_1455 +0.6 1.8 Xylose ABC transporter, periplasmic xylose-binding protein XylF compare
Pf6N2E2_4916 +0.6 2.2 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_1124 +0.6 1.1 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_1673 +0.6 1.0 Transcriptional regulator, TetR family compare
Pf6N2E2_824 +0.6 5.1 Multidrug efflux transporter MexF compare
Pf6N2E2_5226 +0.6 1.1 FIG00955589: hypothetical protein compare
Pf6N2E2_613 +0.6 1.0 lipoprotein, putative compare
Pf6N2E2_967 +0.6 2.2 DNA repair protein RadC compare
Pf6N2E2_1956 +0.6 1.6 Outer membrane protein romA compare
Pf6N2E2_1027 +0.6 1.4 Cysteine dioxygenase (EC 1.13.11.20) compare
Pf6N2E2_3108 +0.6 0.7 FIG00953405: hypothetical protein compare
Pf6N2E2_2168 +0.6 2.6 Probable glutathione S-transferase (EC 2.5.1.18), YfcF homolog compare
Pf6N2E2_1696 +0.6 1.7 Alkanesulfonates-binding protein compare
Pf6N2E2_84 +0.6 1.3 hypothetical protein compare
Pf6N2E2_3742 +0.6 2.2 General secretion pathway protein H compare
Pf6N2E2_4540 +0.6 1.4 hypothetical protein compare
Pf6N2E2_4146 +0.6 0.7 Membrane lipoprotein lipid attachment site containing protein USSDB6D compare
Pf6N2E2_1938 +0.6 2.7 FIG00803671: hypothetical protein compare
Pf6N2E2_2563 +0.6 4.3 FIG00953562: hypothetical protein compare
Pf6N2E2_4279 +0.6 4.2 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_1055 +0.6 3.4 Transcriptional regulator MexT compare
Pf6N2E2_2849 +0.6 1.3 Chromosome initiation inhibitor compare
Pf6N2E2_3298 +0.6 2.3 2-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26) compare
Pf6N2E2_6023 +0.6 2.2 Putative cytoplasmic protein compare
Pf6N2E2_2769 +0.6 2.4 Tricarboxylate transport protein TctB compare
Pf6N2E2_2627 +0.6 3.0 Flagellar basal-body rod protein FlgG compare
Pf6N2E2_3830 +0.6 2.6 Glutaredoxin 3 (Grx3) compare
Pf6N2E2_4609 +0.6 2.3 UPF0301 protein YqgE compare
Pf6N2E2_2186 +0.6 2.4 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Pf6N2E2_2894 +0.6 1.9 N-acylglucosamine 2-epimerase (EC 5.1.3.8) compare
Pf6N2E2_1701 +0.6 1.4 ABC transporter ATP-binding protein compare
Pf6N2E2_3118 +0.6 2.4 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Pf6N2E2_2456 +0.6 2.1 Transcriptional regulator, LysR family compare
Pf6N2E2_1000 +0.6 2.5 hypothetical protein compare
Pf6N2E2_4423 +0.6 1.3 FIG00953342: hypothetical protein compare
Pf6N2E2_5622 +0.6 1.4 Translation initiation factor 2 (IF-2; GTPase) compare
Pf6N2E2_672 +0.6 1.4 ABC-type polar amino acid transport system, ATPase component compare
Pf6N2E2_728 +0.6 1.6 Nitrate/nitrite transporter compare
Pf6N2E2_3655 +0.6 4.2 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_2967 +0.6 1.0 Cold shock protein CspA compare
Pf6N2E2_1147 +0.6 1.1 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf6N2E2_2001 +0.6 2.9 Nuclease precursor (EC 3.1.30.2) compare
Pf6N2E2_1463 +0.6 1.2 Isochorismate pyruvate-lyase (EC 4.-.-.-) compare
Pf6N2E2_4795 +0.6 1.4 Acyl-phosphate:glycerol-3-phosphate O-acyltransferase PlsY compare
Pf6N2E2_2281 +0.6 1.2 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Pf6N2E2_2018 +0.6 1.4 hypothetical protein compare
Pf6N2E2_943 +0.6 2.1 Transcriptional regulator, AraC family compare
Pf6N2E2_5917 +0.6 2.0 Type II/IV secretion system protein TadC, associated with Flp pilus assembly compare
Pf6N2E2_962 +0.6 1.2 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Pf6N2E2_311 +0.6 1.9 hypothetical protein compare
Pf6N2E2_3095 +0.6 0.7 hypothetical protein compare
Pf6N2E2_2500 +0.6 1.6 Putative membrane protein compare
Pf6N2E2_4332 +0.6 2.5 hypothetical protein compare
Pf6N2E2_4360 +0.6 3.5 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf6N2E2_868 +0.6 1.3 Transcriptional regulator, HxlR family compare
Pf6N2E2_724 +0.6 0.8 Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family) compare
Pf6N2E2_4809 +0.6 4.3 COG3178: Predicted phosphotransferase related to Ser/Thr protein kinases compare
Pf6N2E2_463 +0.5 2.8 Transcriptional regulatory protein RstA compare
Pf6N2E2_2861 +0.5 1.4 hypothetical protein compare
Pf6N2E2_3484 +0.5 3.2 Multidrug resistance transporter, Bcr/CflA family compare
Pf6N2E2_3130 +0.5 1.4 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) compare
Pf6N2E2_2572 +0.5 1.1 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_5910 +0.5 1.6 Flp pilus assembly protein RcpC/CpaB compare
Pf6N2E2_3344 +0.5 1.7 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD compare
Pf6N2E2_5318 +0.5 4.6 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Pf6N2E2_2912 +0.5 0.9 FIG00954094: hypothetical protein compare
Pf6N2E2_1947 +0.5 2.1 Coenzyme PQQ synthesis protein E compare
Pf6N2E2_394 +0.5 2.0 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare


Specific Phenotypes

For 9 genes in this experiment

For stress Sodium Chlorite in Pseudomonas fluorescens FW300-N2E2

For stress Sodium Chlorite across organisms