Experiment set5IT009 for Pseudomonas fluorescens FW300-N2E3

Compare to:

L-Citrulline carbon source

200 most important genes:

  gene name fitness t score description  
AO353_02040 -5.1 -3.5 integration host factor subunit beta compare
AO353_10670 -4.8 -8.0 shikimate dehydrogenase compare
AO353_20540 -4.8 -7.3 aromatic amino acid aminotransferase compare
AO353_20695 -4.7 -7.2 O-succinylhomoserine sulfhydrylase compare
AO353_25635 -4.7 -9.5 citrulline utilization hydrolase (from data) conserved
AO353_02995 -4.6 -9.3 succinylglutamate desuccinylase compare
AO353_22800 -4.5 -3.1 sulfite reductase compare
AO353_13070 -4.5 -9.2 phosphoserine phosphatase compare
AO353_12070 -4.5 -10.5 imidazoleglycerol-phosphate dehydratase compare
AO353_13165 -4.5 -6.8 ATP phosphoribosyltransferase regulatory subunit compare
AO353_20625 -4.5 -4.3 3-isopropylmalate dehydratase compare
AO353_08345 -4.4 -9.9 dihydroxy-acid dehydratase compare
AO353_25630 -4.4 -8.9 arginine N-succinyltransferase compare
AO353_05115 -4.4 -12.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_22820 -4.4 -17.3 NAD-glutamate dehydrogenase compare
AO353_07230 -4.3 -18.6 anthranilate synthase compare
AO353_00430 -4.3 -5.1 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_03035 -4.3 -5.1 AraC family transcriptional regulator compare
AO353_14505 -4.3 -13.2 ketol-acid reductoisomerase compare
AO353_03005 -4.3 -6.5 succinylarginine dihydrolase compare
AO353_20665 -4.3 -11.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_03025 -4.3 -6.5 acetylornithine aminotransferase compare
AO353_02070 -4.3 -7.6 prephenate dehydratase compare
AO353_11850 -4.2 -7.0 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_12085 -4.1 -11.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_12090 -4.1 -2.8 imidazole glycerol phosphate synthase subunit HisF compare
AO353_10710 -4.0 -4.8 tryptophan synthase subunit beta compare
AO353_20635 -3.9 -15.0 3-isopropylmalate dehydrogenase compare
AO353_08475 -3.9 -12.0 phosphoserine phosphatase compare
AO353_20620 -3.9 -7.8 isopropylmalate isomerase compare
AO353_12500 -3.9 -2.7 shikimate kinase compare
AO353_01350 -3.9 -8.2 4-amino-4-deoxychorismate lyase compare
AO353_08180 -3.9 -16.1 homoserine O-acetyltransferase compare
AO353_08185 -3.9 -12.8 methionine biosynthesis protein MetW compare
AO353_08510 -3.8 -6.8 3-phosphoglycerate dehydrogenase compare
AO353_02075 -3.8 -13.5 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_12075 -3.8 -10.3 imidazole glycerol phosphate synthase subunit HisH compare
AO353_00310 -3.7 -12.3 transaldolase compare
AO353_15925 -3.7 -16.4 2-isopropylmalate synthase compare
AO353_02685 -3.6 -4.9 phosphoribosylglycinamide formyltransferase compare
AO353_12360 -3.6 -11.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_20175 -3.5 -3.4 ATP-dependent Clp protease proteolytic subunit compare
AO353_14500 -3.5 -9.3 acetolactate synthase 3 regulatory subunit compare
AO353_03010 -3.5 -6.6 succinylglutamate-semialdehyde dehydrogenase compare
AO353_07515 -3.5 -3.4 transporter compare
AO353_12460 -3.5 -11.1 malate dehydrogenase compare
AO353_25645 -3.4 -8.2 amino acid transporter conserved
AO353_14495 -3.4 -13.9 acetolactate synthase 3 catalytic subunit compare
AO353_08885 -3.3 -17.2 polyphosphate kinase compare
AO353_05110 -3.3 -11.1 histidinol dehydrogenase compare
AO353_07215 -3.3 -10.0 anthranilate phosphoribosyltransferase compare
AO353_07210 -3.2 -6.3 indole-3-glycerol-phosphate synthase compare
AO353_03015 -3.2 -6.8 arginine N-succinyltransferase compare
AO353_07220 -3.2 -9.0 anthranilate synthase compare
AO353_09000 -3.2 -7.0 argininosuccinate lyase compare
AO353_11775 -3.2 -9.8 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_07525 -3.1 -16.2 biotin synthase compare
AO353_03795 -3.0 -5.7 fumarate hydratase compare
AO353_14370 -3.0 -9.5 glucose-6-phosphate isomerase compare
AO353_12115 -3.0 -4.0 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_25640 -3.0 -3.7 AsnC family transcriptional regulator compare
AO353_08015 -3.0 -10.1 5,10-methylenetetrahydrofolate reductase compare
AO353_02100 -3.0 -4.9 phosphoglycolate phosphatase compare
AO353_05075 -2.9 -13.0 adenylylsulfate kinase compare
AO353_08780 -2.9 -8.7 5-formyltetrahydrofolate cyclo-ligase compare
AO353_12365 -2.9 -3.9 phosphoribosyl-AMP cyclohydrolase compare
AO353_05080 -2.9 -13.9 sulfate adenylyltransferase compare
AO353_04105 -2.8 -10.9 argininosuccinate synthase compare
AO353_15185 -2.8 -6.7 ATPase compare
AO353_14395 -2.8 -5.6 poly(A) polymerase compare
AO353_02710 -2.7 -14.3 (p)ppGpp synthetase compare
AO353_00510 -2.6 -7.0 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_00890 -2.6 -7.6 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
AO353_10035 -2.5 -9.1 LysR family transcriptional regulator compare
AO353_10025 -2.5 -13.2 pyruvate carboxylase subunit B compare
AO353_14400 -2.5 -5.1 Fis family transcriptional regulator compare
AO353_10705 -2.4 -5.8 tryptophan synthase subunit alpha compare
AO353_00825 -2.4 -5.3 porin compare
AO353_03525 -2.4 -11.3 quinolinate synthase A compare
AO353_14940 -2.4 -4.7 malate:quinone oxidoreductase compare
AO353_14420 -2.4 -6.2 molecular chaperone DnaK compare
AO353_08265 -2.4 -7.9 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_03055 -2.4 -7.7 ABC transporter for L-Arginine and L-Citrulline, periplasmic substrate-binding component (from data) compare
AO353_00750 -2.3 -5.8 GntR family transcriptional regulator compare
AO353_07505 -2.3 -8.8 dethiobiotin synthetase compare
AO353_10030 -2.3 -11.0 pyruvate carboxylase subunit A compare
AO353_22375 -2.3 -5.3 cytochrome c-550 PedF compare
AO353_00495 -2.3 -3.1 DNA topoisomerase I compare
AO353_13640 -2.3 -5.6 histidine kinase compare
AO353_12240 -2.3 -6.9 histidine utilization repressor compare
AO353_09950 -2.2 -5.2 aspartate ammonia-lyase compare
AO353_19060 -2.2 -6.2 CysB family transcriptional regulator compare
AO353_16940 -2.2 -6.7 deoxycytidine triphosphate deaminase compare
AO353_02060 -2.2 -3.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
AO353_07290 -2.1 -9.1 mannose-1-phosphate guanylyltransferase compare
AO353_07520 -2.1 -12.4 8-amino-7-oxononanoate synthase compare
AO353_07495 -2.1 -14.2 acyl-CoA dehydrogenase compare
AO353_05105 -2.1 -11.6 histidinol-phosphate aminotransferase compare
AO353_09040 -2.1 -2.1 diaminopimelate epimerase compare
AO353_13100 -2.1 -2.4 GTPase RsgA compare
AO353_05520 -2.1 -6.5 nicotinate-nucleotide pyrophosphorylase compare
AO353_08045 -2.1 -12.2 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_06045 -2.0 -8.3 exodeoxyribonuclease V subunit beta compare
AO353_13200 -2.0 -11.7 exoribonuclease R compare
AO353_24805 -2.0 -6.2 TetR family transcriptional regulator compare
AO353_13140 -2.0 -6.9 tRNA dimethylallyltransferase compare
AO353_03630 -2.0 -12.7 porin compare
AO353_03590 -2.0 -4.5 crossover junction endodeoxyribonuclease RuvC compare
AO353_17165 -2.0 -3.3 ATP-dependent helicase compare
AO353_01410 -1.9 -3.3 ribonuclease E compare
AO353_03580 -1.9 -4.5 ATP-dependent DNA helicase RuvB compare
AO353_02975 -1.9 -4.0 aspartate kinase compare
AO353_05625 -1.9 -2.1 transcription elongation factor GreA compare
AO353_00650 -1.9 -3.3 cytochrome biogenesis protein compare
AO353_09945 -1.9 -5.1 LysR family transcriptional regulator compare
AO353_17885 -1.8 -2.2 hypothetical protein compare
AO353_16845 -1.8 -8.6 LysR family transcriptional regulator compare
AO353_01355 -1.8 -7.6 3-oxoacyl-ACP synthase compare
AO353_06050 -1.8 -7.6 exodeoxyribonuclease V subunit gamma compare
AO353_07510 -1.8 -9.0 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_15170 -1.8 -2.6 cytochrome D ubiquinol oxidase subunit III compare
AO353_15725 -1.8 -4.9 hypothetical protein compare
AO353_08595 -1.8 -8.3 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) compare
AO353_06460 -1.7 -7.6 hypothetical protein compare
AO353_14935 -1.7 -4.6 aminopeptidase compare
AO353_07355 -1.7 -6.6 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_19290 -1.7 -2.8 molybdenum cofactor sulfurase compare
AO353_04665 -1.7 -9.7 ATPase compare
AO353_07295 -1.7 -10.8 aminoglycoside phosphotransferase compare
AO353_10455 -1.7 -2.2 tRNA modification GTPase MnmE compare
AO353_15250 -1.7 -3.7 cytochrome B compare
AO353_00455 -1.7 -3.3 beta-hexosaminidase compare
AO353_14150 -1.6 -2.4 peptidylprolyl isomerase compare
AO353_02940 -1.6 -2.8 DNA-binding protein compare
AO353_09285 -1.6 -8.4 reactive intermediate/imine deaminase compare
AO353_06040 -1.6 -3.8 exodeoxyribonuclease V subunit alpha compare
AO353_20410 -1.6 -2.8 hypothetical protein compare
AO353_04565 -1.6 -5.6 nucleoid-associated protein compare
AO353_17620 -1.6 -11.9 L-aspartate oxidase compare
AO353_07560 -1.6 -9.5 malate synthase G compare
AO353_19360 -1.5 -2.5 peroxiredoxin compare
AO353_10445 -1.5 -2.5 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_08165 -1.5 -3.7 pyrroline-5-carboxylate reductase compare
AO353_09045 -1.5 -2.5 hypothetical protein compare
AO353_07325 -1.5 -2.4 diadenosine tetraphosphatase compare
AO353_17410 -1.5 -2.7 arylsulfate sulfotransferase compare
AO353_12510 -1.5 -9.5 cell division protein compare
AO353_04220 -1.5 -4.7 chemotaxis protein CheY compare
AO353_01915 -1.5 -1.6 GlcG protein compare
AO353_12420 -1.4 -3.5 predicted FeS cluster maintenance protein (from data) compare
AO353_20170 -1.4 -4.1 trigger factor compare
AO353_08505 -1.4 -8.6 FAD-linked oxidase compare
AO353_11505 -1.4 -7.5 succinate-semialdehyde dehydrogenase (EC 1.2.1.16) (from data) compare
AO353_08880 -1.4 -2.1 exopolyphosphatase compare
AO353_06720 -1.4 -2.1 NrdR family transcriptional regulator compare
AO353_07645 -1.4 -1.4 sarcosine oxidase subunit gamma compare
AO353_20510 -1.4 -2.2 amidase compare
AO353_05195 -1.4 -5.9 glmZ(sRNA)-inactivating NTPase compare
AO353_10040 -1.4 -7.0 transcriptional regulator compare
AO353_27650 -1.4 -3.6 cell division protein FtsK compare
AO353_03040 -1.4 -4.9 ABC transporter for L-Arginine and L-Citrulline, ATPase component (from data) compare
AO353_19090 -1.4 -2.4 MarR family transcriptional regulator compare
AO353_03060 -1.4 -11.1 Acetyl-coenzyme A synthetase (EC 6.2.1.1) (from data) compare
AO353_22365 -1.3 -5.3 hypothetical protein compare
AO353_01375 -1.3 -4.6 phosphate acyltransferase compare
AO353_09260 -1.3 -5.7 ribonuclease PH compare
AO353_27995 -1.3 -4.2 RpiR family transcriptional regulator compare
AO353_28425 -1.3 -3.6 TetR family transcriptional regulator compare
AO353_27675 -1.3 -7.1 ATP-dependent Clp protease ATP-binding subunit ClpA compare
AO353_07895 -1.3 -2.9 fructose-bisphosphate aldolase compare
AO353_05690 -1.3 -2.8 SsrA-binding protein compare
AO353_20630 -1.3 -6.5 SAM-dependent methyltransferase compare
AO353_18285 -1.3 -2.8 3-phosphoglycerate kinase compare
AO353_08465 -1.3 -9.2 phosphoenolpyruvate-protein phosphotransferase compare
AO353_26655 -1.3 -4.0 branched-chain amino acid aminotransferase compare
AO353_13390 -1.3 -7.9 N-acylglucosamine 2-epimerase compare
AO353_17675 -1.3 -5.1 hypothetical protein compare
AO353_22385 -1.3 -8.2 dehydrogenase compare
AO353_14775 -1.3 -5.5 hypothetical protein compare
AO353_16925 -1.2 -9.5 AmpG family muropeptide MFS transporter compare
AO353_13605 -1.2 -6.7 oxidoreductase compare
AO353_07145 -1.2 -6.6 anhydro-N-acetylmuramic acid kinase compare
AO353_02720 -1.2 -4.8 cysteine synthase compare
AO353_16805 -1.2 -4.6 recombinase RecA compare
AO353_04355 -1.2 -1.7 homoserine dehydrogenase compare
AO353_03045 -1.2 -5.7 ABC transporter for L-Arginine and L-Citrulline, permease component 1 (from data) compare
AO353_04650 -1.2 -2.6 molybdenum cofactor biosynthesis protein MoaE compare
AO353_10630 -1.2 -3.7 16S rRNA methyltransferase compare
AO353_10945 -1.1 -2.5 cytochrome C compare
AO353_02555 -1.1 -7.7 histidine kinase compare
AO353_09745 -1.1 -2.2 hypothetical protein compare
AO353_06850 -1.1 -2.6 MFS transporter compare
AO353_09885 -1.1 -1.7 transcriptional regulator PhoU compare
AO353_02580 -1.1 -9.1 Long-chain fatty acid transport protein compare
AO353_19280 -1.1 -2.2 hypothetical protein compare
AO353_15905 -1.1 -5.4 outer membrane protein assembly factor BamB compare
AO353_14930 -1.1 -1.8 GntR family transcriptional regulator compare
AO353_08350 -1.1 -5.3 hypothetical protein compare
AO353_22380 -1.1 -4.1 amino acid ABC transporter substrate-binding protein compare
AO353_03605 -1.1 -1.3 FmdB family transcriptional regulator compare


Specific Phenotypes

For 11 genes in this experiment

For carbon source L-Citrulline in Pseudomonas fluorescens FW300-N2E3

For carbon source L-Citrulline across organisms