Experiment set5IT009 for Cupriavidus basilensis FW507-4G11

Compare to:

R2A with D-Cycloserine 0.01 mg/ml

200 most important genes:

  gene name fitness t score description  
RR42_RS13910 -5.8 -8.8 glutamate racemase compare
RR42_RS11770 -3.1 -3.5 cyclase compare
RR42_RS03095 -2.7 -2.3 succinyl-CoA synthetase subunit beta compare
RR42_RS19885 -2.3 -1.9 aminoglycoside transporter compare
RR42_RS07555 -2.2 -2.5 potassium transporter Kup compare
RR42_RS13905 -2.1 -3.0 fumarate hydratase compare
RR42_RS06240 -1.9 -2.4 tryptophan--tRNA ligase compare
RR42_RS07365 -1.9 -2.8 pyruvate dehydrogenase compare
RR42_RS02705 -1.8 -2.7 Holliday junction DNA helicase RuvA compare
RR42_RS19005 -1.8 -5.7 3-dehydroquinate synthase compare
RR42_RS12615 -1.7 -2.8 LexA family transcriptional regulator compare
RR42_RS19045 -1.6 -1.5 frataxin compare
RR42_RS24930 -1.6 -1.3 AraC family transcriptional regulator compare
RR42_RS26265 -1.6 -1.7 hypothetical protein compare
RR42_RS21955 -1.5 -2.1 hypothetical protein compare
RR42_RS19085 -1.5 -1.4 cytochrome C biogenesis protein ResB compare
RR42_RS17355 -1.5 -1.2 hypothetical protein compare
RR42_RS33250 -1.5 -5.4 tyrosine protein kinase compare
RR42_RS14365 -1.4 -2.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS21220 -1.4 -2.6 iron transporter FeoB compare
RR42_RS18140 -1.3 -1.7 MarR family transcriptional regulator compare
RR42_RS17885 -1.3 -4.2 ABC transporter permease compare
RR42_RS07115 -1.3 -1.3 hypothetical protein compare
RR42_RS16525 -1.3 -2.7 anti-sigma factor compare
RR42_RS13935 -1.3 -2.0 hemin transporter compare
RR42_RS17720 -1.3 -2.1 sugar kinase compare
RR42_RS02420 -1.3 -1.1 SAM-dependent methyltransferase compare
RR42_RS18850 -1.2 -2.8 preprotein translocase subunit TatC compare
RR42_RS31900 -1.2 -2.5 short-chain dehydrogenase compare
RR42_RS02500 -1.2 -1.7 TetR family transcriptional regulator compare
RR42_RS32645 -1.2 -1.7 2-keto-4-pentenoate hydratase compare
RR42_RS19485 -1.2 -1.1 general secretion pathway protein GspH compare
RR42_RS19900 -1.2 -1.8 MerR family transcriptional regulator compare
RR42_RS32590 -1.2 -1.6 cytochrome o ubiquinol oxidase subunit III compare
RR42_RS00715 -1.2 -1.5 ferritin compare
RR42_RS04850 -1.2 -1.8 hypothetical protein compare
RR42_RS36445 -1.2 -2.5 acetyl-CoA acetyltransferase compare
RR42_RS28885 -1.2 -3.9 membrane protein compare
RR42_RS06095 -1.2 -3.7 hypothetical protein compare
RR42_RS19695 -1.1 -1.8 cytochrome C protein compare
RR42_RS17685 -1.1 -5.3 alkyl hydroperoxide reductase compare
RR42_RS17970 -1.1 -2.0 hypothetical protein compare
RR42_RS14860 -1.1 -2.3 hypothetical protein compare
RR42_RS06860 -1.1 -1.5 hypothetical protein compare
RR42_RS33260 -1.1 -4.2 multidrug MFS transporter compare
RR42_RS26535 -1.1 -3.0 diguanylate cyclase compare
RR42_RS08425 -1.1 -0.9 hypothetical protein compare
RR42_RS03080 -1.0 -2.4 recombinase RecA compare
RR42_RS06000 -1.0 -1.2 antibiotic biosynthesis monooxygenase compare
RR42_RS20775 -1.0 -1.0 hypothetical protein compare
RR42_RS01895 -1.0 -3.9 MFS transporter compare
RR42_RS04255 -1.0 -1.6 chemotaxis protein CheW compare
RR42_RS07440 -1.0 -2.5 hypothetical protein compare
RR42_RS34485 -1.0 -2.4 AraC family transcriptional regulator compare
RR42_RS15740 -1.0 -1.4 hypothetical protein compare
RR42_RS21040 -1.0 -1.0 hypothetical protein compare
RR42_RS32035 -0.9 -3.3 short-chain dehydrogenase compare
RR42_RS12550 -0.9 -3.3 hypothetical protein compare
RR42_RS17620 -0.9 -3.0 phosphatidylglycerophosphatase compare
RR42_RS18855 -0.9 -2.2 preprotein translocase compare
RR42_RS15465 -0.9 -1.0 TonB-dependent receptor compare
RR42_RS31885 -0.9 -2.4 sialidase compare
RR42_RS02785 -0.9 -2.3 dimethyladenosine transferase compare
RR42_RS25785 -0.9 -1.6 TetR family transcriptional regulator compare
RR42_RS24510 -0.9 -0.9 hypothetical protein compare
RR42_RS11580 -0.9 -1.2 hypothetical protein compare
RR42_RS13025 -0.9 -2.6 hypothetical protein compare
RR42_RS15470 -0.9 -1.4 biopolymer transporter ExbD compare
RR42_RS20810 -0.9 -1.2 hypothetical protein compare
RR42_RS04475 -0.9 -4.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS26935 -0.9 -2.4 farnesyl-diphosphate farnesyltransferase compare
RR42_RS01885 -0.8 -3.6 cytochrome C oxidase assembly protein compare
RR42_RS06485 -0.8 -3.6 chorismate synthase compare
RR42_RS33255 -0.8 -2.0 protein-tyrosine phosphatase compare
RR42_RS36130 -0.8 -5.5 phytanoyl-CoA dioxygenase compare
RR42_RS32595 -0.8 -3.8 cytochrome o ubiquinol oxidase subunit I compare
RR42_RS07380 -0.8 -2.1 dihydrolipoamide dehydrogenase compare
RR42_RS29280 -0.8 -1.2 hypothetical protein compare
RR42_RS20005 -0.8 -2.2 hypothetical protein compare
RR42_RS15015 -0.8 -0.7 exodeoxyribonuclease VII small subunit compare
RR42_RS03440 -0.8 -3.3 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
RR42_RS03620 -0.8 -2.0 lipid A biosynthesis lauroyl acyltransferase compare
RR42_RS13125 -0.8 -2.2 pyrrolo-quinoline quinone compare
RR42_RS17805 -0.8 -0.8 hypothetical protein compare
RR42_RS18300 -0.8 -2.8 anthranilate synthase subunit II compare
RR42_RS08035 -0.8 -2.4 DNA methyltransferase compare
RR42_RS09085 -0.8 -1.0 C4-dicarboxylate ABC transporter permease compare
RR42_RS05945 -0.8 -1.2 thioredoxin compare
RR42_RS05920 -0.8 -2.6 HrcA family transcriptional regulator compare
RR42_RS15450 -0.8 -1.6 Tol system periplasmic component YbgF compare
RR42_RS06325 -0.8 -1.5 serine O-acetyltransferase compare
RR42_RS01925 -0.8 -4.3 photosynthetic protein synthase I compare
RR42_RS21435 -0.8 -2.2 hypothetical protein compare
RR42_RS08715 -0.8 -2.5 LysR family transcriptional regulator compare
RR42_RS28695 -0.8 -1.6 hypothetical protein compare
RR42_RS11765 -0.8 -1.6 protein RnfH compare
RR42_RS31530 -0.8 -1.5 histidine kinase compare
RR42_RS09015 -0.8 -1.9 trigger factor compare
RR42_RS13515 -0.8 -2.5 membrane protein compare
RR42_RS07620 -0.8 -3.7 polyhydroxyalkanoate synthesis repressor PhaR compare
RR42_RS08180 -0.8 -0.9 hypothetical protein compare
RR42_RS19555 -0.8 -1.1 hypothetical protein compare
RR42_RS14360 -0.7 -1.0 tryptophan synthase subunit alpha compare
RR42_RS07565 -0.7 -3.9 transcription accessory protein compare
RR42_RS28620 -0.7 -1.5 ABC transporter compare
RR42_RS18840 -0.7 -2.1 2-alkenal reductase compare
RR42_RS06875 -0.7 -1.5 hypothetical protein compare
RR42_RS18315 -0.7 -2.5 toxin compare
RR42_RS28550 -0.7 -1.6 enoyl-CoA hydratase compare
RR42_RS01880 -0.7 -3.1 cytochrome oxidase subunit I compare
RR42_RS09565 -0.7 -2.5 hypothetical protein compare
RR42_RS37115 -0.7 -1.5 hypothetical protein compare
RR42_RS06270 -0.7 -3.4 cupin compare
RR42_RS01875 -0.7 -3.2 cytochrome C oxidase subunit II compare
RR42_RS09580 -0.7 -0.9 hypothetical protein compare
RR42_RS09590 -0.7 -1.3 hypothetical protein compare
RR42_RS16910 -0.7 -1.1 histidine utilization protein HutD compare
RR42_RS01755 -0.7 -1.6 nitrogen regulatory protein P-II 1 compare
RR42_RS24690 -0.7 -1.0 hypothetical protein compare
RR42_RS28005 -0.7 -1.7 phosphonate/organophosphate ester transporter subunit compare
RR42_RS31125 -0.7 -2.5 hypothetical protein compare
RR42_RS06245 -0.7 -2.3 SAM-dependent methyltransferase compare
RR42_RS06730 -0.7 -3.6 hypothetical protein compare
RR42_RS01915 -0.7 -3.6 cytochrome C oxidase subunit I compare
RR42_RS15775 -0.7 -2.2 N-acetylneuraminate synthase compare
RR42_RS18305 -0.7 -1.9 anthranilate phosphoribosyltransferase compare
RR42_RS08225 -0.7 -2.4 chromosome partitioning protein ParB compare
RR42_RS12040 -0.7 -4.8 MFS transporter compare
RR42_RS37160 -0.7 -2.4 DNA-binding protein compare
RR42_RS23760 -0.7 -2.3 tRNA-Asn compare
RR42_RS16895 -0.7 -4.5 N-formylglutamate deformylase (EC 3.5.1.68) (from data) compare
RR42_RS28090 -0.7 -2.4 carbon-phosphorus lyase compare
RR42_RS24460 -0.7 -1.8 hypothetical protein compare
RR42_RS02225 -0.7 -2.2 ABC transporter substrate-binding protein compare
RR42_RS32585 -0.7 -1.3 cytochrome C oxidase compare
RR42_RS26405 -0.7 -1.3 hypothetical protein compare
RR42_RS15120 -0.7 -1.1 4-oxalocrotonate tautomerase compare
RR42_RS28195 -0.7 -2.3 SAM-dependent methyltransferase compare
RR42_RS28425 -0.7 -1.8 3-hydroxybutyryl-CoA dehydratase compare
RR42_RS01085 -0.7 -3.4 chemotaxis protein CheY compare
RR42_RS15675 -0.7 -3.0 heat-shock protein HslJ compare
RR42_RS08700 -0.7 -1.6 hypothetical protein compare
RR42_RS15135 -0.7 -1.4 LysR family transcriptional regulator compare
RR42_RS09260 -0.7 -3.0 TetR family transcriptional regulator compare
RR42_RS26770 -0.7 -1.1 extradiol dioxygenase compare
RR42_RS33210 -0.7 -2.2 teichoic acid biosynthesis protein compare
RR42_RS23765 -0.7 -1.7 tRNA-Gly compare
RR42_RS04180 -0.7 -1.1 methyltransferase compare
RR42_RS01355 -0.7 -2.2 biotin attachment protein compare
RR42_RS15455 -0.7 -2.1 membrane protein compare
RR42_RS36560 -0.7 -3.1 ABC transporter substrate-binding protein compare
RR42_RS06635 -0.7 -2.5 MerR family transcriptional regulator compare
RR42_RS23495 -0.7 -2.9 benzene 1,2-dioxygenase compare
RR42_RS11985 -0.6 -1.2 glutathione ABC transporter permease compare
RR42_RS30930 -0.6 -2.3 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
RR42_RS12590 -0.6 -0.7 50S ribosomal protein L9 compare
RR42_RS19010 -0.6 -2.7 shikimate kinase compare
RR42_RS34675 -0.6 -1.7 NADPH:quinone reductase compare
RR42_RS33860 -0.6 -1.5 3-demethylubiquinone-9 3-methyltransferase compare
RR42_RS12925 -0.6 -1.0 ATPase compare
RR42_RS03875 -0.6 -1.2 nucleoside 2-deoxyribosyltransferase compare
RR42_RS04415 -0.6 -3.6 ABC transporter compare
RR42_RS13130 -0.6 -1.7 membrane protein compare
RR42_RS01970 -0.6 -4.0 maleylacetoacetate isomerase compare
RR42_RS32830 -0.6 -1.1 hypothetical protein compare
RR42_RS32085 -0.6 -0.9 hypothetical protein compare
RR42_RS01820 -0.6 -2.3 peptidase S41 compare
RR42_RS17390 -0.6 -2.9 ATP-dependent DNA helicase RecG compare
RR42_RS08025 -0.6 -1.0 phage Gp37Gp68 compare
RR42_RS04410 -0.6 -3.7 cyanophycin synthetase compare
RR42_RS13800 -0.6 -3.1 formyltetrahydrofolate deformylase compare
RR42_RS05610 -0.6 -2.1 dehydratase compare
RR42_RS21125 -0.6 -1.1 membrane protein compare
RR42_RS33595 -0.6 -1.1 hypothetical protein compare
RR42_RS17735 -0.6 -2.0 hypothetical protein compare
RR42_RS30835 -0.6 -2.3 hypothetical protein compare
RR42_RS16675 -0.6 -1.0 hypothetical protein compare
RR42_RS22590 -0.6 -0.6 organic hydroperoxide resistance protein compare
RR42_RS08770 -0.6 -0.8 2-nitropropane dioxygenase compare
RR42_RS15845 -0.6 -1.4 biotin transporter BioY compare
RR42_RS04470 -0.6 -2.4 prephenate dehydrogenase compare
RR42_RS18020 -0.6 -1.1 ornithine acetyltransferase compare
RR42_RS06405 -0.6 -2.2 membrane protein compare
RR42_RS36120 -0.6 -2.0 LysR family transcriptional regulator compare
RR42_RS00625 -0.6 -0.9 hypothetical protein compare
RR42_RS35995 -0.6 -1.6 membrane protein compare
RR42_RS10920 -0.6 -1.1 hypothetical protein compare
RR42_RS31355 -0.6 -2.0 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
RR42_RS15795 -0.6 -2.3 spore coat protein compare
RR42_RS33245 -0.6 -2.5 mannose-1-phosphate guanyltransferase compare
RR42_RS01910 -0.6 -2.8 cytochrome C oxidase subunit I compare
RR42_RS20260 -0.6 -2.3 hypothetical protein compare
RR42_RS05965 -0.6 -1.1 malonic semialdehyde reductase compare
RR42_RS30485 -0.6 -2.4 hypothetical protein compare
RR42_RS07045 -0.6 -1.2 hypothetical protein compare
RR42_RS03485 -0.6 -1.4 type VI secretion protein compare
RR42_RS17645 -0.6 -2.9 shikimate dehydrogenase compare
RR42_RS36815 -0.6 -1.8 ferredoxin compare
RR42_RS35720 -0.6 -1.6 flagellar basal body rod protein FlgC compare
RR42_RS01705 -0.6 -0.7 Fis family transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Cupriavidus basilensis FW507-4G11 in stress experiments

For stress D-Cycloserine across organisms