Experiment set5IT008 for Pseudomonas fluorescens FW300-N2E3

Compare to:

D-Alanine carbon source

200 most important genes:

  gene name fitness t score description  
AO353_20695 -4.4 -5.2 O-succinylhomoserine sulfhydrylase compare
AO353_05115 -4.2 -7.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_12520 -4.2 -7.0 glutamate synthase compare
AO353_20665 -4.2 -8.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_20635 -4.1 -8.8 3-isopropylmalate dehydrogenase compare
AO353_12085 -4.0 -6.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_12515 -4.0 -15.1 glutamate synthase compare
AO353_13165 -3.9 -3.8 ATP phosphoribosyltransferase regulatory subunit compare
AO353_09155 -3.9 -6.0 amino acid dehydrogenase compare
AO353_07220 -3.9 -6.0 anthranilate synthase compare
AO353_07230 -3.9 -11.7 anthranilate synthase compare
AO353_10670 -3.8 -6.9 shikimate dehydrogenase compare
AO353_13070 -3.8 -7.4 phosphoserine phosphatase compare
AO353_08475 -3.8 -6.9 phosphoserine phosphatase compare
AO353_14505 -3.8 -9.2 ketol-acid reductoisomerase compare
AO353_12070 -3.8 -6.4 imidazoleglycerol-phosphate dehydratase compare
AO353_20625 -3.8 -3.7 3-isopropylmalate dehydratase compare
AO353_07515 -3.8 -2.6 transporter compare
AO353_20540 -3.7 -6.6 aromatic amino acid aminotransferase compare
AO353_08180 -3.7 -8.6 homoserine O-acetyltransferase compare
AO353_07525 -3.7 -11.1 biotin synthase compare
AO353_02075 -3.6 -9.0 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_02070 -3.5 -5.4 prephenate dehydratase compare
AO353_15925 -3.5 -11.7 2-isopropylmalate synthase compare
AO353_08185 -3.5 -8.1 methionine biosynthesis protein MetW compare
AO353_10035 -3.5 -8.1 LysR family transcriptional regulator compare
AO353_20620 -3.5 -7.2 isopropylmalate isomerase compare
AO353_07510 -3.5 -8.9 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_10025 -3.4 -11.5 pyruvate carboxylase subunit B compare
AO353_09160 -3.4 -10.5 AsnC family transcriptional regulator conserved
AO353_08345 -3.4 -7.3 dihydroxy-acid dehydratase compare
AO353_12365 -3.3 -4.0 phosphoribosyl-AMP cyclohydrolase compare
AO353_10030 -3.3 -8.4 pyruvate carboxylase subunit A compare
AO353_05110 -3.3 -9.1 histidinol dehydrogenase compare
AO353_14495 -3.3 -7.7 acetolactate synthase 3 catalytic subunit compare
AO353_19060 -3.2 -3.8 CysB family transcriptional regulator compare
AO353_07210 -3.2 -4.4 indole-3-glycerol-phosphate synthase compare
AO353_07505 -3.2 -7.3 dethiobiotin synthetase compare
AO353_10710 -3.2 -3.1 tryptophan synthase subunit beta compare
AO353_07215 -3.1 -6.4 anthranilate phosphoribosyltransferase compare
AO353_14400 -3.1 -3.1 Fis family transcriptional regulator compare
AO353_00430 -3.1 -4.3 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_12090 -3.1 -2.1 imidazole glycerol phosphate synthase subunit HisF compare
AO353_21625 -3.1 -3.0 Fe/S biogenesis protein NfuA compare
AO353_07155 -3.1 -4.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_12360 -3.1 -7.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_08685 -3.1 -5.5 N-acetylglutamate synthase compare
AO353_12075 -3.0 -7.4 imidazole glycerol phosphate synthase subunit HisH compare
AO353_07520 -3.0 -10.9 8-amino-7-oxononanoate synthase compare
AO353_11775 -3.0 -6.5 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_22800 -3.0 -3.6 sulfite reductase compare
AO353_08045 -3.0 -12.7 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_21455 -3.0 -2.7 cation:proton antiporter compare
AO353_12500 -3.0 -2.0 shikimate kinase compare
AO353_01375 -3.0 -7.1 phosphate acyltransferase compare
AO353_08510 -2.9 -4.4 3-phosphoglycerate dehydrogenase compare
AO353_04155 -2.9 -9.9 ornithine carbamoyltransferase compare
AO353_09745 -2.9 -2.8 hypothetical protein compare
AO353_06495 -2.8 -5.4 gamma-glutamyl phosphate reductase compare
AO353_12150 -2.8 -5.7 histidine kinase compare
AO353_14115 -2.8 -5.6 gamma-glutamyl kinase compare
AO353_08465 -2.7 -13.5 phosphoenolpyruvate-protein phosphotransferase compare
AO353_27650 -2.7 -4.9 cell division protein FtsK compare
AO353_14500 -2.7 -6.3 acetolactate synthase 3 regulatory subunit compare
AO353_06455 -2.7 -2.6 D-alanyl-D-alanine carboxypeptidase compare
AO353_14595 -2.7 -8.6 carbonate dehydratase compare
AO353_05105 -2.7 -9.1 histidinol-phosphate aminotransferase compare
AO353_04105 -2.6 -7.0 argininosuccinate synthase compare
AO353_14370 -2.6 -6.9 glucose-6-phosphate isomerase compare
AO353_08015 -2.6 -6.0 5,10-methylenetetrahydrofolate reductase compare
AO353_08165 -2.6 -2.5 pyrroline-5-carboxylate reductase compare
AO353_09240 -2.6 -1.8 acetylglutamate kinase compare
AO353_03015 -2.6 -4.9 arginine N-succinyltransferase compare
AO353_02005 -2.5 -2.4 hypothetical protein compare
AO353_02720 -2.5 -6.1 cysteine synthase compare
AO353_03580 -2.5 -3.4 ATP-dependent DNA helicase RuvB compare
AO353_03585 -2.5 -3.4 ATP-dependent DNA helicase RuvA compare
AO353_02640 -2.5 -2.2 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO353_09000 -2.5 -4.7 argininosuccinate lyase compare
AO353_04565 -2.5 -5.0 nucleoid-associated protein compare
AO353_04325 -2.4 -2.9 hypothetical protein compare
AO353_03590 -2.4 -3.7 crossover junction endodeoxyribonuclease RuvC compare
AO353_06040 -2.4 -3.3 exodeoxyribonuclease V subunit alpha compare
AO353_16120 -2.4 -12.8 D-alanine and L-alanine transporter (from data) conserved
AO353_16940 -2.4 -4.6 deoxycytidine triphosphate deaminase compare
AO353_06050 -2.4 -5.5 exodeoxyribonuclease V subunit gamma compare
AO353_23495 -2.3 -2.7 SAM-dependent methyltransferase compare
AO353_08780 -2.3 -6.6 5-formyltetrahydrofolate cyclo-ligase compare
AO353_12105 -2.3 -5.3 peptidase S41 compare
AO353_02280 -2.3 -2.0 DNA mismatch repair protein MutS compare
AO353_00460 -2.3 -3.4 TetR family transcriptional regulator compare
AO353_00310 -2.2 -7.9 transaldolase compare
AO353_12115 -2.2 -2.6 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_13155 -2.2 -3.4 hypothetical protein compare
AO353_00495 -2.2 -2.6 DNA topoisomerase I compare
AO353_23405 -2.2 -1.9 hypothetical protein compare
AO353_02250 -2.1 -3.5 chorismate synthase compare
AO353_20510 -2.1 -2.3 amidase compare
AO353_03020 -2.1 -7.4 arginine N-succinyltransferase compare
AO353_00825 -2.1 -3.5 porin compare
AO353_21630 -2.1 -2.8 precorrin-4 C11-methyltransferase compare
AO353_09285 -2.1 -8.8 reactive intermediate/imine deaminase compare
AO353_20170 -2.0 -5.4 trigger factor compare
AO353_13100 -2.0 -1.9 GTPase RsgA compare
AO353_10705 -2.0 -3.6 tryptophan synthase subunit alpha compare
AO353_04090 -2.0 -2.9 leucyl-tRNA synthetase compare
AO353_06045 -2.0 -6.2 exodeoxyribonuclease V subunit beta compare
AO353_07355 -2.0 -4.9 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_13140 -2.0 -4.5 tRNA dimethylallyltransferase compare
AO353_04365 -1.9 -4.5 recombinase XerD compare
AO353_20175 -1.9 -2.9 ATP-dependent Clp protease proteolytic subunit compare
AO353_12350 -1.9 -3.0 preprotein translocase compare
AO353_09040 -1.9 -2.0 diaminopimelate epimerase compare
AO353_14775 -1.9 -5.4 hypothetical protein compare
AO353_06720 -1.9 -2.6 NrdR family transcriptional regulator compare
AO353_12240 -1.9 -4.7 histidine utilization repressor compare
AO353_01015 -1.9 -2.8 hypothetical protein compare
AO353_16375 -1.9 -2.5 hypothetical protein compare
AO353_19605 -1.9 -2.2 hypothetical protein compare
AO353_07075 -1.8 -4.4 elongation factor Tu compare
AO353_12145 -1.8 -3.9 nitrogen regulation protein NR(I) compare
AO353_00865 -1.8 -7.6 phosphoenolpyruvate synthase compare
AO353_00890 -1.8 -4.9 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
AO353_10430 -1.8 -3.3 chromosome partitioning protein ParB compare
AO353_09720 -1.8 -1.7 hypothetical protein compare
AO353_05075 -1.7 -7.7 adenylylsulfate kinase compare
AO353_02975 -1.7 -2.3 aspartate kinase compare
AO353_08885 -1.7 -10.8 polyphosphate kinase compare
AO353_03615 -1.7 -2.8 cold-shock protein compare
AO353_22735 -1.7 -2.5 hypothetical protein compare
AO353_15185 -1.7 -4.3 ATPase compare
AO353_18540 -1.7 -2.5 pseudouridine synthase compare
AO353_11530 -1.7 -6.9 diguanylate cyclase compare
AO353_11165 -1.7 -7.0 hypothetical protein compare
AO353_14405 -1.7 -8.9 ATPase compare
AO353_10435 -1.7 -6.9 chromosome partitioning protein compare
AO353_05080 -1.7 -7.9 sulfate adenylyltransferase compare
AO353_20840 -1.7 -2.4 ribose pyranase compare
AO353_09260 -1.6 -5.6 ribonuclease PH compare
AO353_12690 -1.6 -1.1 acyl carrier protein compare
AO353_13590 -1.6 -4.6 cobalt-precorrin-6X reductase compare
AO353_01045 -1.6 -3.0 phasin compare
AO353_03250 -1.6 -1.9 gluconokinase compare
AO353_11940 -1.6 -2.6 hypothetical protein compare
AO353_11850 -1.5 -3.4 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_14220 -1.5 -1.4 ribosomal large subunit pseudouridine synthase D compare
AO353_25640 -1.5 -2.1 AsnC family transcriptional regulator compare
AO353_02710 -1.5 -8.4 (p)ppGpp synthetase compare
AO353_15170 -1.5 -2.5 cytochrome D ubiquinol oxidase subunit III compare
AO353_05240 -1.5 -2.0 rod shape-determining protein MreD compare
AO353_18305 -1.5 -3.1 RNA helicase compare
AO353_00490 -1.5 -2.4 PasA protein compare
AO353_11915 -1.4 -5.3 agmatine deiminase compare
AO353_14150 -1.4 -1.7 peptidylprolyl isomerase compare
AO353_22415 -1.4 -3.2 alcohol dehydrogenase compare
AO353_00620 -1.4 -2.1 cytochrome C oxidase Cbb3 compare
AO353_06320 -1.4 -3.1 AsnC family transcriptional regulator compare
AO353_18715 -1.4 -1.3 histidine kinase compare
AO353_27130 -1.4 -1.7 hypothetical protein compare
AO353_16195 -1.4 -1.4 DNA mismatch repair protein MutT compare
AO353_20095 -1.4 -3.9 histidine kinase compare
AO353_25335 -1.4 -1.7 malonate decarboxylase acyl carrier protein compare
AO353_05690 -1.4 -2.9 SsrA-binding protein compare
AO353_03525 -1.4 -6.2 quinolinate synthase A compare
AO353_02685 -1.4 -2.1 phosphoribosylglycinamide formyltransferase compare
AO353_12080 -1.3 -2.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
AO353_04185 -1.3 -4.4 DeoR family transcriptional regulator compare
AO353_16450 -1.3 -7.4 protein-PII uridylyltransferase compare
AO353_08265 -1.3 -4.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_25885 -1.3 -3.4 sugar ABC transporter permease compare
AO353_14740 -1.3 -2.9 GTP-binding protein compare
AO353_22215 -1.3 -2.3 hypothetical protein compare
AO353_03815 -1.3 -1.7 heme utilization protein compare
AO353_07325 -1.3 -1.7 diadenosine tetraphosphatase compare
AO353_04055 -1.3 -1.7 methionine--tRNA ligase compare
AO353_14940 -1.3 -2.7 malate:quinone oxidoreductase compare
AO353_08600 -1.3 -2.7 TetR family transcriptional regulator compare
AO353_00895 -1.3 -4.9 2-methylcitrate synthase compare
AO353_28945 -1.3 -2.2 potassium-transporting ATPase subunit B compare
AO353_20585 -1.3 -2.6 TetR family transcriptional regulator compare
AO353_20340 -1.3 -2.9 gamma-carboxygeranoyl-CoA hydratase compare
AO353_16805 -1.3 -4.0 recombinase RecA compare
AO353_19000 -1.2 -1.4 ABC transporter compare
AO353_13245 -1.2 -5.6 hypothetical protein compare
AO353_11770 -1.2 -1.2 molecular chaperone Hsp33 compare
AO353_20630 -1.2 -5.6 SAM-dependent methyltransferase compare
AO353_03795 -1.2 -3.2 fumarate hydratase compare
AO353_04965 -1.2 -3.2 D-erythro-7,8-dihydroneopterin triphosphate epimerase compare
AO353_10510 -1.2 -1.6 benzoate transporter compare
AO353_25585 -1.2 -1.3 argininosuccinate lyase compare
AO353_16845 -1.2 -5.1 LysR family transcriptional regulator compare
AO353_01780 -1.2 -6.3 heat-shock protein Hsp90 compare
AO353_04220 -1.2 -3.8 chemotaxis protein CheY compare
AO353_14935 -1.2 -2.5 aminopeptidase compare
AO353_13640 -1.2 -3.0 histidine kinase compare
AO353_05150 -1.2 -3.1 ABC transporter ATP-binding protein compare
AO353_23730 -1.2 -1.9 hypothetical protein compare
AO353_14420 -1.2 -3.1 molecular chaperone DnaK compare
AO353_22375 -1.2 -2.5 cytochrome c-550 PedF compare
AO353_12880 -1.2 -1.7 ADP-heptose--LPS heptosyltransferase compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source D-Alanine in Pseudomonas fluorescens FW300-N2E3

For carbon source D-Alanine across organisms