Experiment set5IT008 for Pseudomonas fluorescens FW300-N2E3

Compare to:

D-Alanine carbon source

200 most detrimental genes:

  gene name fitness t score description  
AO353_09945 +1.2 5.3 LysR family transcriptional regulator compare
AO353_22810 +1.1 2.1 hypothetical protein compare
AO353_07610 +1.1 1.3 hypothetical protein compare
AO353_03840 +1.0 3.1 ABC transporter ATP-binding protein compare
AO353_01685 +1.0 1.9 hypothetical protein compare
AO353_02520 +1.0 2.0 sodium transporter compare
AO353_19280 +1.0 1.7 hypothetical protein compare
AO353_29280 +1.0 2.9 hypothetical protein compare
AO353_28815 +0.9 2.6 hypothetical protein compare
AO353_21750 +0.9 1.9 peptidylprolyl isomerase compare
AO353_17520 +0.9 3.0 hypothetical protein compare
AO353_25925 +0.9 1.3 hypothetical protein compare
AO353_18560 +0.9 2.0 class I peptide chain release factor compare
AO353_24340 +0.9 1.2 TetR family transcriptional regulator compare
AO353_10990 +0.8 5.1 glutamate:protein symporter compare
AO353_26245 +0.8 3.7 phage head morphogenesis protein compare
AO353_12345 +0.8 1.4 twin-arginine protein translocation system subunit TatC compare
AO353_09770 +0.8 2.7 hypothetical protein compare
AO353_17850 +0.8 2.2 SAM-dependent methyltransferase compare
AO353_06100 +0.8 1.9 thymidylate synthase compare
AO353_07645 +0.8 1.1 sarcosine oxidase subunit gamma compare
AO353_09660 +0.8 1.2 hypothetical protein compare
AO353_16710 +0.8 2.3 hypothetical protein compare
AO353_06540 +0.8 1.8 hypothetical protein compare
AO353_14970 +0.8 2.9 hypothetical protein compare
AO353_21935 +0.7 1.4 nitrite reductase compare
AO353_11180 +0.7 6.8 large adhesive protein compare
AO353_26055 +0.7 1.9 hypothetical protein compare
AO353_15900 +0.7 1.4 GTP-binding protein compare
AO353_26620 +0.7 2.5 ArsR family transcriptional regulator compare
AO353_26240 +0.7 1.8 hypothetical protein compare
AO353_17085 +0.7 1.9 hypothetical protein compare
AO353_27500 +0.7 1.6 hypothetical protein compare
AO353_14860 +0.7 1.9 hypoxanthine-guanine phosphoribosyltransferase compare
AO353_15410 +0.7 1.5 hypothetical protein compare
AO353_03710 +0.7 1.7 formyltetrahydrofolate deformylase compare
AO353_04035 +0.7 2.5 exclusion suppressor FxsA compare
AO353_11190 +0.7 5.4 ABC transporter compare
AO353_04065 +0.7 2.2 electron transporter RnfB compare
AO353_22025 +0.7 1.3 iron-sulfur cluster repair di-iron protein compare
AO353_23410 +0.7 1.5 hypothetical protein compare
AO353_12245 +0.7 2.4 hypothetical protein compare
AO353_13395 +0.7 1.8 protein hupE compare
AO353_21830 +0.7 5.2 chemotaxis protein CheY compare
AO353_02735 +0.6 5.7 chemotaxis protein CheY compare
AO353_24990 +0.6 2.1 translation elongation factor compare
AO353_22915 +0.6 2.7 oxidoreductase compare
AO353_26390 +0.6 1.7 glyoxalase compare
AO353_08440 +0.6 1.5 hypothetical protein compare
AO353_03830 +0.6 1.8 antibiotic biosynthesis monooxygenase compare
AO353_11195 +0.6 5.1 hemolysin secretion protein D compare
AO353_13925 +0.6 1.3 XRE family transcriptional regulator compare
AO353_01705 +0.6 1.6 alpha/beta hydrolase compare
AO353_21110 +0.6 1.3 hypothetical protein compare
AO353_15875 +0.6 2.4 23S rRNA (adenine(2503)-C2)-methyltransferase compare
AO353_00105 +0.6 1.4 hypothetical protein compare
AO353_18505 +0.6 1.2 translation initiation factor 2 compare
AO353_09525 +0.6 2.9 ABC transporter ATP-binding protein compare
AO353_10780 +0.6 1.1 DNA-binding protein compare
AO353_09775 +0.6 1.4 hypothetical protein compare
AO353_13530 +0.6 2.0 ABC transporter ATP-binding protein compare
AO353_21400 +0.6 1.4 conjugal transfer protein TraR compare
AO353_08875 +0.6 1.1 amino acid ABC transporter ATP-binding protein compare
AO353_09135 +0.6 1.1 cytochrome C compare
AO353_12535 +0.6 1.9 hypothetical protein compare
AO353_08645 +0.6 0.8 transporter compare
AO353_02220 +0.6 1.3 hypothetical protein compare
AO353_12225 +0.6 1.7 hypothetical protein compare
AO353_27905 +0.6 2.1 N-formylglutamate amidohydrolase compare
AO353_15075 +0.6 2.7 cysteine methyltransferase compare
AO353_15730 +0.6 1.7 hypothetical protein compare
AO353_20065 +0.6 2.0 hypothetical protein compare
AO353_11185 +0.6 4.4 channel protein TolC compare
AO353_01965 +0.6 1.5 competence protein ComEA compare
AO353_17880 +0.6 2.6 hypothetical protein compare
AO353_10730 +0.6 0.3 hypothetical protein compare
AO353_03115 +0.6 2.1 TetR family transcriptional regulator compare
AO353_06220 +0.6 2.0 IclR family transcriptional regulator compare
AO353_22195 +0.6 0.9 metal ABC transporter permease compare
AO353_27535 +0.6 1.5 3-hydroxybutyryl-CoA dehydrogenase compare
AO353_17540 +0.5 1.6 helicase compare
AO353_19210 +0.5 2.5 hypothetical protein compare
AO353_12570 +0.5 1.9 type II secretion system protein GspI compare
AO353_12020 +0.5 1.5 hypothetical protein compare
AO353_12575 +0.5 1.7 type II secretion system protein GspJ compare
AO353_12765 +0.5 1.4 transcriptional regulator compare
AO353_22515 +0.5 2.4 poly-gamma-glutamate biosynthesis protein compare
AO353_22950 +0.5 1.9 universal stress protein UspA compare
AO353_21175 +0.5 1.2 hypothetical protein compare
AO353_08950 +0.5 1.9 hypothetical protein compare
AO353_21810 +0.5 2.3 alpha/beta hydrolase compare
AO353_06710 +0.5 0.7 riboflavin synthase subunit alpha compare
AO353_12580 +0.5 1.2 type II secretory protein PulK compare
AO353_28765 +0.5 2.2 hypothetical protein compare
AO353_29355 +0.5 1.6 hypothetical protein compare
AO353_12650 +0.5 0.7 hypothetical protein compare
AO353_01310 +0.5 2.0 radical SAM protein compare
AO353_06400 +0.5 2.1 hypothetical protein compare
AO353_21255 +0.5 1.6 ABC transporter ATP-binding protein compare
AO353_02860 +0.5 2.3 flagellar biosynthesis protein FlgB compare
AO353_09450 +0.5 1.6 type VI secretion protein compare
AO353_02775 +0.5 2.0 3-methyladenine DNA glycosylase compare
AO353_00185 +0.5 1.0 phage tail protein compare
AO353_23005 +0.5 1.5 hypothetical protein compare
AO353_27385 +0.5 2.0 hypothetical protein compare
AO353_04480 +0.5 1.8 NGG1p interacting factor NIF3 compare
AO353_07790 +0.5 1.9 ABC transporter for Carnitine, ATPase component (from data) compare
AO353_16980 +0.5 1.0 isochorismatase compare
AO353_12950 +0.5 2.9 polymerase compare
AO353_10925 +0.5 2.5 hypothetical protein compare
AO353_19250 +0.5 1.0 molybdenum cofactor guanylyltransferase compare
AO353_00660 +0.5 1.3 transcriptional regulator compare
AO353_13515 +0.5 1.7 Urease (EC 3.5.1.5) (from data) compare
AO353_19755 +0.5 1.7 cytosine deaminase compare
AO353_09440 +0.5 0.7 type VI secretion protein compare
AO353_11170 +0.5 3.3 hypothetical protein compare
AO353_04110 +0.5 1.5 hypothetical protein compare
AO353_07730 +0.5 1.5 hypothetical protein compare
AO353_24400 +0.5 1.3 ACP phosphodiesterase compare
AO353_25325 +0.5 2.0 biotin-independent malonate decarboxylase subunit gamma compare
AO353_15745 +0.5 2.3 hypothetical protein compare
AO353_08960 +0.5 1.4 peptidylprolyl isomerase compare
AO353_06810 +0.5 1.8 phage shock protein A compare
AO353_13830 +0.5 2.0 Flp pilus assembly protein CpaB compare
AO353_28115 +0.5 1.8 DNA glycosylase compare
AO353_20810 +0.5 1.1 hypothetical protein compare
AO353_05340 +0.5 1.8 histidine kinase compare
AO353_26385 +0.5 1.9 hypothetical protein compare
AO353_06670 +0.5 1.6 MFS transporter compare
AO353_27025 +0.5 1.8 2-nitropropane dioxygenase compare
AO353_27335 +0.5 1.2 hypothetical protein compare
AO353_17360 +0.5 2.4 amidase compare
AO353_17720 +0.5 1.6 ABC transporter substrate-binding protein compare
AO353_02300 +0.5 0.9 MarR family transcriptional regulator compare
AO353_10135 +0.5 1.9 zinc ABC transporter permease compare
AO353_06215 +0.5 2.1 oxidoreductase compare
AO353_17945 +0.5 1.0 cyclic nucleotide-binding protein compare
AO353_01075 +0.5 2.0 hypothetical protein compare
AO353_05270 +0.5 2.0 hypothetical protein compare
AO353_21485 +0.5 2.3 pyridine nucleotide-disulfide oxidoreductase compare
AO353_22780 +0.5 1.9 phosphoglycerate mutase compare
AO353_08620 +0.5 1.1 hypothetical protein compare
AO353_02425 +0.5 2.4 spermidine/putrescine ABC transporter ATP-binding protein compare
AO353_22955 +0.5 1.3 tRNA hydroxylase compare
AO353_11610 +0.5 1.4 glutamine ABC transporter ATP-binding protein compare
AO353_02205 +0.4 2.3 hypothetical protein compare
AO353_06170 +0.4 2.1 3-dehydroquinate dehydratase compare
AO353_22045 +0.4 1.6 molybdenum cofactor biosynthesis protein MoaA compare
AO353_01520 +0.4 1.6 hypothetical protein compare
AO353_09150 +0.4 1.1 cytochrome C2 compare
AO353_05535 +0.4 0.8 tRNA-Thr compare
AO353_22420 +0.4 1.6 histidine kinase compare
AO353_03410 +0.4 0.6 chemotaxis protein CheY compare
AO353_05130 +0.4 0.9 anti-anti-sigma factor compare
AO353_18370 +0.4 1.9 GntR family transcriptional regulator compare
AO353_13085 +0.4 1.6 histidine kinase compare
AO353_01390 +0.4 2.0 septum formation inhibitor Maf compare
AO353_11860 +0.4 1.8 Fis family transcriptional regulator compare
AO353_08435 +0.4 1.4 phosphatidylglycerophosphatase compare
AO353_02995 +0.4 2.3 succinylglutamate desuccinylase compare
AO353_03420 +0.4 1.6 phosphogluconate dehydratase compare
AO353_28235 +0.4 1.4 acetylornithine deacetylase compare
AO353_23215 +0.4 1.3 calpastatin compare
AO353_28385 +0.4 1.5 twitching motility protein PilT compare
AO353_22250 +0.4 1.5 NADPH-dependent FMN reductase compare
AO353_15825 +0.4 1.3 serine acetyltransferase compare
AO353_26335 +0.4 1.6 hypothetical protein compare
AO353_19395 +0.4 1.7 hypothetical protein compare
AO353_16765 +0.4 0.8 hypothetical protein compare
AO353_09495 +0.4 1.6 hypothetical protein compare
AO353_28450 +0.4 1.3 LysR family transcriptional regulator compare
AO353_21945 +0.4 1.0 protein nirL compare
AO353_19065 +0.4 2.0 transcription elongation factor GreAB compare
AO353_15450 +0.4 2.8 ubiquinol oxidase subunit II compare
AO353_23860 +0.4 1.5 xanthine permease XanP compare
AO353_01415 +0.4 1.9 molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
AO353_19325 +0.4 1.7 2,4-dienoyl-CoA reductase compare
AO353_00165 +0.4 1.7 lysis protein compare
AO353_00250 +0.4 1.0 hypothetical protein compare
AO353_04900 +0.4 2.2 energy transducer TonB compare
AO353_19340 +0.4 3.2 amino acid ABC transporter substrate-binding protein compare
AO353_28535 +0.4 1.5 AraC family transcriptional regulator compare
AO353_04410 +0.4 1.1 phosphoribosylglycinamide formyltransferase compare
AO353_28870 +0.4 2.0 hypothetical protein compare
AO353_25965 +0.4 1.5 hypothetical protein compare
AO353_02470 +0.4 1.6 Cro/Cl family transcriptional regulator compare
AO353_01275 +0.4 1.3 hypothetical protein compare
AO353_10785 +0.4 2.2 protein tyrosine phosphatase compare
AO353_24960 +0.4 2.1 sulfate ABC transporter substrate-binding protein compare
AO353_01490 +0.4 2.5 glutathione S-transferase compare
AO353_20210 +0.4 2.4 AraC family transcriptional regulator compare
AO353_20075 +0.4 1.9 thiamine biosynthesis protein ApbE compare
AO353_00580 +0.4 2.3 alpha/beta hydrolase compare
AO353_26100 +0.4 0.7 lysozyme compare
AO353_12665 +0.4 0.8 glycosyl transferase compare
AO353_24790 +0.4 1.7 Cro/Cl family transcriptional regulator compare
AO353_07625 +0.4 1.3 RNA polymerase subunit sigma-70 compare
AO353_07535 +0.4 1.3 ModE family transcriptional regulator compare
AO353_11635 +0.4 1.1 ABC transporter compare
AO353_18600 +0.4 0.9 flagellar basal-body rod protein FlgG compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source D-Alanine in Pseudomonas fluorescens FW300-N2E3

For carbon source D-Alanine across organisms