Experiment set5IT007 for Pseudomonas fluorescens FW300-N2E3

Compare to:

D-Serine carbon source

200 most important genes:

  gene name fitness t score description  
AO353_20620 -4.3 -5.9 isopropylmalate isomerase compare
AO353_20665 -4.2 -7.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_07230 -4.2 -8.5 anthranilate synthase compare
AO353_12520 -4.1 -6.9 glutamate synthase compare
AO353_20625 -4.1 -2.8 3-isopropylmalate dehydratase compare
AO353_05115 -4.1 -7.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_07220 -4.1 -4.9 anthranilate synthase compare
AO353_12085 -4.1 -4.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_07210 -4.0 -2.8 indole-3-glycerol-phosphate synthase compare
AO353_25215 -4.0 -5.4 transcriptional regulator conserved
AO353_10670 -3.9 -5.9 shikimate dehydrogenase compare
AO353_07510 -3.9 -7.8 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_12515 -3.8 -15.8 glutamate synthase compare
AO353_12070 -3.8 -6.3 imidazoleglycerol-phosphate dehydratase compare
AO353_22800 -3.8 -2.6 sulfite reductase compare
AO353_20540 -3.8 -6.3 aromatic amino acid aminotransferase compare
AO353_14505 -3.7 -8.7 ketol-acid reductoisomerase compare
AO353_07515 -3.7 -2.6 transporter compare
AO353_25210 -3.7 -8.3 D-serine ammonia-lyase (EC 4.3.1.18) (from data) conserved
AO353_08185 -3.7 -7.0 methionine biosynthesis protein MetW compare
AO353_07525 -3.7 -10.6 biotin synthase compare
AO353_10025 -3.7 -9.7 pyruvate carboxylase subunit B compare
AO353_20635 -3.6 -10.2 3-isopropylmalate dehydrogenase compare
AO353_07520 -3.6 -9.9 8-amino-7-oxononanoate synthase compare
AO353_10030 -3.6 -6.5 pyruvate carboxylase subunit A compare
AO353_08345 -3.6 -5.5 dihydroxy-acid dehydratase compare
AO353_02070 -3.5 -4.8 prephenate dehydratase compare
AO353_20695 -3.5 -5.8 O-succinylhomoserine sulfhydrylase compare
AO353_08475 -3.5 -7.5 phosphoserine phosphatase compare
AO353_07505 -3.5 -6.7 dethiobiotin synthetase compare
AO353_15925 -3.4 -11.3 2-isopropylmalate synthase compare
AO353_12360 -3.4 -6.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_13070 -3.4 -7.2 phosphoserine phosphatase compare
AO353_08180 -3.4 -9.5 homoserine O-acetyltransferase compare
AO353_14495 -3.3 -6.8 acetolactate synthase 3 catalytic subunit compare
AO353_00430 -3.3 -3.9 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_02710 -3.3 -8.0 (p)ppGpp synthetase compare
AO353_13165 -3.3 -5.0 ATP phosphoribosyltransferase regulatory subunit compare
AO353_08045 -3.3 -11.8 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_05110 -3.3 -8.7 histidinol dehydrogenase compare
AO353_02075 -3.2 -9.1 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_14220 -3.2 -2.2 ribosomal large subunit pseudouridine synthase D compare
AO353_12350 -3.2 -3.8 preprotein translocase compare
AO353_10035 -3.2 -8.2 LysR family transcriptional regulator compare
AO353_09915 -3.1 -7.3 long-chain acyl-CoA thioester hydrolase compare
AO353_12075 -3.1 -6.6 imidazole glycerol phosphate synthase subunit HisH compare
AO353_09000 -3.1 -3.0 argininosuccinate lyase compare
AO353_12090 -3.1 -2.1 imidazole glycerol phosphate synthase subunit HisF compare
AO353_04155 -3.0 -9.9 ornithine carbamoyltransferase compare
AO353_08780 -3.0 -6.4 5-formyltetrahydrofolate cyclo-ligase compare
AO353_19060 -3.0 -4.1 CysB family transcriptional regulator compare
AO353_07215 -3.0 -6.4 anthranilate phosphoribosyltransferase compare
AO353_08165 -3.0 -2.0 pyrroline-5-carboxylate reductase compare
AO353_14370 -3.0 -6.3 glucose-6-phosphate isomerase compare
AO353_09285 -2.9 -9.2 reactive intermediate/imine deaminase compare
AO353_08685 -2.9 -5.6 N-acetylglutamate synthase compare
AO353_03020 -2.9 -7.2 arginine N-succinyltransferase compare
AO353_12500 -2.9 -2.0 shikimate kinase compare
AO353_19360 -2.9 -3.4 peroxiredoxin compare
AO353_07155 -2.9 -4.8 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_04105 -2.8 -6.2 argininosuccinate synthase compare
AO353_05105 -2.8 -8.9 histidinol-phosphate aminotransferase compare
AO353_13640 -2.8 -3.3 histidine kinase compare
AO353_14595 -2.8 -7.9 carbonate dehydratase compare
AO353_25205 -2.7 -9.2 permease DsdX conserved
AO353_05125 -2.7 -4.5 BolA family transcriptional regulator compare
AO353_08510 -2.7 -4.8 3-phosphoglycerate dehydrogenase compare
AO353_14500 -2.7 -5.9 acetolactate synthase 3 regulatory subunit compare
AO353_10945 -2.6 -3.1 cytochrome C compare
AO353_12365 -2.6 -4.0 phosphoribosyl-AMP cyclohydrolase compare
AO353_02975 -2.6 -3.1 aspartate kinase compare
AO353_01375 -2.6 -6.6 phosphate acyltransferase compare
AO353_12145 -2.6 -3.9 nitrogen regulation protein NR(I) compare
AO353_14115 -2.6 -5.7 gamma-glutamyl kinase compare
AO353_10710 -2.5 -3.5 tryptophan synthase subunit beta compare
AO353_03580 -2.5 -3.0 ATP-dependent DNA helicase RuvB compare
AO353_08015 -2.5 -5.8 5,10-methylenetetrahydrofolate reductase compare
AO353_02720 -2.5 -5.8 cysteine synthase compare
AO353_12115 -2.5 -2.4 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_00105 -2.4 -2.4 hypothetical protein compare
AO353_18540 -2.4 -2.3 pseudouridine synthase compare
AO353_14400 -2.4 -4.0 Fis family transcriptional regulator compare
AO353_06495 -2.4 -5.1 gamma-glutamyl phosphate reductase compare
AO353_02685 -2.4 -3.3 phosphoribosylglycinamide formyltransferase compare
AO353_10705 -2.4 -3.2 tryptophan synthase subunit alpha compare
AO353_05130 -2.4 -1.8 anti-anti-sigma factor compare
AO353_09890 -2.3 -3.6 phosphate ABC transporter ATP-binding protein compare
AO353_03525 -2.3 -8.4 quinolinate synthase A compare
AO353_21625 -2.3 -2.7 Fe/S biogenesis protein NfuA compare
AO353_16940 -2.2 -5.2 deoxycytidine triphosphate deaminase compare
AO353_06040 -2.2 -3.6 exodeoxyribonuclease V subunit alpha compare
AO353_05280 -2.1 -2.5 4-carboxymuconolactone decarboxylase compare
AO353_00825 -2.1 -3.5 porin compare
AO353_10445 -2.1 -2.0 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_03795 -2.1 -3.8 fumarate hydratase compare
AO353_04355 -2.1 -2.0 homoserine dehydrogenase compare
AO353_05520 -2.1 -5.1 nicotinate-nucleotide pyrophosphorylase compare
AO353_03615 -2.0 -2.8 cold-shock protein compare
AO353_26945 -2.0 -2.7 transcriptional regulator compare
AO353_20175 -2.0 -3.0 ATP-dependent Clp protease proteolytic subunit compare
AO353_00865 -2.0 -8.2 phosphoenolpyruvate synthase compare
AO353_06320 -2.0 -4.0 AsnC family transcriptional regulator compare
AO353_11775 -2.0 -5.8 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_06050 -1.9 -5.3 exodeoxyribonuclease V subunit gamma compare
AO353_14775 -1.9 -5.3 hypothetical protein compare
AO353_14150 -1.9 -1.8 peptidylprolyl isomerase compare
AO353_08470 -1.9 -3.9 RNA pyrophosphohydrolase compare
AO353_19770 -1.9 -2.1 peptidase compare
AO353_03590 -1.9 -3.4 crossover junction endodeoxyribonuclease RuvC compare
AO353_07325 -1.9 -1.8 diadenosine tetraphosphatase compare
AO353_07355 -1.9 -5.0 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_11770 -1.8 -1.3 molecular chaperone Hsp33 compare
AO353_12105 -1.8 -5.1 peptidase S41 compare
AO353_06455 -1.8 -2.3 D-alanyl-D-alanine carboxypeptidase compare
AO353_23495 -1.8 -1.8 SAM-dependent methyltransferase compare
AO353_00620 -1.8 -2.1 cytochrome C oxidase Cbb3 compare
AO353_15185 -1.8 -3.9 ATPase compare
AO353_00750 -1.7 -3.2 GntR family transcriptional regulator compare
AO353_14420 -1.7 -3.6 molecular chaperone DnaK compare
AO353_04565 -1.7 -4.6 nucleoid-associated protein compare
AO353_11165 -1.7 -6.6 hypothetical protein compare
AO353_06045 -1.7 -5.7 exodeoxyribonuclease V subunit beta compare
AO353_09240 -1.7 -2.3 acetylglutamate kinase compare
AO353_02940 -1.6 -2.9 DNA-binding protein compare
AO353_03585 -1.6 -2.2 ATP-dependent DNA helicase RuvA compare
AO353_11850 -1.6 -3.6 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_07075 -1.6 -4.2 elongation factor Tu compare
AO353_02220 -1.6 -1.9 hypothetical protein compare
AO353_15555 -1.6 -3.3 fumarylacetoacetase compare
AO353_12665 -1.6 -2.1 glycosyl transferase compare
AO353_13225 -1.6 -2.6 50S ribosomal protein L9 compare
AO353_09040 -1.5 -1.5 diaminopimelate epimerase compare
AO353_03015 -1.5 -3.8 arginine N-succinyltransferase compare
AO353_20265 -1.5 -2.1 spore coat protein compare
AO353_20565 -1.5 -1.5 tRNA-Ala compare
AO353_05080 -1.5 -7.3 sulfate adenylyltransferase compare
AO353_05075 -1.5 -6.7 adenylylsulfate kinase compare
AO353_08885 -1.5 -9.6 polyphosphate kinase compare
AO353_10055 -1.5 -7.7 DNA helicase II compare
AO353_10435 -1.5 -6.2 chromosome partitioning protein compare
AO353_19760 -1.5 -2.5 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
AO353_12150 -1.4 -3.4 histidine kinase compare
AO353_21630 -1.4 -1.9 precorrin-4 C11-methyltransferase compare
AO353_17160 -1.4 -1.4 aspartate-semialdehyde dehydrogenase compare
AO353_04240 -1.4 -1.8 chemotaxis protein CheW compare
AO353_14940 -1.4 -2.9 malate:quinone oxidoreductase compare
AO353_00890 -1.4 -3.9 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
AO353_28425 -1.4 -2.5 TetR family transcriptional regulator compare
AO353_19750 -1.4 -1.6 diaminopimelate epimerase compare
AO353_16810 -1.4 -3.0 recombinase RecX compare
AO353_27090 -1.4 -1.3 hypothetical protein compare
AO353_16805 -1.4 -4.3 recombinase RecA compare
AO353_09045 -1.4 -1.8 hypothetical protein compare
AO353_02625 -1.4 -6.3 cobalamin biosynthesis protein CobD compare
AO353_07610 -1.3 -1.2 hypothetical protein compare
AO353_02970 -1.3 -1.9 carbon storage regulator compare
AO353_00310 -1.3 -6.0 transaldolase compare
AO353_00490 -1.3 -2.0 PasA protein compare
AO353_09050 -1.3 -2.7 recombinase XerC compare
AO353_26080 -1.3 -1.0 hypothetical protein compare
AO353_01780 -1.3 -6.7 heat-shock protein Hsp90 compare
AO353_00760 -1.3 -2.3 hypothetical protein compare
AO353_20370 -1.3 -1.8 MerR family transcriptional regulator compare
AO353_18135 -1.3 -1.8 hypothetical protein compare
AO353_04055 -1.3 -1.7 methionine--tRNA ligase compare
AO353_13140 -1.3 -3.9 tRNA dimethylallyltransferase compare
AO353_12795 -1.3 -2.7 ZapA compare
AO353_09250 -1.3 -1.9 exodeoxyribonuclease III compare
AO353_00495 -1.3 -1.8 DNA topoisomerase I compare
AO353_27000 -1.3 -1.7 hypothetical protein compare
AO353_08600 -1.3 -2.4 TetR family transcriptional regulator compare
AO353_13620 -1.3 -6.0 precorrin-3B C17-methyltransferase compare
AO353_20630 -1.2 -5.9 SAM-dependent methyltransferase compare
AO353_24130 -1.2 -1.6 hypothetical protein compare
AO353_14930 -1.2 -2.0 GntR family transcriptional regulator compare
AO353_20660 -1.2 -2.9 pseudouridine synthase compare
AO353_25315 -1.2 -2.8 malonate decarboxylase subunit epsilon compare
AO353_22120 -1.2 -2.9 cyclic pyranopterin phosphate synthase MoaA compare
AO353_14340 -1.2 -2.8 phospholipid-binding protein compare
AO353_06720 -1.2 -1.5 NrdR family transcriptional regulator compare
AO353_24915 -1.2 -1.7 hypothetical protein compare
AO353_01035 -1.2 -2.7 hypothetical protein compare
AO353_16195 -1.2 -1.2 DNA mismatch repair protein MutT compare
AO353_08880 -1.2 -1.8 exopolyphosphatase compare
AO353_14405 -1.2 -7.0 ATPase compare
AO353_16530 -1.2 -1.4 ribonuclease HII compare
AO353_23245 -1.2 -2.0 DNA-3-methyladenine glycosylase compare
AO353_13200 -1.2 -6.2 exoribonuclease R compare
AO353_02250 -1.2 -2.1 chorismate synthase compare
AO353_19145 -1.2 -2.9 protease HtpX compare
AO353_27650 -1.1 -2.5 cell division protein FtsK compare
AO353_12240 -1.1 -3.3 histidine utilization repressor compare
AO353_12535 -1.1 -2.5 hypothetical protein compare
AO353_13590 -1.1 -3.6 cobalt-precorrin-6X reductase compare
AO353_03365 -1.1 -5.0 transcriptional regulator compare
AO353_27720 -1.1 -2.8 cupin compare
AO353_13395 -1.1 -1.8 protein hupE compare
AO353_23350 -1.1 -2.4 hypothetical protein compare
AO353_21615 -1.1 -6.2 methionine synthase compare
AO353_02060 -1.1 -2.0 3-phosphoshikimate 1-carboxyvinyltransferase compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source D-Serine in Pseudomonas fluorescens FW300-N2E3

For carbon source D-Serine across organisms