Experiment set5IT007 for Pseudomonas fluorescens FW300-N1B4

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Cytidine nitrogen source

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_1408 -3.2 -2.2 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_1610 -2.7 -4.0 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf1N1B4_1624 -2.7 -3.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_2880 -2.6 -6.8 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_1434 -2.6 -5.4 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_1627 -2.5 -2.9 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_2547 -2.5 -1.7 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_6 -2.5 -1.7 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_2338 -2.5 -3.8 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_1534 -2.4 -10.0 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_1307 -2.4 -2.3 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_2303 -2.4 -7.9 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_5665 -2.4 -4.2 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_2548 -2.3 -3.8 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_1831 -2.3 -6.3 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_1837 -2.3 -2.1 Osmotically inducible protein C compare
Pf1N1B4_1611 -2.3 -4.5 Nitrogen regulation protein NR(I) compare
Pf1N1B4_1626 -2.3 -5.0 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_12 -2.2 -5.2 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_2384 -2.2 -6.8 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_2549 -2.2 -6.0 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_3855 -2.2 -2.8 Chromosome partition protein smc compare
Pf1N1B4_2112 -2.2 -9.8 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_106 -2.2 -3.9 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_1625 -2.1 -4.3 FIG00956267: hypothetical protein compare
Pf1N1B4_5666 -2.1 -2.6 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_742 -2.1 -3.8 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_3833 -2.1 -5.5 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_58 -2.0 -4.6 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_1668 -2.0 -3.6 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf1N1B4_2545 -2.0 -6.2 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_15 -2.0 -2.4 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_1830 -1.9 -5.1 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_5330 -1.9 -1.7 hypothetical protein compare
Pf1N1B4_2337 -1.9 -3.8 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_2949 -1.9 -2.2 FIG00956396: hypothetical protein compare
Pf1N1B4_3518 -1.9 -2.3 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_3081 -1.9 -12.4 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_1533 -1.9 -3.5 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_4065 -1.9 -5.4 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_1565 -1.9 -2.1 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_1067 -1.9 -3.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_3506 -1.8 -4.9 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_3553 -1.8 -4.6 Segregation and condensation protein A compare
Pf1N1B4_2879 -1.8 -4.2 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_327 -1.8 -2.4 hypothetical protein compare
Pf1N1B4_2010 -1.8 -4.5 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf1N1B4_5690 -1.8 -2.8 Putative TEGT family carrier/transport protein compare
Pf1N1B4_2272 -1.8 -1.7 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_6041 -1.8 -2.5 Carbon storage regulator compare
Pf1N1B4_419 -1.8 -1.6 Transcriptional regulator, TetR family compare
Pf1N1B4_2282 -1.8 -4.4 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_2005 -1.8 -2.1 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_4419 -1.7 -2.2 Organosulfonate utilization protein SsuF compare
Pf1N1B4_1566 -1.7 -6.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_3811 -1.7 -2.5 Hydantoin racemase (EC 5.1.99.-) compare
Pf1N1B4_4957 -1.7 -2.0 Transcriptional regulator, TetR family compare
Pf1N1B4_4611 -1.7 -2.1 GlpG protein (membrane protein of glp regulon) compare
Pf1N1B4_4839 -1.6 -2.1 lipoprotein compare
Pf1N1B4_762 -1.6 -3.6 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_1315 -1.6 -4.7 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_49 -1.6 -2.4 hypothetical protein compare
Pf1N1B4_350 -1.6 -4.4 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_3713 -1.6 -1.8 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) compare
Pf1N1B4_2011 -1.6 -5.7 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf1N1B4_2009 -1.6 -2.8 LysR family transcriptional regulator PA5437 compare
Pf1N1B4_2284 -1.6 -3.1 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf1N1B4_2208 -1.6 -4.3 Polyphosphate kinase (EC 2.7.4.1) compare
Pf1N1B4_3812 -1.6 -5.5 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_4810 -1.5 -3.0 Polymyxin resistance protein PmrM compare
Pf1N1B4_847 -1.5 -5.2 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_1317 -1.5 -1.7 Sensor histidine kinase/response regulator compare
Pf1N1B4_2004 -1.5 -1.9 putative membrane protein compare
Pf1N1B4_1608 -1.5 -2.2 FIG00956533: hypothetical protein compare
Pf1N1B4_2917 -1.5 -5.0 FIG140336: TPR domain protein compare
Pf1N1B4_4822 -1.5 -2.1 Paraquat-inducible protein A compare
Pf1N1B4_1 -1.5 -1.8 Colicin V production protein compare
Pf1N1B4_114 -1.5 -2.1 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf1N1B4_2263 -1.5 -3.1 Putrescine transport system permease protein PotI (TC 3.A.1.11.2) compare
Pf1N1B4_4446 -1.5 -2.0 DNA topoisomerase III (EC 5.99.1.2) compare
Pf1N1B4_2878 -1.5 -4.6 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_2167 -1.5 -4.2 Ammonium transporter compare
Pf1N1B4_1239 -1.4 -4.6 Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18) compare
Pf1N1B4_1619 -1.4 -5.2 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf1N1B4_1535 -1.4 -2.4 hypothetical protein compare
Pf1N1B4_2487 -1.4 -3.9 Biotin synthase (EC 2.8.1.6) compare
Pf1N1B4_952 -1.4 -2.5 Cell division protein MraZ compare
Pf1N1B4_5219 -1.4 -2.4 tRNA-Gly-CCC compare
Pf1N1B4_4517 -1.4 -2.3 Dihydropyrimidinase (EC 3.5.2.2) compare
Pf1N1B4_3697 -1.4 -4.9 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf1N1B4_5817 -1.4 -1.4 Decarboxylase family protein compare
Pf1N1B4_4921 -1.4 -2.1 Haloacid dehalogenase, type II compare
Pf1N1B4_2105 -1.4 -1.5 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_384 -1.4 -1.7 proteinase inhibitor compare
Pf1N1B4_3504 -1.4 -2.6 Two-component sensor histidine kinase PfeS, enterobactin compare
Pf1N1B4_3129 -1.4 -1.7 Prophage baseplate assembly protein V compare
Pf1N1B4_1906 -1.3 -2.3 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_5151 -1.3 -2.5 FIG002283: Isochorismatase family protein compare
Pf1N1B4_932 -1.3 -1.5 FIG00963370: hypothetical protein compare
Pf1N1B4_2858 -1.3 -6.0 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_5675 -1.3 -2.5 hypothetical protein compare
Pf1N1B4_4385 -1.3 -2.3 Gfa-like protein compare
Pf1N1B4_1113 -1.3 -3.6 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf1N1B4_1250 -1.3 -4.7 Nucleoside ABC transporter, periplasmic nucleoside-binding protein compare
Pf1N1B4_3552 -1.3 -2.5 Hypothetical YciO protein, TsaC/YrdC paralog compare
Pf1N1B4_2352 -1.3 -3.1 Glutathione synthetase (EC 6.3.2.3) compare
Pf1N1B4_2674 -1.3 -1.5 hypothetical protein compare
Pf1N1B4_203 -1.3 -2.8 ABC transporter in pyoverdin gene cluster, periplasmic component compare
Pf1N1B4_2711 -1.3 -2.1 Phosphate starvation-inducible protein PhoH, predicted ATPase compare
Pf1N1B4_2912 -1.3 -1.6 GTP-binding and nucleic acid-binding protein YchF compare
Pf1N1B4_751 -1.3 -1.4 hypothetical protein compare
Pf1N1B4_1544 -1.2 -4.0 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_2269 -1.2 -2.2 Purine nucleoside phosphorylase (EC 2.4.2.1) compare
Pf1N1B4_5576 -1.2 -2.0 hypothetical protein compare
Pf1N1B4_5346 -1.2 -2.6 hypothetical protein compare
Pf1N1B4_3729 -1.2 -1.8 Quaternary ammonium compound-resistance protein SugE compare
Pf1N1B4_2280 -1.2 -4.5 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_4474 -1.2 -1.9 transcription regulator protein compare
Pf1N1B4_2739 -1.2 -1.6 acetyltransferase, GNAT family compare
Pf1N1B4_4299 -1.2 -1.8 sensor histidine kinase compare
Pf1N1B4_2377 -1.2 -3.8 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf1N1B4_1866 -1.2 -2.2 Methionine ABC transporter ATP-binding protein compare
Pf1N1B4_4603 -1.1 -1.9 hypothetical protein compare
Pf1N1B4_1617 -1.1 -4.0 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_3508 -1.1 -3.1 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf1N1B4_4745 -1.1 -1.6 Transcriptional regulator, LysR family compare
Pf1N1B4_974 -1.1 -2.3 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf1N1B4_4569 -1.1 -1.8 DNA-3-methyladenine glycosylase II (EC 3.2.2.21) compare
Pf1N1B4_4849 -1.1 -1.5 Various polyols ABC transporter, permease component 1 compare
Pf1N1B4_4678 -1.1 -1.2 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) compare
Pf1N1B4_3191 -1.1 -1.6 FIG00953505: hypothetical protein compare
Pf1N1B4_2412 -1.1 -2.2 ATP-dependent 23S rRNA helicase DbpA compare
Pf1N1B4_197 -1.1 -1.7 FIG139991: Putative thiamine pyrophosphate-requiring enzyme compare
Pf1N1B4_430 -1.1 -1.6 hypothetical protein compare
Pf1N1B4_522 -1.1 -1.8 HlyD family secretion protein compare
Pf1N1B4_3742 -1.1 -1.4 Oxidoreductase, zinc-binding compare
Pf1N1B4_4460 -1.1 -1.9 Cytochrome b561 compare
Pf1N1B4_3818 -1.1 -1.6 Propionate catabolism operon transcriptional regulator of GntR family [predicted] compare
Pf1N1B4_2736 -1.1 -2.1 ATP-dependent RNA helicase PA3950 compare
Pf1N1B4_5891 -1.1 -2.1 FIG00961753: hypothetical protein compare
Pf1N1B4_875 -1.1 -1.7 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_2262 -1.1 -5.4 Lysine ABC transporter, permease component (from data) compare
Pf1N1B4_1391 -1.1 -3.1 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf1N1B4_4518 -1.1 -1.4 Possible pyrimidine permease in reductive pathway compare
Pf1N1B4_72 -1.0 -1.1 Transcriptional regulator, LysR family compare
Pf1N1B4_1279 -1.0 -1.5 Flp pilus assembly protein TadB compare
Pf1N1B4_1568 -1.0 -2.2 Twin-arginine translocation protein TatB compare
Pf1N1B4_3445 -1.0 -2.2 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf1N1B4_4023 -1.0 -1.9 hypothetical protein compare
Pf1N1B4_578 -1.0 -1.9 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_4582 -1.0 -1.6 hypothetical protein compare
Pf1N1B4_124 -1.0 -1.5 Mechanosensitive ion channel compare
Pf1N1B4_2464 -1.0 -1.7 Ribosomal protein S6 glutaminyl transferase compare
Pf1N1B4_4923 -1.0 -3.3 ABC-type dipeptide transport system, periplasmic component compare
Pf1N1B4_3134 -1.0 -1.3 probable tail fiber assembly-like protein compare
Pf1N1B4_2733 -1.0 -1.3 DNA polymerase III alpha subunit (EC 2.7.7.7) compare
Pf1N1B4_1056 -1.0 -2.1 FIG018329: 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Pf1N1B4_4667 -1.0 -2.0 Acriflavin resistance plasma membrane protein compare
Pf1N1B4_3549 -1.0 -1.5 YciL protein compare
Pf1N1B4_2525 -1.0 -4.2 Thiosulfate sulfurtransferase GlpE (EC 2.8.1.1) compare
Pf1N1B4_4723 -1.0 -1.6 UPF0141 membrane protein YijP possibly required for phosphoethanolamine modification of lipopolysaccharide compare
Pf1N1B4_1235 -1.0 -3.1 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf1N1B4_2491 -1.0 -2.3 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf1N1B4_4681 -1.0 -3.2 LmbE-like protein compare
Pf1N1B4_3143 -1.0 -1.6 RecA protein compare
Pf1N1B4_3234 -1.0 -2.2 Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) compare
Pf1N1B4_3368 -0.9 -1.4 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf1N1B4_5463 -0.9 -1.7 hypothetical protein compare
Pf1N1B4_298 -0.9 -1.5 Transcription elongation factor GreB compare
Pf1N1B4_5483 -0.9 -1.1 hypothetical protein compare
Pf1N1B4_27 -0.9 -2.1 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf1N1B4_3386 -0.9 -2.2 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf1N1B4_1936 -0.9 -2.6 Chromosome (plasmid) partitioning protein ParA compare
Pf1N1B4_3279 -0.9 -1.9 putative membrane protein compare
Pf1N1B4_4024 -0.9 -1.5 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_4355 -0.9 -1.6 Gamma-glutamyl-aminobutyraldehyde dehydrogenase (EC 1.2.1.-) compare
Pf1N1B4_2261 -0.9 -3.5 Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2) compare
Pf1N1B4_232 -0.9 -1.6 DNA-binding response regulator, LuxR family compare
Pf1N1B4_5688 -0.9 -2.7 hypothetical protein compare
Pf1N1B4_2189 -0.9 -1.5 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf1N1B4_1135 -0.9 -1.6 FIG00960055: hypothetical protein compare
Pf1N1B4_5447 -0.9 -1.5 hypothetical protein compare
Pf1N1B4_1653 -0.9 -3.3 Branched-chain amino acid transport protein AzlC compare
Pf1N1B4_2225 -0.9 -5.1 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Pf1N1B4_4860 -0.9 -1.7 Sensory box sensor histidine kinase/response regulator (EC 2.7.3.-) compare
Pf1N1B4_499 -0.9 -2.8 Similar to TadZ/CpaE, associated with Flp pilus assembly compare
Pf1N1B4_1346 -0.9 -1.5 Urea ABC transporter, ATPase protein UrtD compare
Pf1N1B4_2894 -0.9 -1.9 FIG00956317: hypothetical protein compare
Pf1N1B4_2144 -0.9 -4.0 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
Pf1N1B4_5894 -0.9 -2.2 Glycosyltransferase compare
Pf1N1B4_2234 -0.9 -2.5 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
Pf1N1B4_63 -0.9 -1.6 Phosphonoacetaldehyde phosphonohydrolase-related protein compare
Pf1N1B4_1094 -0.9 -1.1 FIG005080: Possible exported protein compare
Pf1N1B4_1819 -0.9 -1.9 NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) compare
Pf1N1B4_2490 -0.9 -2.9 Biotin synthesis protein BioC compare
Pf1N1B4_2488 -0.9 -3.5 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf1N1B4_5577 -0.9 -1.6 twitching motility protein PilG compare
Pf1N1B4_1901 -0.9 -2.3 Putative NADH-flavin reductase compare
Pf1N1B4_2873 -0.9 -2.1 hypothetical protein compare
Pf1N1B4_4866 -0.9 -1.6 hypothetical protein compare


Specific Phenotypes

For 5 genes in this experiment

For nitrogen source Cytidine in Pseudomonas fluorescens FW300-N1B4

For nitrogen source Cytidine across organisms