Experiment set5IT006 for Pseudomonas fluorescens FW300-N2E3

Compare to:

L-Tryptophan carbon source

200 most important genes:

  gene name fitness t score description  
AO353_12085 -4.3 -5.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_13070 -4.3 -6.5 phosphoserine phosphatase compare
AO353_12520 -4.1 -8.8 glutamate synthase compare
AO353_20620 -4.0 -6.7 isopropylmalate isomerase compare
AO353_21455 -3.9 -2.7 cation:proton antiporter compare
AO353_20695 -3.9 -5.9 O-succinylhomoserine sulfhydrylase compare
AO353_12070 -3.8 -7.3 imidazoleglycerol-phosphate dehydratase compare
AO353_05115 -3.8 -8.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_02070 -3.8 -4.5 prephenate dehydratase compare
AO353_08345 -3.7 -6.7 dihydroxy-acid dehydratase compare
AO353_09155 -3.7 -7.1 amino acid dehydrogenase compare
AO353_12515 -3.7 -17.7 glutamate synthase compare
AO353_23515 -3.7 -4.4 muconate cycloisomerase compare
AO353_12075 -3.7 -6.2 imidazole glycerol phosphate synthase subunit HisH compare
AO353_10025 -3.7 -11.9 pyruvate carboxylase subunit B compare
AO353_00495 -3.6 -2.5 DNA topoisomerase I compare
AO353_10035 -3.6 -8.6 LysR family transcriptional regulator compare
AO353_20635 -3.6 -10.7 3-isopropylmalate dehydrogenase compare
AO353_13165 -3.5 -5.4 ATP phosphoribosyltransferase regulatory subunit compare
AO353_08475 -3.5 -8.2 phosphoserine phosphatase compare
AO353_02075 -3.5 -9.3 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_08180 -3.5 -10.9 homoserine O-acetyltransferase compare
AO353_12365 -3.4 -4.1 phosphoribosyl-AMP cyclohydrolase compare
AO353_08885 -3.4 -15.7 polyphosphate kinase compare
AO353_10030 -3.4 -10.0 pyruvate carboxylase subunit A compare
AO353_14500 -3.3 -5.0 acetolactate synthase 3 regulatory subunit compare
AO353_05975 -3.3 -10.1 Kynurenine formamidase, bacterial (EC 3.5.1.9) (from data) conserved
AO353_12360 -3.3 -7.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_14505 -3.3 -10.6 ketol-acid reductoisomerase compare
AO353_05110 -3.2 -9.3 histidinol dehydrogenase compare
AO353_16425 -3.2 -2.5 Fe-S metabolism protein SufE compare
AO353_10670 -3.2 -7.4 shikimate dehydrogenase compare
AO353_04220 -3.2 -5.7 chemotaxis protein CheY compare
AO353_22800 -3.2 -3.1 sulfite reductase compare
AO353_12500 -3.1 -2.1 shikimate kinase compare
AO353_08685 -3.1 -6.6 N-acetylglutamate synthase compare
AO353_09040 -3.1 -3.0 diaminopimelate epimerase compare
AO353_20625 -3.1 -4.2 3-isopropylmalate dehydratase compare
AO353_08185 -3.1 -9.4 methionine biosynthesis protein MetW compare
AO353_14495 -3.0 -9.3 acetolactate synthase 3 catalytic subunit compare
AO353_05105 -3.0 -9.3 histidinol-phosphate aminotransferase compare
AO353_14775 -3.0 -5.3 hypothetical protein compare
AO353_02710 -3.0 -10.2 (p)ppGpp synthetase compare
AO353_17230 -3.0 -8.7 Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24) (from data) compare
AO353_08015 -3.0 -5.7 5,10-methylenetetrahydrofolate reductase compare
AO353_05970 -3.0 -6.6 Tryptophan 2,3-dioxygenase (EC 1.13.11.11) (from data) conserved
AO353_04155 -2.9 -10.5 ornithine carbamoyltransferase compare
AO353_05690 -2.9 -2.9 SsrA-binding protein compare
AO353_07155 -2.9 -5.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_22520 -2.8 -2.7 hypothetical protein compare
AO353_05935 -2.8 -11.2 Kynureninase (EC 3.7.1.3) (from data) conserved
AO353_05080 -2.8 -10.3 sulfate adenylyltransferase compare
AO353_20175 -2.8 -2.7 ATP-dependent Clp protease proteolytic subunit compare
AO353_19060 -2.8 -4.6 CysB family transcriptional regulator compare
AO353_04105 -2.7 -7.2 argininosuccinate synthase compare
AO353_24340 -2.7 -1.9 TetR family transcriptional regulator compare
AO353_14420 -2.7 -3.7 molecular chaperone DnaK compare
AO353_11775 -2.7 -7.2 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_05075 -2.7 -9.5 adenylylsulfate kinase compare
AO353_20540 -2.7 -7.0 aromatic amino acid aminotransferase compare
AO353_14115 -2.6 -6.1 gamma-glutamyl kinase compare
AO353_06495 -2.6 -5.8 gamma-glutamyl phosphate reductase compare
AO353_14595 -2.6 -8.3 carbonate dehydratase compare
AO353_09160 -2.6 -11.4 AsnC family transcriptional regulator conserved
AO353_00430 -2.6 -3.9 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_14400 -2.6 -4.3 Fis family transcriptional regulator compare
AO353_05940 -2.6 -7.2 AsnC family transcriptional regulator conserved
AO353_00510 -2.6 -5.1 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_07495 -2.6 -14.9 acyl-CoA dehydrogenase compare
AO353_09000 -2.5 -5.1 argininosuccinate lyase compare
AO353_17200 -2.5 -6.0 3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6) (from data) conserved
AO353_05980 -2.5 -8.7 cupin compare
AO353_02940 -2.5 -3.1 DNA-binding protein compare
AO353_23525 -2.5 -6.1 Catechol 1,2-dioxygenase (EC 1.13.11.1) (from data) conserved
AO353_05550 -2.5 -5.8 pseudouridine synthase compare
AO353_08510 -2.5 -5.5 3-phosphoglycerate dehydrogenase compare
AO353_09885 -2.5 -2.9 transcriptional regulator PhoU compare
AO353_12090 -2.4 -2.4 imidazole glycerol phosphate synthase subunit HisF compare
AO353_15925 -2.4 -10.8 2-isopropylmalate synthase compare
AO353_11850 -2.4 -4.7 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_02280 -2.4 -1.8 DNA mismatch repair protein MutS compare
AO353_17205 -2.4 -2.9 beta-ketoadipyl CoA thiolase compare
AO353_17195 -2.4 -7.9 3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6) (from data) conserved
AO353_16940 -2.4 -4.5 deoxycytidine triphosphate deaminase compare
AO353_23520 -2.4 -4.7 muconolactone delta-isomerase compare
AO353_23285 -2.3 -3.1 hypothetical protein compare
AO353_00505 -2.3 -4.1 3-ketoacyl-CoA thiolase compare
AO353_14220 -2.3 -2.1 ribosomal large subunit pseudouridine synthase D compare
AO353_23400 -2.3 -2.7 hypothetical protein compare
AO353_14370 -2.3 -6.6 glucose-6-phosphate isomerase compare
AO353_08780 -2.2 -7.1 5-formyltetrahydrofolate cyclo-ligase compare
AO353_07895 -2.2 -3.1 fructose-bisphosphate aldolase compare
AO353_03585 -2.2 -3.0 ATP-dependent DNA helicase RuvA compare
AO353_08165 -2.2 -3.0 pyrroline-5-carboxylate reductase compare
AO353_09240 -2.2 -2.6 acetylglutamate kinase compare
AO353_22985 -2.2 -2.9 hypothetical protein compare
AO353_06045 -2.2 -6.4 exodeoxyribonuclease V subunit beta compare
AO353_22360 -2.2 -3.0 ABC transporter ATP-binding protein compare
AO353_07515 -2.2 -2.3 transporter compare
AO353_09770 -2.1 -4.0 hypothetical protein compare
AO353_07250 -2.1 -2.8 polyamine ABC transporter permease compare
AO353_26830 -2.1 -4.3 histidine kinase compare
AO353_22355 -2.1 -7.5 multidrug ABC transporter permease compare
AO353_03580 -2.1 -3.4 ATP-dependent DNA helicase RuvB compare
AO353_23165 -2.0 -3.3 cupin compare
AO353_23730 -2.0 -2.4 hypothetical protein compare
AO353_06040 -2.0 -3.6 exodeoxyribonuclease V subunit alpha compare
AO353_12115 -2.0 -2.7 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_02250 -2.0 -3.7 chorismate synthase compare
AO353_15385 -2.0 -2.7 hypothetical protein compare
AO353_17935 -1.9 -2.7 hypothetical protein compare
AO353_19090 -1.9 -2.1 MarR family transcriptional regulator compare
AO353_27685 -1.9 -4.4 cold-shock protein compare
AO353_18540 -1.9 -2.5 pseudouridine synthase compare
AO353_08465 -1.8 -9.9 phosphoenolpyruvate-protein phosphotransferase compare
AO353_02040 -1.8 -2.7 integration host factor subunit beta compare
AO353_11165 -1.8 -7.9 hypothetical protein compare
AO353_13420 -1.8 -1.8 hypothetical protein compare
AO353_26115 -1.8 -2.1 hypothetical protein compare
AO353_02580 -1.8 -12.0 Long-chain fatty acid transport protein compare
AO353_14990 -1.8 -2.2 hypothetical protein compare
AO353_07645 -1.8 -1.4 sarcosine oxidase subunit gamma compare
AO353_28960 -1.8 -2.9 Fis family transcriptional regulator compare
AO353_23510 -1.8 -3.7 transcriptional regulator compare
AO353_16765 -1.8 -2.7 hypothetical protein compare
AO353_05955 -1.8 -6.6 Anthranilate 1,2-dioxygenase (deaminating, decarboxylating) (EC 1.14.12.1) (from data) conserved
AO353_08245 -1.8 -2.6 cell division ATP-binding protein FtsE compare
AO353_03630 -1.8 -9.6 porin compare
AO353_07525 -1.8 -9.3 biotin synthase compare
AO353_15725 -1.8 -4.0 hypothetical protein compare
AO353_06050 -1.7 -5.8 exodeoxyribonuclease V subunit gamma compare
AO353_13140 -1.7 -4.6 tRNA dimethylallyltransferase compare
AO353_00825 -1.6 -3.3 porin compare
AO353_28990 -1.6 -5.1 LOG family protein compare
AO353_00750 -1.6 -3.7 GntR family transcriptional regulator compare
AO353_08115 -1.6 -5.5 energy transducer TonB compare
AO353_11530 -1.6 -7.0 diguanylate cyclase compare
AO353_08350 -1.6 -6.3 hypothetical protein compare
AO353_02550 -1.6 -2.8 TetR family transcriptional regulator compare
AO353_22385 -1.6 -8.4 dehydrogenase compare
AO353_16805 -1.6 -4.8 recombinase RecA compare
AO353_14405 -1.6 -9.1 ATPase compare
AO353_22380 -1.6 -4.8 amino acid ABC transporter substrate-binding protein compare
AO353_05520 -1.6 -4.7 nicotinate-nucleotide pyrophosphorylase compare
AO353_25945 -1.6 -2.7 hypothetical protein compare
AO353_27710 -1.5 -2.0 DNA repair protein compare
AO353_13640 -1.5 -3.5 histidine kinase compare
AO353_27650 -1.5 -3.6 cell division protein FtsK compare
AO353_12105 -1.5 -5.2 peptidase S41 compare
AO353_12460 -1.5 -6.4 malate dehydrogenase compare
AO353_26945 -1.5 -1.9 transcriptional regulator compare
AO353_02555 -1.5 -8.2 histidine kinase compare
AO353_20335 -1.5 -4.4 3-methylcrotonyl-CoA carboxylase compare
AO353_20170 -1.5 -4.3 trigger factor compare
AO353_07505 -1.5 -6.4 dethiobiotin synthetase compare
AO353_17855 -1.5 -2.6 ribonuclease D compare
AO353_18335 -1.5 -2.6 hypothetical protein compare
AO353_02515 -1.5 -5.1 recombination-associated protein RdgC compare
AO353_13245 -1.4 -6.3 hypothetical protein compare
AO353_20340 -1.4 -3.3 gamma-carboxygeranoyl-CoA hydratase compare
AO353_14740 -1.4 -3.0 GTP-binding protein compare
AO353_05960 -1.4 -8.4 anthranilate dioxygenase reductase conserved
AO353_00105 -1.4 -1.9 hypothetical protein compare
AO353_03020 -1.4 -5.8 arginine N-succinyltransferase compare
AO353_15170 -1.4 -2.4 cytochrome D ubiquinol oxidase subunit III compare
AO353_15785 -1.4 -5.3 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
AO353_03970 -1.4 -7.9 diguanylate cyclase compare
AO353_22370 -1.4 -2.8 branched-chain amino acid ABC transporter substrate-binding protein compare
AO353_08470 -1.4 -3.3 RNA pyrophosphohydrolase compare
AO353_05950 -1.4 -8.6 Anthranilate 1,2-dioxygenase (deaminating, decarboxylating) (EC 1.14.12.1) (from data) conserved
AO353_20285 -1.4 -3.8 molecular chaperone compare
AO353_21750 -1.4 -2.2 peptidylprolyl isomerase compare
AO353_19250 -1.4 -1.7 molybdenum cofactor guanylyltransferase compare
AO353_11340 -1.4 -1.6 MarR family transcriptional regulator compare
AO353_04055 -1.4 -1.6 methionine--tRNA ligase compare
AO353_01985 -1.4 -6.5 hypothetical protein compare
AO353_28495 -1.4 -2.8 hypothetical protein compare
AO353_02885 -1.3 -2.2 flagellar biosynthesis protein FlgN compare
AO353_26815 -1.3 -2.6 transcriptional regulator compare
AO353_17785 -1.3 -2.3 hypothetical protein compare
AO353_02005 -1.3 -1.1 hypothetical protein compare
AO353_07520 -1.3 -6.8 8-amino-7-oxononanoate synthase compare
AO353_01990 -1.3 -4.9 UDP-N-acetylglucosamine 2-epimerase compare
AO353_13515 -1.3 -2.6 Urease (EC 3.5.1.5) (from data) compare
AO353_00310 -1.3 -5.3 transaldolase compare
AO353_22415 -1.3 -2.7 alcohol dehydrogenase compare
AO353_19580 -1.3 -2.6 AraC family transcriptional regulator compare
AO353_21945 -1.3 -2.3 protein nirL compare
AO353_10455 -1.3 -1.5 tRNA modification GTPase MnmE compare
AO353_27090 -1.3 -1.9 hypothetical protein compare
AO353_03615 -1.3 -2.5 cold-shock protein compare
AO353_08265 -1.3 -4.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_17250 -1.3 -2.6 nitrile hydratase compare
AO353_28930 -1.3 -1.3 hypothetical protein compare
AO353_02810 -1.2 -5.0 histidine kinase compare
AO353_05945 -1.2 -4.8 AraC family transcriptional regulator compare
AO353_04650 -1.2 -2.3 molybdenum cofactor biosynthesis protein MoaE compare
AO353_10445 -1.2 -1.6 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_08170 -1.2 -2.9 hypothetical protein compare
AO353_03015 -1.2 -3.1 arginine N-succinyltransferase compare


Specific Phenotypes

For 17 genes in this experiment

For carbon source L-Tryptophan in Pseudomonas fluorescens FW300-N2E3

For carbon source L-Tryptophan across organisms