Experiment set5IT006 for Pseudomonas fluorescens FW300-N1B4

Compare to:

Uridine nitrogen source

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_1307 -3.1 -2.1 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_1610 -3.0 -4.0 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf1N1B4_5665 -2.9 -3.3 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_1408 -2.9 -2.7 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_3191 -2.8 -2.5 FIG00953505: hypothetical protein compare
Pf1N1B4_1611 -2.7 -4.6 Nitrogen regulation protein NR(I) compare
Pf1N1B4_2880 -2.7 -6.5 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_2338 -2.6 -5.2 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_1434 -2.6 -5.8 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_1626 -2.6 -2.5 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_2384 -2.5 -6.2 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_2337 -2.5 -3.4 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_327 -2.5 -2.8 hypothetical protein compare
Pf1N1B4_1534 -2.5 -10.7 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_4107 -2.4 -2.5 Probable glutathione S-transferase (EC 2.5.1.18), YfcF homolog compare
Pf1N1B4_1831 -2.4 -6.4 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_2303 -2.4 -9.0 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_5666 -2.4 -2.2 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_5675 -2.3 -3.4 hypothetical protein compare
Pf1N1B4_2549 -2.3 -6.3 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_2547 -2.3 -2.6 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_15 -2.3 -1.5 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_1624 -2.3 -4.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_1625 -2.2 -4.3 FIG00956267: hypothetical protein compare
Pf1N1B4_6 -2.2 -2.6 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_2282 -2.2 -5.4 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_3506 -2.2 -4.7 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_2208 -2.2 -4.6 Polyphosphate kinase (EC 2.7.4.1) compare
Pf1N1B4_12 -2.2 -4.1 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_716 -2.2 -3.3 Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites compare
Pf1N1B4_1830 -2.2 -5.1 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_1627 -2.2 -3.6 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_2545 -2.1 -6.3 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_2167 -2.1 -5.5 Ammonium transporter compare
Pf1N1B4_4515 -2.0 -2.6 Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2) compare
Pf1N1B4_2144 -2.0 -6.4 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
Pf1N1B4_4065 -2.0 -5.1 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_2112 -2.0 -10.0 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_4839 -2.0 -2.4 lipoprotein compare
Pf1N1B4_6041 -2.0 -2.5 Carbon storage regulator compare
Pf1N1B4_742 -2.0 -4.5 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_2272 -2.0 -1.3 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_1533 -2.0 -3.5 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_4870 -2.0 -2.0 Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16) compare
Pf1N1B4_58 -1.9 -4.3 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_2807 -1.9 -2.6 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf1N1B4_350 -1.9 -3.9 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_2879 -1.9 -4.2 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_2548 -1.9 -3.3 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_345 -1.9 -1.9 Integration host factor beta subunit compare
Pf1N1B4_4860 -1.9 -2.8 Sensory box sensor histidine kinase/response regulator (EC 2.7.3.-) compare
Pf1N1B4_4517 -1.8 -2.6 Dihydropyrimidinase (EC 3.5.2.2) compare
Pf1N1B4_629 -1.8 -2.5 Queuosine Biosynthesis QueE Radical SAM compare
Pf1N1B4_1906 -1.8 -1.7 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_4299 -1.8 -2.5 sensor histidine kinase compare
Pf1N1B4_2284 -1.8 -3.1 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf1N1B4_847 -1.8 -5.6 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_5568 -1.8 -2.6 hypothetical protein compare
Pf1N1B4_1067 -1.8 -3.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_3081 -1.8 -12.5 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_3812 -1.8 -5.8 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_2011 -1.8 -6.1 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf1N1B4_5330 -1.8 -1.9 hypothetical protein compare
Pf1N1B4_3833 -1.8 -6.1 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_313 -1.7 -3.0 Potassium-transporting ATPase C chain (EC 3.6.3.12) (TC 3.A.3.7.1) compare
Pf1N1B4_1565 -1.7 -2.7 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_1837 -1.7 -1.6 Osmotically inducible protein C compare
Pf1N1B4_4957 -1.7 -1.9 Transcriptional regulator, TetR family compare
Pf1N1B4_2878 -1.7 -4.5 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_762 -1.7 -3.3 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_1 -1.7 -1.7 Colicin V production protein compare
Pf1N1B4_1315 -1.6 -4.8 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_197 -1.6 -2.3 FIG139991: Putative thiamine pyrophosphate-requiring enzyme compare
Pf1N1B4_275 -1.6 -1.4 Organic hydroperoxide resistance transcriptional regulator compare
Pf1N1B4_3038 -1.6 -5.1 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Pf1N1B4_5864 -1.6 -1.8 Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF compare
Pf1N1B4_4960 -1.6 -2.6 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf1N1B4_1240 -1.6 -5.2 LysR family transcriptional regulator PA0133 conserved
Pf1N1B4_2413 -1.6 -2.9 Permeases of the major facilitator superfamily compare
Pf1N1B4_2009 -1.6 -3.1 LysR family transcriptional regulator PA5437 compare
Pf1N1B4_3518 -1.6 -2.3 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_1239 -1.6 -4.6 Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18) compare
Pf1N1B4_4822 -1.6 -2.0 Paraquat-inducible protein A compare
Pf1N1B4_2280 -1.5 -5.2 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_3795 -1.5 -1.9 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Pf1N1B4_1566 -1.5 -5.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_4518 -1.5 -2.2 Possible pyrimidine permease in reductive pathway compare
Pf1N1B4_381 -1.5 -2.0 hypothetical protein compare
Pf1N1B4_3508 -1.5 -3.8 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf1N1B4_2352 -1.5 -3.3 Glutathione synthetase (EC 6.3.2.3) compare
Pf1N1B4_4450 -1.5 -4.0 Choline dehydrogenase (EC 1.1.99.1) compare
Pf1N1B4_1348 -1.5 -2.0 Urease accessory protein UreD compare
Pf1N1B4_1374 -1.5 -2.7 HupE-UreJ family metal transporter compare
Pf1N1B4_2010 -1.5 -3.7 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf1N1B4_1391 -1.4 -3.9 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf1N1B4_4509 -1.4 -2.1 Aldose 1-epimerase compare
Pf1N1B4_751 -1.4 -1.6 hypothetical protein compare
Pf1N1B4_5906 -1.4 -2.1 Esterase/lipase compare
Pf1N1B4_2850 -1.4 -4.1 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf1N1B4_4544 -1.4 -1.7 Uncharacterized protein ImpA compare
Pf1N1B4_4667 -1.4 -2.5 Acriflavin resistance plasma membrane protein compare
Pf1N1B4_2858 -1.4 -6.2 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_3802 -1.4 -1.8 PlcB, ORFX, ORFP, ORFB, ORFA, ldh gene compare
Pf1N1B4_4866 -1.4 -2.4 hypothetical protein compare
Pf1N1B4_419 -1.4 -1.6 Transcriptional regulator, TetR family compare
Pf1N1B4_3811 -1.4 -2.3 Hydantoin racemase (EC 5.1.99.-) compare
Pf1N1B4_4385 -1.4 -2.4 Gfa-like protein compare
Pf1N1B4_875 -1.4 -1.9 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_3273 -1.4 -1.7 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf1N1B4_2169 -1.4 -1.6 FIG00953808: hypothetical protein compare
Pf1N1B4_3911 -1.3 -2.7 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf1N1B4_3073 -1.3 -3.7 probable glucosyl transferase compare
Pf1N1B4_5560 -1.3 -2.1 hypothetical protein compare
Pf1N1B4_1057 -1.3 -2.5 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_3849 -1.3 -3.0 Transcriptional regulator, GntR family compare
Pf1N1B4_1819 -1.2 -2.5 NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) compare
Pf1N1B4_4470 -1.2 -2.0 Cobalt-zinc-cadmium resistance protein CzcD compare
Pf1N1B4_2225 -1.2 -6.5 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Pf1N1B4_2894 -1.2 -2.4 FIG00956317: hypothetical protein compare
Pf1N1B4_4964 -1.2 -2.4 Tricarboxylate transport protein TctB compare
Pf1N1B4_4980 -1.2 -1.4 putative lipoprotein compare
Pf1N1B4_5151 -1.2 -2.3 FIG002283: Isochorismatase family protein compare
Pf1N1B4_2493 -1.2 -1.7 Acyl-CoA dehydrogenase (EC 1.3.8.7) compare
Pf1N1B4_4494 -1.2 -1.6 hypothetical protein compare
Pf1N1B4_5447 -1.2 -1.7 hypothetical protein compare
Pf1N1B4_824 -1.2 -2.9 POSSIBLE MEMBRANE PROTEIN compare
Pf1N1B4_4474 -1.2 -1.9 transcription regulator protein compare
Pf1N1B4_1113 -1.2 -3.5 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf1N1B4_4611 -1.2 -1.7 GlpG protein (membrane protein of glp regulon) compare
Pf1N1B4_6036 -1.2 -2.0 FIG00953132: hypothetical protein compare
Pf1N1B4_2143 -1.2 -6.3 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf1N1B4_2643 -1.1 -1.9 Predicted zinc-binding protein compare
Pf1N1B4_761 -1.1 -2.2 FIG00954879: hypothetical protein compare
Pf1N1B4_338 -1.1 -2.5 Alpha-L-Rha alpha-1,3-L-rhamnosyltransferase (EC 2.4.1.-) compare
Pf1N1B4_5031 -1.1 -2.3 Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1) compare
Pf1N1B4_399 -1.1 -1.5 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21) compare
Pf1N1B4_5393 -1.1 -1.3 hypothetical protein compare
Pf1N1B4_365 -1.1 -3.2 Cell division protein BolA compare
Pf1N1B4_1617 -1.1 -4.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_3119 -1.1 -1.9 Holin compare
Pf1N1B4_602 -1.1 -1.5 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf1N1B4_3927 -1.1 -1.6 hypothetical protein compare
Pf1N1B4_2674 -1.1 -1.5 hypothetical protein compare
Pf1N1B4_1373 -1.1 -3.8 Urease accessory protein UreG compare
Pf1N1B4_1590 -1.1 -3.3 Histidine utilization repressor compare
Pf1N1B4_5769 -1.1 -1.4 Heme d1 biosynthesis protein NirL compare
Pf1N1B4_1636 -1.1 -1.2 FIG00954739: hypothetical protein compare
Pf1N1B4_2244 -1.0 -1.7 Taurine-binding periplasmic protein TauA compare
Pf1N1B4_1901 -1.0 -2.7 Putative NADH-flavin reductase compare
Pf1N1B4_3906 -1.0 -1.8 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_5073 -1.0 -2.1 Hydroxypyruvate isomerase (EC 5.3.1.22) compare
Pf1N1B4_2368 -1.0 -2.4 Malonate transporter, MadL subunit compare
Pf1N1B4_5619 -1.0 -1.6 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf1N1B4_1504 -1.0 -1.1 Acyl carrier protein compare
Pf1N1B4_2612 -1.0 -2.3 Putative transport protein compare
Pf1N1B4_4569 -1.0 -1.7 DNA-3-methyladenine glycosylase II (EC 3.2.2.21) compare
Pf1N1B4_2873 -1.0 -2.3 hypothetical protein compare
Pf1N1B4_5898 -1.0 -1.8 hypothetical protein compare
Pf1N1B4_1936 -1.0 -2.8 Chromosome (plasmid) partitioning protein ParA compare
Pf1N1B4_4055 -1.0 -3.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Pf1N1B4_384 -1.0 -1.3 proteinase inhibitor compare
Pf1N1B4_5265 -1.0 -2.0 hypothetical protein compare
Pf1N1B4_3129 -1.0 -1.3 Prophage baseplate assembly protein V compare
Pf1N1B4_1613 -1.0 -1.9 tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) compare
Pf1N1B4_19 -1.0 -3.1 tRNA-dihydrouridine synthase C (EC 1.-.-.-) compare
Pf1N1B4_3697 -1.0 -3.8 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf1N1B4_3789 -1.0 -2.0 Superfamily II DNA/RNA helicases, SNF2 family compare
Pf1N1B4_2885 -1.0 -3.1 Paraquat-inducible protein A compare
Pf1N1B4_5576 -1.0 -1.7 hypothetical protein compare
Pf1N1B4_3855 -1.0 -2.2 Chromosome partition protein smc compare
Pf1N1B4_912 -1.0 -2.8 Toxin mRNA interferase YgiU compare
Pf1N1B4_5957 -1.0 -1.4 Arsenical resistance operon repressor compare
Pf1N1B4_2487 -1.0 -3.7 Biotin synthase (EC 2.8.1.6) compare
Pf1N1B4_5880 -1.0 -1.7 AttH component of AttEFGH ABC transport system compare
Pf1N1B4_1785 -1.0 -2.4 Uricase (urate oxidase) (EC 1.7.3.3) compare
Pf1N1B4_2234 -0.9 -2.7 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
Pf1N1B4_2071 -0.9 -1.1 Protein phosphatase ImpM compare
Pf1N1B4_3729 -0.9 -1.5 Quaternary ammonium compound-resistance protein SugE compare
Pf1N1B4_2912 -0.9 -1.3 GTP-binding and nucleic acid-binding protein YchF compare
Pf1N1B4_1392 -0.9 -3.7 Protein containing domains DUF404, DUF407, DUF403 compare
Pf1N1B4_899 -0.9 -1.1 DNA polymerase III chi subunit (EC 2.7.7.7) compare
Pf1N1B4_5955 -0.9 -2.4 Permease of the major facilitator superfamily compare
Pf1N1B4_1389 -0.9 -1.5 Lysine decarboxylase family compare
Pf1N1B4_4485 -0.9 -1.3 membrane protein, putative compare
Pf1N1B4_2039 -0.9 -1.5 hypothetical protein compare
Pf1N1B4_2541 -0.9 -3.6 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) compare
Pf1N1B4_4491 -0.9 -2.1 ABC transporter permease protein compare
Pf1N1B4_4304 -0.9 -1.8 hypothetical protein compare
Pf1N1B4_5498 -0.9 -1.1 hypothetical protein compare
Pf1N1B4_4869 -0.9 -2.2 Isoquinoline 1-oxidoreductase beta subunit (EC 1.3.99.16) compare
Pf1N1B4_5483 -0.9 -1.1 hypothetical protein compare
Pf1N1B4_5219 -0.9 -1.8 tRNA-Gly-CCC compare
Pf1N1B4_567 -0.9 -1.3 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf1N1B4_5904 -0.9 -1.3 FIG00955320: hypothetical protein compare
Pf1N1B4_2833 -0.9 -2.0 Benzoate transport protein compare
Pf1N1B4_2262 -0.9 -4.7 Lysine ABC transporter, permease component (from data) compare
Pf1N1B4_2465 -0.9 -1.6 Two-component response regulator CreB compare
Pf1N1B4_952 -0.9 -1.7 Cell division protein MraZ compare
Pf1N1B4_3331 -0.9 -1.4 Glycine cleavage system transcriptional antiactivator GcvR compare
Pf1N1B4_2269 -0.9 -1.7 Purine nucleoside phosphorylase (EC 2.4.2.1) compare


Specific Phenotypes

For 2 genes in this experiment

For nitrogen source Uridine in Pseudomonas fluorescens FW300-N1B4

For nitrogen source Uridine across organisms