Experiment set5IT006 for Cupriavidus basilensis FW507-4G11

Compare to:

R2A with Cephalothin sodium salt 0.25 mg/ml

200 most important genes:

  gene name fitness t score description  
RR42_RS33255 -2.9 -4.3 protein-tyrosine phosphatase compare
RR42_RS17355 -2.8 -1.5 hypothetical protein compare
RR42_RS03095 -2.6 -2.0 succinyl-CoA synthetase subunit beta compare
RR42_RS07555 -2.5 -2.9 potassium transporter Kup compare
RR42_RS33250 -2.4 -9.1 tyrosine protein kinase compare
RR42_RS14360 -2.2 -1.6 tryptophan synthase subunit alpha compare
RR42_RS14365 -2.1 -3.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS33260 -1.9 -7.6 multidrug MFS transporter compare
RR42_RS19005 -1.9 -4.8 3-dehydroquinate synthase compare
RR42_RS24930 -1.8 -1.4 AraC family transcriptional regulator compare
RR42_RS06255 -1.8 -1.4 lipoprotein compare
RR42_RS18855 -1.7 -3.0 preprotein translocase compare
RR42_RS11770 -1.7 -2.7 cyclase compare
RR42_RS19485 -1.7 -1.3 general secretion pathway protein GspH compare
RR42_RS04255 -1.7 -2.1 chemotaxis protein CheW compare
RR42_RS01920 -1.6 -3.4 protoheme IX farnesyltransferase compare
RR42_RS11065 -1.6 -2.7 phenylacetic acid degradation protein compare
RR42_RS13910 -1.6 -6.9 glutamate racemase compare
RR42_RS18305 -1.5 -3.6 anthranilate phosphoribosyltransferase compare
RR42_RS06095 -1.5 -3.9 hypothetical protein compare
RR42_RS07140 -1.5 -2.0 hypothetical protein compare
RR42_RS04700 -1.5 -1.4 ribonuclease G compare
RR42_RS02420 -1.5 -1.2 SAM-dependent methyltransferase compare
RR42_RS07380 -1.5 -3.3 dihydrolipoamide dehydrogenase compare
RR42_RS32645 -1.4 -1.9 2-keto-4-pentenoate hydratase compare
RR42_RS05955 -1.4 -1.3 hypothetical protein compare
RR42_RS01885 -1.4 -4.6 cytochrome C oxidase assembly protein compare
RR42_RS21220 -1.4 -2.0 iron transporter FeoB compare
RR42_RS15245 -1.4 -2.4 alpha/beta hydrolase compare
RR42_RS04475 -1.3 -8.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS22940 -1.3 -3.0 TetR family transcriptional regulator compare
RR42_RS33240 -1.3 -9.6 GDP-L-fucose synthase compare
RR42_RS02860 -1.3 -1.8 hypothetical protein compare
RR42_RS15640 -1.3 -1.3 hypothetical protein compare
RR42_RS00625 -1.3 -1.6 hypothetical protein compare
RR42_RS04735 -1.3 -1.4 hypothetical protein compare
RR42_RS12015 -1.2 -2.3 dihydrolipoamide acyltransferase compare
RR42_RS19920 -1.2 -5.0 membrane protein compare
RR42_RS33235 -1.2 -6.1 GDP-mannose 4,6-dehydratase compare
RR42_RS02775 -1.2 -1.7 molecular chaperone SurA compare
RR42_RS06805 -1.2 -3.5 hypothetical protein compare
RR42_RS04245 -1.2 -2.3 chemotaxis protein CheY compare
RR42_RS25015 -1.2 -3.0 gluconolactonase compare
RR42_RS01755 -1.2 -2.6 nitrogen regulatory protein P-II 1 compare
RR42_RS23760 -1.1 -3.2 tRNA-Asn compare
RR42_RS19885 -1.1 -1.5 aminoglycoside transporter compare
RR42_RS03035 -1.1 -1.2 membrane protein compare
RR42_RS20775 -1.1 -1.0 hypothetical protein compare
RR42_RS05500 -1.1 -1.1 preprotein translocase subunit SecG compare
RR42_RS25030 -1.1 -2.3 ABC transporter permease compare
RR42_RS11580 -1.1 -1.3 hypothetical protein compare
RR42_RS19645 -1.1 -2.2 DNA topoisomerase compare
RR42_RS23595 -1.1 -3.1 dTDP-4-dehydrorhamnose 3,5-epimerase compare
RR42_RS15015 -1.1 -0.9 exodeoxyribonuclease VII small subunit compare
RR42_RS03370 -1.1 -2.5 fructose ABC transporter, substrate-binding component (FrcB) (from data) compare
RR42_RS01895 -1.1 -4.0 MFS transporter compare
RR42_RS03315 -1.1 -3.8 RND transporter MFP subunit compare
RR42_RS19860 -1.1 -1.1 tartronate semialdehyde reductase compare
RR42_RS01095 -1.1 -1.6 membrane protein compare
RR42_RS23635 -1.0 -2.7 flagellar assembly protein FliT compare
RR42_RS13275 -1.0 -4.6 antibiotic biosynthesis monooxygenase compare
RR42_RS09310 -1.0 -1.8 IclR family transcriptional regulator compare
RR42_RS25640 -1.0 -2.2 3-hydroxyisobutyrate dehydrogenase compare
RR42_RS33210 -1.0 -3.6 teichoic acid biosynthesis protein compare
RR42_RS04890 -1.0 -2.8 ribonuclease PH compare
RR42_RS01915 -1.0 -5.2 cytochrome C oxidase subunit I compare
RR42_RS03020 -1.0 -1.1 MarR family transcriptional regulator compare
RR42_RS06485 -1.0 -4.0 chorismate synthase compare
RR42_RS32590 -1.0 -1.3 cytochrome o ubiquinol oxidase subunit III compare
RR42_RS12040 -1.0 -5.7 MFS transporter compare
RR42_RS27520 -1.0 -2.2 hypothetical protein compare
RR42_RS22030 -1.0 -2.5 hypothetical protein compare
RR42_RS33850 -1.0 -1.9 hypothetical protein compare
RR42_RS01925 -1.0 -5.2 photosynthetic protein synthase I compare
RR42_RS01820 -1.0 -4.3 peptidase S41 compare
RR42_RS23305 -0.9 -1.2 hypothetical protein compare
RR42_RS32670 -0.9 -1.5 phenol hydroxylase compare
RR42_RS33245 -0.9 -4.9 mannose-1-phosphate guanyltransferase compare
RR42_RS32085 -0.9 -1.2 hypothetical protein compare
RR42_RS17720 -0.9 -2.0 sugar kinase compare
RR42_RS31330 -0.9 -1.3 LysR family transcriptional regulator compare
RR42_RS31850 -0.9 -2.0 2-keto-4-pentenoate hydratase compare
RR42_RS31535 -0.9 -2.4 transcriptional regulator compare
RR42_RS18730 -0.9 -1.6 hypothetical protein compare
RR42_RS21605 -0.9 -1.3 S-adenosylhomocysteine hydrolase compare
RR42_RS03080 -0.9 -2.6 recombinase RecA compare
RR42_RS07365 -0.9 -2.2 pyruvate dehydrogenase compare
RR42_RS01910 -0.9 -4.2 cytochrome C oxidase subunit I compare
RR42_RS01880 -0.9 -3.8 cytochrome oxidase subunit I compare
RR42_RS02250 -0.9 -2.9 GntR family transcriptional regulator compare
RR42_RS15090 -0.9 -2.4 DNA helicase compare
RR42_RS04015 -0.9 -1.1 RNA polymerase sigma factor compare
RR42_RS31530 -0.9 -2.2 histidine kinase compare
RR42_RS15740 -0.9 -1.3 hypothetical protein compare
RR42_RS06020 -0.9 -0.9 Fe-S cluster assembly transcriptional regulator IscR compare
RR42_RS05305 -0.9 -3.5 NADP oxidoreductase compare
RR42_RS05905 -0.9 -2.4 hypothetical protein compare
RR42_RS06860 -0.9 -1.5 hypothetical protein compare
RR42_RS20030 -0.9 -3.3 ABC transporter permease compare
RR42_RS12615 -0.9 -1.5 LexA family transcriptional regulator compare
RR42_RS06250 -0.9 -1.6 dihydrodipicolinate synthase compare
RR42_RS09075 -0.9 -3.3 amino acid dehydrogenase compare
RR42_RS15035 -0.9 -2.5 ZIP zinc transporter compare
RR42_RS09835 -0.9 -2.0 chemotaxis protein compare
RR42_RS05290 -0.9 -1.9 ankyrin compare
RR42_RS22230 -0.9 -1.1 hypothetical protein compare
RR42_RS13365 -0.9 -1.2 peptidase P60 compare
RR42_RS22935 -0.9 -3.3 metal transporter compare
RR42_RS08260 -0.9 -1.6 hypothetical protein compare
RR42_RS01185 -0.9 -4.8 muropeptide transporter compare
RR42_RS30340 -0.9 -2.3 ABC transporter permease compare
RR42_RS31055 -0.9 -2.3 3-hydroxybutyryl-CoA dehydrogenase compare
RR42_RS10920 -0.9 -1.4 hypothetical protein compare
RR42_RS14530 -0.9 -3.0 2-hydroxyacid dehydrogenase compare
RR42_RS31900 -0.8 -1.9 short-chain dehydrogenase compare
RR42_RS06875 -0.8 -1.7 hypothetical protein compare
RR42_RS03050 -0.8 -1.9 energy transducer TonB compare
RR42_RS30980 -0.8 -1.4 hypothetical protein compare
RR42_RS03620 -0.8 -2.4 lipid A biosynthesis lauroyl acyltransferase compare
RR42_RS07825 -0.8 -1.6 D-amino acid oxidase compare
RR42_RS32360 -0.8 -3.1 hypothetical protein compare
RR42_RS12390 -0.8 -1.8 transporter compare
RR42_RS21690 -0.8 -0.9 acetyltransferase compare
RR42_RS09015 -0.8 -1.6 trigger factor compare
RR42_RS18815 -0.8 -4.4 cytochrome C compare
RR42_RS07620 -0.8 -3.5 polyhydroxyalkanoate synthesis repressor PhaR compare
RR42_RS30545 -0.8 -3.1 cobalt-precorrin-6Y C(5)-methyltransferase compare
RR42_RS20310 -0.8 -0.8 copper-binding protein compare
RR42_RS27160 -0.8 -1.8 acetyl-CoA acetyltransferase compare
RR42_RS32385 -0.8 -2.3 citrate synthase compare
RR42_RS13225 -0.8 -2.9 hypothetical protein compare
RR42_RS21095 -0.8 -2.6 GntR family transcriptional regulator compare
RR42_RS00545 -0.8 -3.1 transglutaminase compare
RR42_RS08025 -0.8 -1.4 phage Gp37Gp68 compare
RR42_RS13270 -0.8 -4.5 recombination protein RecR compare
RR42_RS17620 -0.8 -2.6 phosphatidylglycerophosphatase compare
RR42_RS13455 -0.8 -2.4 phosphate ABC transporter ATP-binding protein compare
RR42_RS04880 -0.8 -4.7 coproporphyrinogen III oxidase compare
RR42_RS13040 -0.8 -3.4 iron transporter compare
RR42_RS23650 -0.8 -1.1 flagellar protein compare
RR42_RS22950 -0.8 -3.2 cytochrome C550 compare
RR42_RS07440 -0.8 -1.2 hypothetical protein compare
RR42_RS13190 -0.8 -2.6 outer membrane metallopeptidase lipoprotein nlpD compare
RR42_RS02500 -0.8 -1.4 TetR family transcriptional regulator compare
RR42_RS33660 -0.8 -2.1 dihydrofolate reductase compare
RR42_RS13065 -0.8 -5.1 ribonuclease R compare
RR42_RS14235 -0.8 -1.0 hypothetical protein compare
RR42_RS14055 -0.8 -1.6 elongation factor 4 compare
RR42_RS13195 -0.8 -4.6 protein-L-isoaspartate O-methyltransferase compare
RR42_RS13020 -0.8 -2.2 peptidase A8 compare
RR42_RS13460 -0.8 -2.9 phosphate transporter permease subunit PtsA compare
RR42_RS06545 -0.8 -1.5 thioesterase compare
RR42_RS27120 -0.8 -1.0 amino acid ABC transporter permease compare
RR42_RS13905 -0.8 -2.3 fumarate hydratase compare
RR42_RS16785 -0.8 -3.1 manganese transporter compare
RR42_RS16525 -0.7 -1.8 anti-sigma factor compare
RR42_RS31960 -0.7 -1.4 biphenyl 2,3-dioxygenase compare
RR42_RS18300 -0.7 -1.6 anthranilate synthase subunit II compare
RR42_RS21175 -0.7 -1.9 transporter compare
RR42_RS18425 -0.7 -0.6 hypothetical protein compare
RR42_RS25225 -0.7 -2.1 NAD(P) transhydrogenase compare
RR42_RS15290 -0.7 -1.6 cupin compare
RR42_RS06240 -0.7 -1.1 tryptophan--tRNA ligase compare
RR42_RS18825 -0.7 -1.1 ubiquinol-cytochrome C reductase compare
RR42_RS11985 -0.7 -2.5 glutathione ABC transporter permease compare
RR42_RS07565 -0.7 -3.3 transcription accessory protein compare
RR42_RS37400 -0.7 -0.7 6-phosphogluconolactonase compare
RR42_RS34965 -0.7 -2.4 dioxygenase compare
RR42_RS19525 -0.7 -2.5 general secretion pathway protein GspE compare
RR42_RS27175 -0.7 -2.4 AraC family transcriptional regulator compare
RR42_RS17375 -0.7 -1.0 hypothetical protein compare
RR42_RS18420 -0.7 -3.8 hypothetical protein compare
RR42_RS34280 -0.7 -2.5 hypothetical protein compare
RR42_RS09580 -0.7 -0.8 hypothetical protein compare
RR42_RS03405 -0.7 -3.2 epoxyqueuosine reductase compare
RR42_RS06270 -0.7 -3.4 cupin compare
RR42_RS16950 -0.7 -2.4 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
RR42_RS31125 -0.7 -2.1 hypothetical protein compare
RR42_RS02210 -0.7 -0.6 succinate dehydrogenase compare
RR42_RS00955 -0.7 -3.6 hydroxymethylglutaryl-CoA lyase compare
RR42_RS30735 -0.7 -1.3 tRNA-Met compare
RR42_RS28955 -0.7 -3.5 transcriptional regulator compare
RR42_RS02150 -0.7 -1.0 membrane protein compare
RR42_RS34395 -0.7 -1.0 hypothetical protein compare
RR42_RS12240 -0.7 -0.9 hypothetical protein compare
RR42_RS25625 -0.7 -1.2 LysR family transcriptional regulator compare
RR42_RS18295 -0.7 -4.5 anthranilate synthase component I compare
RR42_RS06890 -0.7 -0.7 hypothetical protein compare
RR42_RS15905 -0.7 -4.3 phosphoenolpyruvate carboxylase compare
RR42_RS12760 -0.7 -3.9 hypothetical protein compare
RR42_RS35240 -0.7 -1.9 acyl-CoA dehydrogenase compare
RR42_RS09590 -0.7 -1.0 hypothetical protein compare
RR42_RS09375 -0.7 -0.9 taurine dioxygenase compare
RR42_RS15770 -0.7 -1.7 hypothetical protein compare
RR42_RS04850 -0.7 -1.1 hypothetical protein compare
RR42_RS31790 -0.7 -0.9 nitrite reductase compare
RR42_RS28125 -0.7 -1.6 hypothetical protein compare
RR42_RS08000 -0.7 -0.6 hypothetical protein compare
RR42_RS21435 -0.7 -1.3 hypothetical protein compare
RR42_RS31735 -0.7 -1.7 ABC transporter ATP-binding protein compare


Specific Phenotypes

For 1 genes in this experiment

For stress Cephalothin sodium salt in Cupriavidus basilensis FW507-4G11

For stress Cephalothin sodium salt across organisms