Experiment set5IT006 for Bifidobacterium breve UCC2003

Compare to:

Recovery broth with Sulfamonomethoxine 0.005 mM and Trimethoprim 0.003 mM

200 most important genes:

  gene name fitness t score description  
BBR_RS10255 -5.6 -5.4 chromosomal replication initiator protein DnaA compare
BBR_RS12545 -4.0 -4.7 DUF4012 domain-containing protein compare
BBR_RS15650 -3.0 -3.5 Holliday junction resolvase compare
BBR_RS18175 -3.0 -2.0 GTP cyclohydrolase I FolE compare
BBR_RS13070 -2.6 -2.2 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
BBR_RS16750 -2.5 -3.0 ParA family protein compare
BBR_RS14130 -2.5 -2.0 septum formation initiator family protein compare
BBR_RS20435 -2.3 -2.0 CCA tRNA nucleotidyltransferase compare
BBR_RS21015 -2.3 -2.1 hypothetical protein compare
BBR_RS15915 -2.3 -1.5 type II toxin-antitoxin system antitoxin, RelB/DinJ family compare
BBR_RS18565 -2.2 -1.8 CHAP domain-containing protein compare
BBR_RS15090 -2.1 -2.0 type II 3-dehydroquinate dehydratase compare
BBR_RS16820 -2.1 -4.1 RNA polymerase sigma factor RpoE compare
BBR_RS16540 -2.1 -6.5 XRE family transcriptional regulator compare
BBR_RS17135 -1.7 -1.1 RluA family pseudouridine synthase compare
BBR_RS14265 -1.7 -4.9 Solute-binding protein of ABC transporter system for metals compare
BBR_RS14850 -1.7 -2.5 VOC family protein compare
BBR_RS10620 -1.7 -4.4 phosphoprotein phosphatase compare
BBR_RS16635 -1.7 -2.7 ABC transporter ATP-binding protein compare
BBR_RS14190 -1.7 -8.0 transcriptional regulator compare
BBR_RS19190 -1.6 -6.5 3-deoxy-7-phosphoheptulonate synthase compare
BBR_RS15070 -1.6 -4.0 endolytic transglycosylase MltG compare
BBR_RS15055 -1.6 -2.8 hypothetical protein compare
BBR_RS19070 -1.6 -1.5 50S ribosomal protein L33 compare
BBR_RS19125 -1.6 -6.0 hypothetical protein compare
BBR_RS15440 -1.6 -4.0 orotidine-5'-phosphate decarboxylase compare
BBR_RS18745 -1.6 -2.1 bifunctional riboflavin kinase/FMN adenylyltransferase compare
BBR_RS15435 -1.6 -3.5 dihydroorotase compare
BBR_RS16490 -1.6 -4.8 polyprenyl synthase compare
BBR_RS19160 -1.5 -1.7 phosphate ABC transporter permease subunit PstC compare
BBR_RS20465 -1.5 -6.2 chromosome partitioning protein compare
BBR_RS14370 -1.5 -4.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
BBR_RS10625 -1.5 -2.4 FHA domain-containing protein compare
BBR_RS15425 -1.5 -3.0 aspartate carbamoyltransferase compare
BBR_RS18170 -1.4 -2.3 dihydropteroate synthase compare
BBR_RS12370 -1.4 -1.5 cell division protein compare
BBR_RS16960 -1.4 -3.3 transcriptional regulator MraZ compare
BBR_RS19120 -1.4 -7.0 helicase compare
BBR_RS19815 -1.4 -11.6 ABC transporter permease compare
BBR_RS10940 -1.4 -9.6 DedA family protein compare
BBR_RS16950 -1.3 -2.6 hypothetical protein compare
BBR_RS13770 -1.3 -2.3 DNA repair protein RecO compare
BBR_RS18180 -1.2 -7.1 ATP-dependent zinc metalloprotease FtsH compare
BBR_RS13035 -1.2 -0.8 ABC transporter permease compare
BBR_RS16625 -1.2 -4.2 DUF3710 domain-containing protein compare
BBR_RS10755 -1.2 -4.2 adenylosuccinate synthase compare
BBR_RS13635 -1.2 -5.4 carbamoyl-phosphate synthase large subunit compare
BBR_RS13630 -1.2 -4.2 carbamoyl-phosphate synthase small subunit compare
BBR_RS19435 -1.2 -1.7 pyridoxal phosphate-dependent aminotransferase compare
BBR_RS12980 -1.1 -8.1 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS15080 -1.1 -2.2 chorismate synthase compare
BBR_RS13030 -1.1 -1.1 cell division ATP-binding protein FtsE compare
BBR_RS15450 -1.1 -3.5 dihydroorotate dehydrogenase compare
BBR_RS19540 -1.1 -1.0 homoserine dehydrogenase compare
BBR_RS19820 -1.0 -8.5 ATP-binding protein of ABC transporter system compare
BBR_RS12975 -1.0 -7.3 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS13640 -1.0 -3.9 orotidine-5'-phosphate decarboxylase compare
BBR_RS11770 -1.0 -3.2 chorismate mutase compare
BBR_RS19390 -1.0 -1.8 hypothetical protein compare
BBR_RS19450 -1.0 -1.2 GTPase ObgE compare
BBR_RS20460 -1.0 -3.2 chromosome partitioning protein ParB compare
BBR_RS14210 -1.0 -0.6 hypothetical protein compare
BBR_RS12305 -1.0 -4.1 endonuclease/exonuclease/phosphatase family protein compare
BBR_RS18990 -1.0 -2.4 AbrB family transcriptional regulator compare
BBR_RS18215 -0.9 -5.2 AI-2E family transporter compare
BBR_RS16955 -0.9 -1.9 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
BBR_RS17495 -0.9 -5.4 DUF58 domain-containing protein compare
BBR_RS19645 -0.9 -4.6 RNA degradosome polyphosphate kinase compare
BBR_RS16905 -0.9 -3.1 hypothetical protein compare
BBR_RS19465 -0.9 -3.5 ribonuclease E/G compare
BBR_RS12045 -0.9 -3.4 hypothetical protein compare
BBR_RS13805 -0.9 -2.0 hypothetical protein compare
BBR_RS17500 -0.9 -4.7 hypothetical protein compare
BBR_RS17515 -0.9 -4.6 hypothetical protein compare
BBR_RS14240 -0.9 -3.5 1,4-alpha-glucan branching protein GlgB compare
BBR_RS16430 -0.8 -2.0 nucleotide pyrophosphatase compare
BBR_RS21170 -0.8 -5.1 membrane protein insertion efficiency factor YidD compare
BBR_RS17510 -0.8 -4.0 VWA domain-containing protein compare
BBR_RS15520 -0.8 -2.1 shikimate 5-dehydrogenase compare
BBR_RS18725 -0.8 -1.8 ribonuclease HI compare
BBR_RS14585 -0.8 -1.2 hypothetical protein compare
BBR_RS20455 -0.8 -4.0 thioredoxin-disulfide reductase compare
BBR_RS17640 -0.8 -1.3 DNA-directed RNA polymerase subunit omega compare
BBR_RS19640 -0.8 -0.8 phosphoesterase compare
BBR_RS16285 -0.8 -4.0 magnesium transporter CorA family protein compare
BBR_RS16425 -0.8 -1.3 DUF3071 domain-containing protein compare
BBR_RS10660 -0.8 -6.5 esterase compare
BBR_RS18185 -0.8 -2.9 hypoxanthine phosphoribosyltransferase compare
BBR_RS14205 -0.8 -1.7 hypothetical protein compare
BBR_RS14215 -0.7 -1.6 peptidase compare
BBR_RS15680 -0.7 -4.0 succinate--CoA ligase subunit alpha compare
BBR_RS16250 -0.7 -2.3 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB compare
BBR_RS12355 -0.7 -2.3 ribonuclease III compare
BBR_RS19535 -0.7 -5.4 homoserine kinase (EC 2.7.1.39) (from data) compare
BBR_RS17455 -0.7 -3.9 DNA-binding response regulator compare
BBR_RS19260 -0.7 -5.8 hypothetical protein compare
BBR_RS12720 -0.7 -1.7 hypothetical protein compare
BBR_RS11720 -0.7 -2.6 DUF2469 domain-containing protein compare
BBR_RS17505 -0.7 -4.4 VWA domain-containing protein compare
BBR_RS15085 -0.7 -0.7 3-dehydroquinate synthase compare
BBR_RS16530 -0.7 -2.8 recombinase RecA compare
BBR_RS13370 -0.7 -1.5 phosphoribosylamine--glycine ligase compare
BBR_RS15455 -0.7 -1.3 orotate phosphoribosyltransferase compare
BBR_RS12380 -0.6 -2.6 DUF3039 domain-containing protein compare
BBR_RS18050 -0.6 -1.3 threonylcarbamoyl-AMP synthase compare
BBR_RS15855 -0.6 -2.2 N-acetyltransferase compare
BBR_RS14200 -0.6 -2.2 WhiB family transcriptional regulator compare
BBR_RS16675 -0.6 -1.9 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
BBR_RS16245 -0.6 -1.3 ribosomal-protein-alanine N-acetyltransferase compare
BBR_RS16220 -0.6 -0.7 DNA cytosine methyltransferase compare
BBR_RS15655 -0.6 -2.2 Holliday junction branch migration protein RuvA compare
BBR_RS20415 -0.6 -5.3 G5 domain-containing protein compare
BBR_RS16640 -0.6 -1.3 ABC transporter permease compare
BBR_RS17490 -0.6 -4.3 MoxR family ATPase compare
BBR_RS11180 -0.6 -4.8 phosphatase PAP2 family protein compare
BBR_RS14540 -0.6 -1.4 Na+/H+ antiporter NhaA compare
BBR_RS14505 -0.6 -1.9 hypothetical protein compare
BBR_RS11680 -0.6 -4.3 23S rRNA methyltransferase compare
BBR_RS12940 -0.6 -3.2 hypothetical protein compare
BBR_RS12710 -0.6 -2.2 hypothetical protein compare
BBR_RS13735 -0.6 -1.1 Lon protease compare
BBR_RS12605 -0.6 -1.8 glycosyltransferase family 2 protein compare
BBR_RS17790 -0.6 -2.5 hypothetical protein compare
BBR_RS18165 -0.5 -3.4 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase compare
BBR_RS12900 -0.5 -1.3 DeoR/GlpR transcriptional regulator compare
BBR_RS15320 -0.5 -1.6 hypothetical protein compare
BBR_RS10615 -0.5 -2.3 FtsW/RodA/SpoVE family cell cycle protein compare
BBR_RS13750 -0.5 -1.4 DivIVA domain-containing protein compare
BBR_RS15750 -0.5 -0.8 hypothetical protein compare
BBR_RS18690 -0.5 -2.3 diacylglycerol kinase compare
BBR_RS19395 -0.5 -1.1 hypothetical protein compare
BBR_RS15670 -0.5 -1.4 adenine phosphoribosyltransferase compare
BBR_RS15660 -0.5 -1.9 Holliday junction branch migration DNA helicase RuvB compare
BBR_RS12590 -0.5 -0.8 beta-1,6-N-acetylglucosaminyltransferase compare
BBR_RS16555 -0.5 -0.6 DNA translocase FtsK compare
BBR_RS18325 -0.5 -1.6 DNA-binding protein compare
BBR_RS12235 -0.5 -0.7 hypothetical protein compare
BBR_RS14960 -0.5 -2.1 alpha/beta hydrolase compare
BBR_RS13490 -0.5 -0.9 30S ribosomal protein S7 compare
BBR_RS18045 -0.5 -0.8 undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BBR_RS18795 -0.5 -1.4 tRNA pseudouridine(38-40) synthase TruA compare
BBR_RS13940 -0.5 -2.0 integrase compare
BBR_RS15675 -0.5 -2.1 ADP-forming succinate--CoA ligase subunit beta compare
BBR_RS13625 -0.5 -1.2 transcription antitermination factor NusB compare
BBR_RS21040 -0.5 -1.6 transcription factor WhiB compare
BBR_RS19055 -0.5 -1.0 ferredoxin family protein compare
BBR_RS14765 -0.5 -0.6 hypothetical protein compare
BBR_RS18220 -0.5 -3.3 glycosyltransferase family 2 protein compare
BBR_RS19295 -0.5 -4.2 ATP-dependent DNA helicase RecG compare
BBR_RS16655 -0.5 -1.9 tyrosine recombinase XerC compare
BBR_RS15860 -0.5 -0.2 DUF2316 domain-containing protein compare
BBR_RS17155 -0.5 -0.6 cell division protein SepF compare
BBR_RS20480 -0.5 -0.5 membrane protein compare
BBR_RS15790 -0.4 -2.8 ATP phosphoribosyltransferase compare
BBR_RS14625 -0.4 -2.4 pyrroline-5-carboxylate reductase compare
BBR_RS10580 -0.4 -1.5 septation inhibitor protein compare
BBR_RS16985 -0.4 -1.4 transcriptional repressor LexA compare
BBR_RS10905 -0.4 -1.8 nucleotide exchange factor GrpE compare
BBR_RS20555 -0.4 -1.0 hypothetical protein compare
BBR_RS12985 -0.4 -2.3 MFS transporter compare
BBR_RS14000 -0.4 -1.9 hypothetical protein compare
BBR_RS12300 -0.4 -1.8 30S ribosomal protein S16 compare
BBR_RS14280 -0.4 -1.4 dephospho-CoA kinase compare
BBR_RS20400 -0.4 -3.8 serine/threonine protein kinase compare
BBR_RS12460 -0.4 -2.7 LacI family DNA-binding transcriptional regulator compare
BBR_RS10990 -0.4 -2.0 recombination protein RecR compare
BBR_RS15445 -0.4 -1.9 dihydroorotate dehydrogenase electron transfer subunit compare
BBR_RS15665 -0.4 -1.2 preprotein translocase subunit YajC compare
BBR_RS10555 -0.4 -0.5 DUF3073 domain-containing protein compare
BBR_RS17395 -0.4 -3.1 DUF349 domain-containing protein compare
BBR_RS14075 -0.4 -2.5 glutamate-5-semialdehyde dehydrogenase compare
BBR_RS15370 -0.4 -0.6 macro domain-containing protein compare
BBR_RS20815 -0.4 -1.5 potassium transporter Trk compare
BBR_RS15405 -0.4 -3.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
BBR_RS11510 -0.4 -1.1 signal recognition particle-docking protein FtsY compare
BBR_RS13040 -0.4 -0.3 CHAP domain-containing protein compare
BBR_RS14685 -0.4 -1.4 YccF domain-containing protein compare
BBR_RS16515 -0.4 -1.1 preprotein translocase subunit SecA compare
BBR_RS19915 -0.4 -2.8 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
BBR_RS16240 -0.4 -1.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD compare
BBR_RS14335 -0.4 -1.3 hypothetical protein compare
BBR_RS13325 -0.4 -1.5 hypothetical protein compare
BBR_RS12175 -0.4 -2.5 TetR/AcrR family transcriptional regulator compare
BBR_RS10265 -0.4 -2.4 DNA replication and repair protein RecF compare
BBR_RS19095 -0.4 -3.0 magnesium transporter compare
BBR_RS16610 -0.4 -1.6 hypothetical protein compare
BBR_RS16070 -0.4 -0.9 hypothetical protein compare
BBR_RS19750 -0.4 -3.2 LTA synthase family protein compare
BBR_RS20475 -0.4 -3.1 KH domain-containing protein compare
BBR_RS14475 -0.4 -2.4 formate C-acetyltransferase compare
BBR_RS11595 -0.4 -0.9 50S ribosomal protein L9 compare
BBR_RS21010 -0.4 -1.6 hypothetical protein compare
BBR_RS12620 -0.4 -2.6 glycosyltransferase family 1 protein compare
BBR_RS19155 -0.3 -1.9 phosphate ABC transporter, permease protein PstA compare
BBR_RS16010 -0.3 -1.2 hypothetical protein compare
BBR_RS14520 -0.3 -1.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
BBR_RS15685 -0.3 -2.4 hypothetical protein compare
BBR_RS17290 -0.3 -1.9 Fused ATP-binding protein and permease of ABC transporter compare
BBR_RS11540 -0.3 -0.5 DUF1727 domain-containing protein compare
BBR_RS15330 -0.3 -1.2 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Bifidobacterium breve UCC2003 in stress experiments

For stress Sulfamonomethoxine across organisms