Experiment set5IT005 for Pseudomonas fluorescens FW300-N2E3

Compare to:

L-Phenylalanine carbon source

200 most important genes:

  gene name fitness t score description  
AO353_20695 -4.0 -4.8 O-succinylhomoserine sulfhydrylase compare
AO353_20625 -3.9 -2.7 3-isopropylmalate dehydratase compare
AO353_07210 -3.9 -2.7 indole-3-glycerol-phosphate synthase compare
AO353_13070 -3.9 -6.0 phosphoserine phosphatase compare
AO353_12365 -3.9 -2.7 phosphoribosyl-AMP cyclohydrolase compare
AO353_15550 -3.8 -8.1 Homogentisate 1,2-dioxygenase (EC 1.13.11.5) (from data) conserved
AO353_02075 -3.8 -7.2 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_20620 -3.8 -6.7 isopropylmalate isomerase compare
AO353_26925 -3.8 -6.3 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data) conserved
AO353_07230 -3.7 -11.3 anthranilate synthase compare
AO353_07215 -3.7 -3.6 anthranilate phosphoribosyltransferase compare
AO353_22800 -3.7 -2.6 sulfite reductase compare
AO353_12085 -3.7 -6.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_07515 -3.7 -2.5 transporter compare
AO353_14505 -3.6 -8.2 ketol-acid reductoisomerase compare
AO353_18585 -3.6 -9.2 Phenylalanine 4-monooxygenase (EC 1.14.16.1) (from data) conserved
AO353_00430 -3.5 -3.4 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_19090 -3.5 -2.4 MarR family transcriptional regulator compare
AO353_05115 -3.5 -8.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_13165 -3.5 -4.8 ATP phosphoribosyltransferase regulatory subunit compare
AO353_08345 -3.5 -5.8 dihydroxy-acid dehydratase compare
AO353_14990 -3.4 -2.3 hypothetical protein compare
AO353_12070 -3.3 -7.4 imidazoleglycerol-phosphate dehydratase compare
AO353_15560 -3.3 -3.9 Maleylacetoacetate isomerase (EC 5.2.1.2) (from data) compare
AO353_18590 -3.3 -9.7 AAA family ATPase conserved
AO353_20635 -3.3 -10.0 3-isopropylmalate dehydrogenase compare
AO353_08185 -3.2 -7.6 methionine biosynthesis protein MetW compare
AO353_09315 -3.2 -9.1 LysR family transcriptional regulator compare
AO353_18575 -3.2 -6.2 tyrosine aminotransferase (EC 2.6.1.57) (from data) conserved
AO353_26550 -3.2 -3.1 hypothetical protein compare
AO353_10670 -3.2 -6.4 shikimate dehydrogenase compare
AO353_14220 -3.1 -2.2 ribosomal large subunit pseudouridine synthase D compare
AO353_10035 -3.1 -7.6 LysR family transcriptional regulator compare
AO353_10025 -3.1 -11.4 pyruvate carboxylase subunit B compare
AO353_14495 -3.1 -7.9 acetolactate synthase 3 catalytic subunit compare
AO353_08510 -3.1 -3.7 3-phosphoglycerate dehydrogenase compare
AO353_08685 -3.1 -4.7 N-acetylglutamate synthase compare
AO353_06495 -3.1 -4.7 gamma-glutamyl phosphate reductase compare
AO353_04155 -3.1 -9.2 ornithine carbamoyltransferase compare
AO353_14500 -3.0 -5.4 acetolactate synthase 3 regulatory subunit compare
AO353_24340 -3.0 -2.9 TetR family transcriptional regulator compare
AO353_02710 -3.0 -9.2 (p)ppGpp synthetase compare
AO353_15925 -3.0 -11.5 2-isopropylmalate synthase compare
AO353_20665 -3.0 -8.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_14400 -2.9 -2.9 Fis family transcriptional regulator compare
AO353_08180 -2.9 -10.0 homoserine O-acetyltransferase compare
AO353_12075 -2.9 -6.5 imidazole glycerol phosphate synthase subunit HisH compare
AO353_05110 -2.9 -9.1 histidinol dehydrogenase compare
AO353_08165 -2.9 -2.0 pyrroline-5-carboxylate reductase compare
AO353_12500 -2.8 -1.9 shikimate kinase compare
AO353_10030 -2.8 -8.8 pyruvate carboxylase subunit A compare
AO353_27855 -2.7 -2.6 MarR family transcriptional regulator compare
AO353_10710 -2.7 -3.3 tryptophan synthase subunit beta compare
AO353_00310 -2.7 -7.7 transaldolase compare
AO353_22500 -2.7 -2.8 hypothetical protein compare
AO353_13100 -2.7 -1.8 GTPase RsgA compare
AO353_07155 -2.6 -4.8 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_14115 -2.6 -5.6 gamma-glutamyl kinase compare
AO353_04105 -2.6 -6.3 argininosuccinate synthase compare
AO353_09000 -2.6 -4.3 argininosuccinate lyase compare
AO353_17855 -2.5 -3.4 ribonuclease D compare
AO353_07220 -2.5 -7.2 anthranilate synthase compare
AO353_07525 -2.5 -11.1 biotin synthase compare
AO353_08475 -2.5 -7.9 phosphoserine phosphatase compare
AO353_10705 -2.4 -2.9 tryptophan synthase subunit alpha compare
AO353_09240 -2.4 -1.6 acetylglutamate kinase compare
AO353_03585 -2.4 -3.2 ATP-dependent DNA helicase RuvA compare
AO353_02250 -2.3 -3.2 chorismate synthase compare
AO353_12360 -2.3 -7.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_08015 -2.3 -5.7 5,10-methylenetetrahydrofolate reductase compare
AO353_00760 -2.2 -3.0 hypothetical protein compare
AO353_12090 -2.2 -2.1 imidazole glycerol phosphate synthase subunit HisF compare
AO353_24255 -2.2 -4.1 hypothetical protein compare
AO353_23495 -2.2 -2.6 SAM-dependent methyltransferase compare
AO353_04055 -2.2 -1.8 methionine--tRNA ligase compare
AO353_20175 -2.2 -2.9 ATP-dependent Clp protease proteolytic subunit compare
AO353_14940 -2.1 -3.3 malate:quinone oxidoreductase compare
AO353_12105 -2.1 -5.0 peptidase S41 compare
AO353_14595 -2.1 -7.5 carbonate dehydratase compare
AO353_10430 -2.1 -3.5 chromosome partitioning protein ParB compare
AO353_12460 -2.1 -6.8 malate dehydrogenase compare
AO353_00750 -2.1 -4.0 GntR family transcriptional regulator compare
AO353_03590 -2.1 -3.4 crossover junction endodeoxyribonuclease RuvC compare
AO353_12115 -2.1 -2.4 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_19060 -2.0 -4.7 CysB family transcriptional regulator compare
AO353_00620 -2.0 -2.0 cytochrome C oxidase Cbb3 compare
AO353_15640 -2.0 -3.0 acetylornithine aminotransferase compare
AO353_18285 -2.0 -2.7 3-phosphoglycerate kinase compare
AO353_00510 -2.0 -4.9 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_17750 -2.0 -2.6 transcriptional regulator compare
AO353_28495 -1.9 -2.9 hypothetical protein compare
AO353_06045 -1.9 -5.7 exodeoxyribonuclease V subunit beta compare
AO353_22370 -1.9 -3.8 branched-chain amino acid ABC transporter substrate-binding protein compare
AO353_28295 -1.9 -1.8 GNAT family acetyltransferase compare
AO353_03275 -1.9 -1.8 LysR family transcriptional regulator compare
AO353_03580 -1.9 -3.1 ATP-dependent DNA helicase RuvB compare
AO353_19360 -1.8 -2.5 peroxiredoxin compare
AO353_03630 -1.8 -9.7 porin compare
AO353_27650 -1.8 -4.2 cell division protein FtsK compare
AO353_11730 -1.8 -5.9 glutamate--cysteine ligase compare
AO353_07355 -1.8 -4.7 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_04220 -1.8 -5.0 chemotaxis protein CheY compare
AO353_11850 -1.8 -3.6 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_22520 -1.7 -1.8 hypothetical protein compare
AO353_26115 -1.7 -2.0 hypothetical protein compare
AO353_07505 -1.7 -6.4 dethiobiotin synthetase compare
AO353_05130 -1.7 -2.0 anti-anti-sigma factor compare
AO353_07555 -1.7 -2.5 glycine cleavage system protein R compare
AO353_15555 -1.7 -3.2 fumarylacetoacetase compare
AO353_02810 -1.7 -6.1 histidine kinase compare
AO353_07315 -1.7 -1.9 rRNA methyltransferase compare
AO353_06100 -1.6 -1.6 thymidylate synthase compare
AO353_09745 -1.6 -1.1 hypothetical protein compare
AO353_11775 -1.6 -5.1 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_22810 -1.6 -1.3 hypothetical protein compare
AO353_09885 -1.6 -2.0 transcriptional regulator PhoU compare
AO353_21625 -1.6 -2.1 Fe/S biogenesis protein NfuA compare
AO353_03605 -1.6 -1.3 FmdB family transcriptional regulator compare
AO353_04355 -1.6 -1.9 homoserine dehydrogenase compare
AO353_09260 -1.6 -5.1 ribonuclease PH compare
AO353_18540 -1.6 -2.1 pseudouridine synthase compare
AO353_20340 -1.6 -3.2 gamma-carboxygeranoyl-CoA hydratase compare
AO353_13160 -1.6 -2.1 membrane protease HflC compare
AO353_09345 -1.6 -1.8 hypothetical protein compare
AO353_11340 -1.6 -1.7 MarR family transcriptional regulator compare
AO353_16495 -1.6 -4.3 zinc metallopeptidase RseP compare
AO353_27180 -1.6 -2.9 peptidase M48, Ste24p compare
AO353_27940 -1.6 -4.1 succinyl-CoA--3-ketoacid-CoA transferase compare
AO353_00505 -1.5 -3.5 3-ketoacyl-CoA thiolase compare
AO353_03795 -1.5 -3.4 fumarate hydratase compare
AO353_07495 -1.5 -9.7 acyl-CoA dehydrogenase compare
AO353_12080 -1.5 -3.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
AO353_08980 -1.5 -2.9 heme biosynthesis operon protein HemX compare
AO353_00170 -1.5 -2.1 lysozyme compare
AO353_05550 -1.5 -4.5 pseudouridine synthase compare
AO353_07520 -1.5 -8.0 8-amino-7-oxononanoate synthase compare
AO353_16940 -1.5 -4.1 deoxycytidine triphosphate deaminase compare
AO353_02020 -1.5 -3.8 hypothetical protein compare
AO353_02935 -1.5 -3.3 ribose-phosphate pyrophosphokinase compare
AO353_02465 -1.5 -1.3 hypothetical protein compare
AO353_11530 -1.5 -5.8 diguanylate cyclase compare
AO353_14740 -1.5 -2.8 GTP-binding protein compare
AO353_10915 -1.5 -7.5 ABC transporter substrate-binding protein compare
AO353_08885 -1.5 -8.7 polyphosphate kinase compare
AO353_03250 -1.5 -1.9 gluconokinase compare
AO353_06050 -1.5 -5.0 exodeoxyribonuclease V subunit gamma compare
AO353_12690 -1.5 -1.0 acyl carrier protein compare
AO353_27930 -1.5 -3.3 LysR family transcriptional regulator compare
AO353_05530 -1.5 -3.6 hypothetical protein compare
AO353_08115 -1.5 -4.9 energy transducer TonB compare
AO353_07510 -1.4 -6.0 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_00825 -1.4 -3.1 porin compare
AO353_14420 -1.4 -3.4 molecular chaperone DnaK compare
AO353_04175 -1.4 -3.7 glycerol uptake facilitator GlpF compare
AO353_03595 -1.4 -3.1 hypothetical protein compare
AO353_14405 -1.4 -7.8 ATPase compare
AO353_17000 -1.4 -3.4 hypothetical protein compare
AO353_07560 -1.4 -7.3 malate synthase G compare
AO353_05105 -1.4 -5.5 histidinol-phosphate aminotransferase compare
AO353_10805 -1.4 -2.7 hypothetical protein compare
AO353_04365 -1.4 -3.4 recombinase XerD compare
AO353_06040 -1.4 -2.7 exodeoxyribonuclease V subunit alpha compare
AO353_09060 -1.4 -1.8 hypothetical protein compare
AO353_07445 -1.4 -1.5 pyrroloquinoline quinone biosynthesis protein PqqD compare
AO353_08045 -1.4 -7.6 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_00835 -1.4 -4.0 transporter compare
AO353_09320 -1.4 -5.9 ATP-dependent DNA helicase RecG compare
AO353_02330 -1.3 -1.7 allantoicase compare
AO353_11165 -1.3 -6.0 hypothetical protein compare
AO353_13085 -1.3 -3.1 histidine kinase compare
AO353_22955 -1.3 -1.8 tRNA hydroxylase compare
AO353_23620 -1.3 -1.3 hypothetical protein compare
AO353_22415 -1.3 -2.3 alcohol dehydrogenase compare
AO353_24130 -1.3 -1.8 hypothetical protein compare
AO353_10435 -1.3 -5.8 chromosome partitioning protein compare
AO353_10780 -1.3 -1.4 DNA-binding protein compare
AO353_23730 -1.3 -1.8 hypothetical protein compare
AO353_14775 -1.3 -4.2 hypothetical protein compare
AO353_10240 -1.3 -3.8 NAD-dependent dehydratase compare
AO353_24415 -1.3 -1.8 glutamine ABC transporter ATP-binding protein compare
AO353_26300 -1.3 -3.8 hypothetical protein compare
AO353_20185 -1.3 -4.2 DNA-binding protein compare
AO353_17885 -1.3 -1.7 hypothetical protein compare
AO353_13685 -1.3 -2.9 3-dehydroquinate dehydratase compare
AO353_14395 -1.3 -3.0 poly(A) polymerase compare
AO353_10900 -1.3 -5.3 hypothetical protein compare
AO353_08465 -1.3 -7.2 phosphoenolpyruvate-protein phosphotransferase compare
AO353_25260 -1.3 -2.1 hypothetical protein compare
AO353_08835 -1.3 -5.9 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
AO353_02005 -1.3 -1.2 hypothetical protein compare
AO353_25815 -1.3 -2.7 hypothetical protein compare
AO353_03150 -1.3 -2.6 peptidase M4 compare
AO353_27945 -1.3 -3.4 acetyl-CoA acetyltransferase compare
AO353_03710 -1.2 -2.2 formyltetrahydrofolate deformylase compare
AO353_06490 -1.2 -2.6 nicotinate-nucleotide adenylyltransferase compare
AO353_23140 -1.2 -2.7 aspartate dehydrogenase compare
AO353_04190 -1.2 -1.2 glycerol-3-phosphate dehydrogenase compare
AO353_26655 -1.2 -3.3 branched-chain amino acid aminotransferase compare
AO353_02940 -1.2 -2.2 DNA-binding protein compare
AO353_09720 -1.2 -1.0 hypothetical protein compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source L-Phenylalanine in Pseudomonas fluorescens FW300-N2E3

For carbon source L-Phenylalanine across organisms