Experiment set5IT005 for Pseudomonas fluorescens FW300-N2E3

Compare to:

L-Phenylalanine carbon source

200 most detrimental genes:

  gene name fitness t score description  
AO353_17945 +1.6 3.2 cyclic nucleotide-binding protein compare
AO353_13005 +1.4 10.7 channel protein TolC compare
AO353_01410 +1.3 4.8 ribonuclease E compare
AO353_03815 +1.3 2.1 heme utilization protein compare
AO353_18960 +1.3 2.9 terminase compare
AO353_16530 +1.3 2.0 ribonuclease HII compare
AO353_17100 +1.2 2.3 hypothetical protein compare
AO353_21830 +1.2 9.9 chemotaxis protein CheY compare
AO353_01060 +1.2 7.1 3-ketoacyl-ACP reductase compare
AO353_01065 +1.2 6.4 acetyl-CoA acetyltransferase compare
AO353_28815 +1.2 2.8 hypothetical protein compare
AO353_12650 +1.2 1.7 hypothetical protein compare
AO353_02735 +1.2 10.4 chemotaxis protein CheY compare
AO353_26525 +1.1 2.6 hypothetical protein compare
AO353_26390 +1.1 3.0 glyoxalase compare
AO353_04185 +1.1 5.5 DeoR family transcriptional regulator compare
AO353_11920 +1.1 1.7 hypothetical protein compare
AO353_01070 +1.1 9.1 poly(R)-hydroxyalkanoic acid synthase compare
AO353_24425 +1.1 2.3 amino acid ABC transporter permease compare
AO353_16360 +1.0 6.4 RND transporter compare
AO353_01055 +1.0 7.9 AraC family transcriptional regulator compare
AO353_16365 +1.0 8.4 multidrug transporter AcrB compare
AO353_01190 +1.0 1.5 hypothetical protein compare
AO353_12580 +1.0 1.6 type II secretory protein PulK compare
AO353_26100 +1.0 2.2 lysozyme compare
AO353_17410 +1.0 1.4 arylsulfate sulfotransferase compare
AO353_04810 +0.9 1.3 hypothetical protein compare
AO353_19760 +0.9 2.6 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
AO353_01915 +0.9 1.6 GlcG protein compare
AO353_22855 +0.9 2.6 hypothetical protein compare
AO353_27500 +0.9 1.5 hypothetical protein compare
AO353_19685 +0.9 2.5 alkylhydroperoxidase compare
AO353_07910 +0.9 1.4 hypothetical protein compare
AO353_09250 +0.9 2.2 exodeoxyribonuclease III compare
AO353_08875 +0.9 1.9 amino acid ABC transporter ATP-binding protein compare
AO353_20480 +0.9 3.2 hypothetical protein compare
AO353_22600 +0.9 1.1 hypothetical protein compare
AO353_21750 +0.9 1.3 peptidylprolyl isomerase compare
AO353_19340 +0.9 7.2 amino acid ABC transporter substrate-binding protein compare
AO353_11695 +0.9 2.4 hypothetical protein compare
AO353_03005 +0.9 3.1 succinylarginine dihydrolase compare
AO353_24260 +0.8 0.7 hypothetical protein compare
AO353_15410 +0.8 1.2 hypothetical protein compare
AO353_00810 +0.8 2.3 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) compare
AO353_09525 +0.8 3.7 ABC transporter ATP-binding protein compare
AO353_28015 +0.8 2.3 hypothetical protein compare
AO353_11155 +0.8 6.5 thioesterase compare
AO353_26220 +0.8 1.5 hypothetical protein compare
AO353_10725 +0.8 1.2 dodecin flavoprotein compare
AO353_26840 +0.8 2.3 RND transporter compare
AO353_12935 +0.8 2.6 glycosyltransferase compare
AO353_23410 +0.8 1.5 hypothetical protein compare
AO353_02520 +0.8 1.9 sodium transporter compare
AO353_27025 +0.8 2.5 2-nitropropane dioxygenase compare
AO353_26385 +0.8 2.6 hypothetical protein compare
AO353_12145 +0.8 2.8 nitrogen regulation protein NR(I) compare
AO353_21770 +0.7 1.4 3-hydroxybutyrate dehydrogenase compare
AO353_23400 +0.7 1.3 hypothetical protein compare
AO353_13660 +0.7 3.2 tRNA-dihydrouridine synthase B compare
AO353_26620 +0.7 1.9 ArsR family transcriptional regulator compare
AO353_15900 +0.7 1.5 GTP-binding protein compare
AO353_16755 +0.7 3.0 hydroxyacid dehydrogenase compare
AO353_29365 +0.7 1.5 paraquat-inducible protein A compare
AO353_16615 +0.7 5.7 RNA polymerase sigma factor RpoS compare
AO353_12540 +0.7 1.8 hypothetical protein compare
AO353_27160 +0.7 2.3 Pathogenicity locus compare
AO353_11135 +0.7 1.9 polyketide cyclase compare
AO353_21990 +0.7 2.1 cytochrome C compare
AO353_27380 +0.7 1.1 pyocin R2, holin compare
AO353_07745 +0.7 2.7 NADPH:quinone reductase compare
AO353_24790 +0.7 3.2 Cro/Cl family transcriptional regulator compare
AO353_06745 +0.7 1.6 zinc-binding protein compare
AO353_25585 +0.7 1.3 argininosuccinate lyase compare
AO353_11320 +0.7 2.7 hypothetical protein compare
AO353_19435 +0.7 1.7 TetR family transcriptional regulator compare
AO353_28320 +0.7 1.5 aminopeptidase compare
AO353_02220 +0.7 0.9 hypothetical protein compare
AO353_27525 +0.7 1.3 AraC family transcriptional regulator compare
AO353_12565 +0.7 1.3 type II secretion system protein GspH compare
AO353_20200 +0.7 2.0 peptidylprolyl isomerase compare
AO353_11945 +0.7 1.0 4-oxalocrotonate tautomerase compare
AO353_00065 +0.7 1.5 oxidoreductase compare
AO353_14355 +0.7 3.3 SAM-dependent methyltransferase compare
AO353_13575 +0.7 1.9 hypothetical protein compare
AO353_06365 +0.7 4.7 hypothetical protein compare
AO353_17085 +0.7 1.6 hypothetical protein compare
AO353_23335 +0.7 2.4 MATE family efflux transporter compare
AO353_26465 +0.7 2.0 hypothetical protein compare
AO353_27415 +0.7 1.5 hypothetical protein compare
AO353_20485 +0.6 2.5 hypothetical protein compare
AO353_01595 +0.6 1.6 Flp pilus assembly protein CpaB compare
AO353_18510 +0.6 1.6 hypothetical protein compare
AO353_04825 +0.6 2.5 hypothetical protein compare
AO353_21305 +0.6 1.6 glycolate oxidase compare
AO353_03540 +0.6 2.3 7-carboxy-7-deazaguanine synthase compare
AO353_24275 +0.6 1.0 transcriptional regulator compare
AO353_12700 +0.6 2.9 3-oxoacyl-ACP synthase compare
AO353_19280 +0.6 1.3 hypothetical protein compare
AO353_11160 +0.6 3.1 GntR family transcriptional regulator compare
AO353_22985 +0.6 1.4 hypothetical protein compare
AO353_25665 +0.6 2.2 3-hydroxy-isobutyryl-CoA hydrolase (EC 3.1.2.4) (from data) compare
AO353_22930 +0.6 1.5 hypothetical protein compare
AO353_09450 +0.6 2.1 type VI secretion protein compare
AO353_12720 +0.6 1.8 hypothetical protein compare
AO353_19770 +0.6 1.3 peptidase compare
AO353_29270 +0.6 1.5 type VI secretion system protein compare
AO353_01375 +0.6 3.0 phosphate acyltransferase compare
AO353_18040 +0.6 2.0 fimbrial chaperone protein compare
AO353_25035 +0.6 2.2 integrase compare
AO353_09560 +0.6 1.1 type VI secretion protein compare
AO353_00590 +0.6 2.3 cytochrome C oxidase Cbb3 compare
AO353_00250 +0.6 1.5 hypothetical protein compare
AO353_07905 +0.6 2.1 hypothetical protein compare
AO353_23950 +0.6 1.4 hypothetical protein compare
AO353_28640 +0.6 1.3 hypothetical protein compare
AO353_22150 +0.6 1.4 iron transporter compare
AO353_19375 +0.6 1.8 histidine kinase compare
AO353_28920 +0.6 3.6 hypothetical protein compare
AO353_25335 +0.6 0.8 malonate decarboxylase acyl carrier protein compare
AO353_12950 +0.6 3.0 polymerase compare
AO353_12880 +0.6 0.9 ADP-heptose--LPS heptosyltransferase compare
AO353_12730 +0.6 1.8 hypothetical protein compare
AO353_22135 +0.6 1.0 anaerobic ribonucleoside-triphosphate reductase activating protein compare
AO353_07935 +0.6 2.1 hypothetical protein compare
AO353_14955 +0.6 1.3 hypothetical protein compare
AO353_03260 +0.6 3.2 epimerase compare
AO353_22530 +0.6 1.9 hypothetical protein compare
AO353_14570 +0.6 2.1 chromosome partitioning protein compare
AO353_24740 +0.6 1.2 hypothetical protein compare
AO353_20700 +0.6 2.3 oxidoreductase compare
AO353_23835 +0.6 1.0 hypothetical protein compare
AO353_03100 +0.6 1.3 XRE family transcriptional regulator compare
AO353_28000 +0.6 1.4 branched-chain amino acid ABC transporter compare
AO353_03010 +0.6 2.2 succinylglutamate-semialdehyde dehydrogenase compare
AO353_08395 +0.6 2.4 FAD-dependent oxidoreductase compare
AO353_21585 +0.6 2.0 hydroxyacid dehydrogenase compare
AO353_25700 +0.6 1.3 hypothetical protein compare
AO353_15285 +0.5 3.4 hypothetical protein compare
AO353_18655 +0.5 1.7 flagellar assembly protein FliT compare
AO353_21355 +0.5 1.1 xylose isomerase compare
AO353_07105 +0.5 0.7 biotin--protein ligase compare
AO353_19020 +0.5 1.4 hypothetical protein compare
AO353_20800 +0.5 0.7 hypothetical protein compare
AO353_00405 +0.5 3.0 RND transporter compare
AO353_16020 +0.5 1.5 tRNA (cmo5U34)-methyltransferase compare
AO353_09275 +0.5 1.1 DNA-directed RNA polymerase subunit omega compare
AO353_12940 +0.5 2.6 glycosyl transferase compare
AO353_19490 +0.5 1.3 Fis family transcriptional regulator compare
AO353_21100 +0.5 1.6 DNA-binding protein compare
AO353_29180 +0.5 2.3 alpha/beta hydrolase compare
AO353_13480 +0.5 2.1 chaperone modulatory protein CbpM compare
AO353_22835 +0.5 1.8 antibiotic biosynthesis monooxygenase compare
AO353_13050 +0.5 1.6 DNA topoisomerase IV compare
AO353_12570 +0.5 1.7 type II secretion system protein GspI compare
AO353_21935 +0.5 1.0 nitrite reductase compare
AO353_23670 +0.5 1.4 glutathione S-transferase compare
AO353_09965 +0.5 2.0 AraC family transcriptional regulator compare
AO353_16450 +0.5 3.8 protein-PII uridylyltransferase compare
AO353_25415 +0.5 2.0 LysR family transcriptional regulator compare
AO353_28070 +0.5 2.1 LysR family transcriptional regulator compare
AO353_13405 +0.5 0.8 urease accessory protein UreF compare
AO353_21655 +0.5 1.1 cobalamin biosynthesis protein CobW compare
AO353_20390 +0.5 2.0 rhodanese compare
AO353_05490 +0.5 2.0 transcriptional regulator compare
AO353_23415 +0.5 1.5 lysine transporter LysE compare
AO353_25925 +0.5 1.0 hypothetical protein compare
AO353_12030 +0.5 1.5 hypothetical protein compare
AO353_04035 +0.5 1.6 exclusion suppressor FxsA compare
AO353_10160 +0.5 2.0 hypothetical protein compare
AO353_08130 +0.5 1.2 uracil phosphoribosyltransferase compare
AO353_23015 +0.5 1.7 histidine kinase compare
AO353_22595 +0.5 1.2 hypothetical protein compare
AO353_09395 +0.5 1.8 type VI secretion protein compare
AO353_22980 +0.5 1.8 hypothetical protein compare
AO353_09375 +0.5 2.0 protein phosphatase compare
AO353_06540 +0.5 0.9 hypothetical protein compare
AO353_26105 +0.5 1.4 structural protein P5 compare
AO353_23370 +0.5 1.6 cytochrome C compare
AO353_12835 +0.5 1.6 hypothetical protein compare
AO353_23160 +0.5 1.9 hydrolase compare
AO353_07250 +0.5 1.1 polyamine ABC transporter permease compare
AO353_20380 +0.5 2.6 acyl-CoA dehydrogenase compare
AO353_21320 +0.5 1.2 glutathione S-transferase compare
AO353_27885 +0.5 2.7 precorrin 6A synthase compare
AO353_08730 +0.5 2.1 glycine cleavage system protein H compare
AO353_28005 +0.5 1.6 branched-chain amino acid ABC transporter permease compare
AO353_14225 +0.5 3.0 laccase compare
AO353_26500 +0.5 2.6 hypothetical protein compare
AO353_12600 +0.5 1.6 LysR family transcriptional regulator compare
AO353_03935 +0.5 1.7 fructose-bisphosphate aldolase compare
AO353_05045 +0.5 2.2 1,2-oxophytodienoate reductase compare
AO353_14900 +0.5 2.7 amino acid ABC transporter substrate-binding protein compare
AO353_17365 +0.5 1.0 hypothetical protein compare
AO353_27520 +0.5 1.0 3-demethylubiquinone-9 3-methyltransferase compare
AO353_06790 +0.5 2.5 AraC family transcriptional regulator compare
AO353_16820 +0.5 1.1 hypothetical protein compare
AO353_18190 +0.5 2.4 LuxR family transcriptional regulator compare
AO353_06830 +0.5 2.2 hypothetical protein compare
AO353_19565 +0.5 1.2 vanillate O-demethylase oxidoreductase VanB compare
AO353_26195 +0.5 0.8 hypothetical protein compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source L-Phenylalanine in Pseudomonas fluorescens FW300-N2E3

For carbon source L-Phenylalanine across organisms