Experiment set5IT005 for Pseudomonas fluorescens FW300-N1B4

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Adenine hydrochloride hydrate nitrogen source

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_5665 -3.2 -3.7 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_1610 -3.1 -3.6 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf1N1B4_1434 -3.0 -5.9 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_5666 -3.0 -2.0 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_1307 -2.9 -2.7 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_2547 -2.6 -1.8 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_2880 -2.6 -7.0 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_2284 -2.6 -3.0 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf1N1B4_2112 -2.6 -8.7 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_1611 -2.5 -4.6 Nitrogen regulation protein NR(I) compare
Pf1N1B4_2338 -2.5 -5.4 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_6 -2.5 -2.3 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_1831 -2.5 -6.2 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_1408 -2.5 -3.6 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_2384 -2.5 -5.8 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_2303 -2.5 -8.8 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_12 -2.4 -4.8 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_1534 -2.4 -10.8 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_1624 -2.4 -5.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_2549 -2.4 -6.4 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_2337 -2.4 -3.1 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_3767 -2.4 -3.8 5-Hydroxyisourate Hydrolase (HIUase) (EC 3.5.2.17) compare
Pf1N1B4_1625 -2.3 -4.3 FIG00956267: hypothetical protein compare
Pf1N1B4_2009 -2.3 -2.7 LysR family transcriptional regulator PA5437 compare
Pf1N1B4_15 -2.3 -2.1 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_2010 -2.2 -4.0 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf1N1B4_3506 -2.2 -5.1 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_2548 -2.1 -3.2 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_3833 -2.1 -6.3 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_742 -2.1 -4.3 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_58 -2.1 -4.7 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_2489 -2.1 -4.8 Biotin synthesis protein BioH compare
Pf1N1B4_2488 -2.1 -5.5 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf1N1B4_1627 -2.1 -3.7 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_2545 -2.1 -7.1 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_1830 -2.0 -5.2 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_3518 -2.0 -2.5 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_2879 -2.0 -3.7 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_4065 -2.0 -5.8 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_2491 -2.0 -3.7 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf1N1B4_2874 -2.0 -2.4 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_2282 -1.9 -5.2 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_1067 -1.9 -3.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_3812 -1.9 -6.3 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_3907 -1.9 -2.0 FIG00953287: hypothetical protein compare
Pf1N1B4_350 -1.9 -4.4 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_1533 -1.8 -4.2 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_1626 -1.8 -3.9 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_3081 -1.8 -12.9 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_578 -1.8 -2.9 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_2272 -1.8 -2.1 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_2011 -1.8 -4.5 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf1N1B4_2377 -1.8 -4.0 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf1N1B4_2878 -1.8 -4.2 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_1565 -1.8 -2.5 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_1153 -1.8 -2.7 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf1N1B4_847 -1.8 -5.4 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_2490 -1.8 -4.5 Biotin synthesis protein BioC compare
Pf1N1B4_5224 -1.7 -3.4 tRNA-Arg-CCT compare
Pf1N1B4_2280 -1.7 -5.0 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_2858 -1.7 -6.4 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_3328 -1.7 -1.5 Rhodanese-like domain protein compare
Pf1N1B4_1057 -1.7 -3.0 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_3466 -1.7 -2.5 FIG00955605: hypothetical protein compare
Pf1N1B4_327 -1.7 -2.4 hypothetical protein compare
Pf1N1B4_1052 -1.7 -2.0 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Pf1N1B4_4603 -1.6 -2.6 hypothetical protein compare
Pf1N1B4_967 -1.6 -1.9 hypothetical protein compare
Pf1N1B4_1566 -1.6 -5.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_2465 -1.6 -2.5 Two-component response regulator CreB compare
Pf1N1B4_1535 -1.6 -2.6 hypothetical protein compare
Pf1N1B4_5018 -1.6 -2.3 FIG00962345: hypothetical protein compare
Pf1N1B4_1252 -1.6 -3.2 Adenosine deaminase (EC 3.5.4.4) compare
Pf1N1B4_3765 -1.6 -4.6 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) decarboxylase compare
Pf1N1B4_27 -1.6 -3.3 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf1N1B4_5829 -1.6 -1.2 FIG005107: hypothetical protein compare
Pf1N1B4_2487 -1.6 -4.3 Biotin synthase (EC 2.8.1.6) compare
Pf1N1B4_3153 -1.6 -1.8 hypothetical protein compare
Pf1N1B4_1315 -1.5 -4.8 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_1906 -1.5 -2.4 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_3508 -1.5 -3.9 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf1N1B4_5724 -1.5 -2.3 High-affinity iron permease compare
Pf1N1B4_1373 -1.5 -4.6 Urease accessory protein UreG compare
Pf1N1B4_4957 -1.5 -1.7 Transcriptional regulator, TetR family compare
Pf1N1B4_1348 -1.5 -2.0 Urease accessory protein UreD compare
Pf1N1B4_1653 -1.5 -4.3 Branched-chain amino acid transport protein AzlC compare
Pf1N1B4_1614 -1.4 -1.9 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf1N1B4_5187 -1.4 -1.5 5S RNA compare
Pf1N1B4_5084 -1.4 -2.9 Capsular polysaccharide synthesis enzyme CpsD, exopolysaccharide synthesis compare
Pf1N1B4_275 -1.4 -1.7 Organic hydroperoxide resistance transcriptional regulator compare
Pf1N1B4_3191 -1.4 -1.6 FIG00953505: hypothetical protein compare
Pf1N1B4_4980 -1.4 -1.8 putative lipoprotein compare
Pf1N1B4_4256 -1.4 -1.9 Probable transmembrane protein compare
Pf1N1B4_2269 -1.4 -2.5 Purine nucleoside phosphorylase (EC 2.4.2.1) compare
Pf1N1B4_3764 -1.4 -2.1 Allantoicase (EC 3.5.3.4) compare
Pf1N1B4_3279 -1.3 -2.5 putative membrane protein compare
Pf1N1B4_5645 -1.3 -2.9 Glutamine ABC transporter, periplasmic glutamine-binding protein (TC 3.A.1.3.2) compare
Pf1N1B4_4960 -1.3 -2.4 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf1N1B4_2208 -1.3 -4.3 Polyphosphate kinase (EC 2.7.4.1) compare
Pf1N1B4_1652 -1.3 -5.0 transcriptional regulator, LysR family compare
Pf1N1B4_5043 -1.3 -2.3 hypothetical protein compare
Pf1N1B4_825 -1.3 -1.9 tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase compare
Pf1N1B4_236 -1.3 -2.0 Molybdenum cofactor biosynthesis protein MoaB compare
Pf1N1B4_2105 -1.3 -1.5 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_4736 -1.3 -2.2 Fap amyloid fibril minor component compare
Pf1N1B4_716 -1.2 -2.7 Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites compare
Pf1N1B4_4979 -1.2 -2.3 Transcriptional regulator, AsnC family compare
Pf1N1B4_3129 -1.2 -1.6 Prophage baseplate assembly protein V compare
Pf1N1B4_3241 -1.2 -1.7 hypothetical protein compare
Pf1N1B4_2885 -1.2 -3.6 Paraquat-inducible protein A compare
Pf1N1B4_3038 -1.2 -3.7 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Pf1N1B4_652 -1.2 -5.5 Sensory box histidine kinase compare
Pf1N1B4_5531 -1.2 -2.3 hypothetical protein compare
Pf1N1B4_2850 -1.2 -4.1 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf1N1B4_4028 -1.2 -2.7 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_322 -1.2 -2.0 nucleotide sugar epimerase/dehydratase WbpM compare
Pf1N1B4_4107 -1.2 -1.7 Probable glutathione S-transferase (EC 2.5.1.18), YfcF homolog compare
Pf1N1B4_3152 -1.2 -3.8 LysR family transcriptional regulator PA3398 compare
Pf1N1B4_4419 -1.2 -1.7 Organosulfonate utilization protein SsuF compare
Pf1N1B4_718 -1.2 -4.2 outer membrane component of uptake system, probably for ferrous iron (from data) compare
Pf1N1B4_4257 -1.2 -1.6 L-serine dehydratase, (PLP)-dependent (EC 4.3.1.17) @ Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_3905 -1.2 -2.7 FIG00953423: hypothetical protein compare
Pf1N1B4_4627 -1.1 -2.0 FIG00957600: hypothetical protein compare
Pf1N1B4_3729 -1.1 -1.7 Quaternary ammonium compound-resistance protein SugE compare
Pf1N1B4_2244 -1.1 -1.8 Taurine-binding periplasmic protein TauA compare
Pf1N1B4_3768 -1.1 -1.7 Homoserine/homoserine lactone efflux protein compare
Pf1N1B4_626 -1.1 -4.0 Quinolinate synthetase (EC 2.5.1.72) compare
Pf1N1B4_1351 -1.1 -2.3 Tabtoxin resistance protein compare
Pf1N1B4_4860 -1.1 -2.0 Sensory box sensor histidine kinase/response regulator (EC 2.7.3.-) compare
Pf1N1B4_2884 -1.1 -2.9 Paraquat-inducible protein A compare
Pf1N1B4_2210 -1.1 -1.7 Glutamate transport ATP-binding protein compare
Pf1N1B4_438 -1.1 -2.5 hypothetical protein compare
Pf1N1B4_1353 -1.1 -2.1 Urease alpha subunit (EC 3.5.1.5) compare
Pf1N1B4_3991 -1.1 -1.5 Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family compare
Pf1N1B4_1 -1.1 -1.6 Colicin V production protein compare
Pf1N1B4_5864 -1.1 -1.4 Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF compare
Pf1N1B4_4667 -1.1 -2.2 Acriflavin resistance plasma membrane protein compare
Pf1N1B4_715 -1.1 -3.3 Iron-regulated protein A precursor compare
Pf1N1B4_4404 -1.1 -2.2 Transcriptional regulator, LysR family compare
Pf1N1B4_5813 -1.1 -1.5 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) compare
Pf1N1B4_4855 -1.1 -1.7 Response regulator compare
Pf1N1B4_6041 -1.0 -1.9 Carbon storage regulator compare
Pf1N1B4_717 -1.0 -4.1 Iron-regulated protein A precursor compare
Pf1N1B4_1371 -1.0 -3.7 Urease accessory protein UreE compare
Pf1N1B4_4477 -1.0 -1.8 Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase (EC 1.8.1.4) compare
Pf1N1B4_3766 -1.0 -3.5 Uricase (urate oxidase) (EC 1.7.3.3) compare
Pf1N1B4_2225 -1.0 -5.6 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Pf1N1B4_3627 -1.0 -1.3 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf1N1B4_2791 -1.0 -1.5 Putative inner membrane protein (Fragment) compare
Pf1N1B4_4253 -1.0 -1.4 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_5464 -1.0 -1.9 Cointegrate resolution protein T compare
Pf1N1B4_2873 -1.0 -2.3 hypothetical protein compare
Pf1N1B4_5463 -1.0 -1.8 hypothetical protein compare
Pf1N1B4_1332 -1.0 -1.9 Cobalt-precorrin-6 synthase, anaerobic compare
Pf1N1B4_5880 -1.0 -1.8 AttH component of AttEFGH ABC transport system compare
Pf1N1B4_4551 -1.0 -1.6 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179) compare
Pf1N1B4_4921 -1.0 -1.8 Haloacid dehalogenase, type II compare
Pf1N1B4_2854 -1.0 -2.2 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) compare
Pf1N1B4_5699 -1.0 -0.9 ABC-type uncharacterized transport system, ATPase component compare
Pf1N1B4_4544 -1.0 -1.4 Uncharacterized protein ImpA compare
Pf1N1B4_3445 -1.0 -2.1 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf1N1B4_232 -1.0 -1.7 DNA-binding response regulator, LuxR family compare
Pf1N1B4_1554 -0.9 -3.2 predicted FeS cluster maintenance protein (from data) compare
Pf1N1B4_5560 -0.9 -1.6 hypothetical protein compare
Pf1N1B4_4731 -0.9 -2.2 Sigma-54 dependent transcriptional regulator compare
Pf1N1B4_5151 -0.9 -1.9 FIG002283: Isochorismatase family protein compare
Pf1N1B4_4558 -0.9 -1.9 Outer membrane lipoprotein-sorting protein compare
Pf1N1B4_4560 -0.9 -1.6 Transcriptional regulator, MerR family compare
Pf1N1B4_5346 -0.9 -2.1 hypothetical protein compare
Pf1N1B4_2741 -0.9 -2.0 Hydrolase in polyol utilization gene cluster, haloacid dehalogenase-like family compare
Pf1N1B4_1837 -0.9 -1.1 Osmotically inducible protein C compare
Pf1N1B4_4673 -0.9 -1.8 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf1N1B4_5815 -0.9 -2.1 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) compare
Pf1N1B4_267 -0.9 -0.9 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf1N1B4_4134 -0.9 -1.4 Na+ driven multidrug efflux pump compare
Pf1N1B4_122 -0.9 -1.7 Inner membrane component of tripartite multidrug resistance system compare
Pf1N1B4_2794 -0.9 -1.3 FIG00953595: hypothetical protein compare
Pf1N1B4_5904 -0.9 -1.6 FIG00955320: hypothetical protein compare
Pf1N1B4_2783 -0.9 -1.4 Transcription elongation factor GreB-related protein compare
Pf1N1B4_2355 -0.9 -2.5 type IV pili signal transduction protein PilI compare
Pf1N1B4_2859 -0.9 -5.8 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf1N1B4_203 -0.9 -2.3 ABC transporter in pyoverdin gene cluster, periplasmic component compare
Pf1N1B4_5031 -0.9 -1.9 Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1) compare
Pf1N1B4_1374 -0.9 -1.8 HupE-UreJ family metal transporter compare
Pf1N1B4_4335 -0.9 -1.1 Putative translation initiation inhibitor, yjgF family compare
Pf1N1B4_3636 -0.9 -1.4 FIG00953562: hypothetical protein compare
Pf1N1B4_6036 -0.9 -1.6 FIG00953132: hypothetical protein compare
Pf1N1B4_4823 -0.9 -2.0 Paraquat-inducible protein A compare
Pf1N1B4_5661 -0.9 -3.4 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) compare
Pf1N1B4_875 -0.9 -1.5 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_5675 -0.9 -1.9 hypothetical protein compare
Pf1N1B4_5042 -0.9 -3.3 Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4) compare
Pf1N1B4_1679 -0.9 -1.1 Membrane-fusion protein compare
Pf1N1B4_762 -0.9 -2.1 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_4392 -0.9 -2.0 MocE compare
Pf1N1B4_1784 -0.9 -2.6 hypothetical protein compare
Pf1N1B4_5265 -0.9 -2.0 hypothetical protein compare
Pf1N1B4_2234 -0.9 -2.5 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
Pf1N1B4_3264 -0.9 -2.0 Methyltransferase (EC 2.1.1.-) compare
Pf1N1B4_5926 -0.9 -5.4 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For nitrogen source Adenine hydrochloride hydrate in Pseudomonas fluorescens FW300-N1B4

For nitrogen source Adenine hydrochloride hydrate across organisms