Experiment set5IT005 for Cupriavidus basilensis FW507-4G11

Compare to:

R2A with Vancomycin Hydrochloride Hydrate 0.5 mg/ml

200 most important genes:

  gene name fitness t score description  
RR42_RS14985 -3.7 -1.7 30S ribosomal protein S21 compare
RR42_RS04325 -3.7 -2.6 membrane protein compare
RR42_RS29280 -3.3 -1.5 hypothetical protein compare
RR42_RS27120 -3.2 -1.4 amino acid ABC transporter permease compare
RR42_RS18850 -3.1 -2.1 preprotein translocase subunit TatC compare
RR42_RS08330 -3.0 -1.4 hypothetical protein compare
RR42_RS05500 -3.0 -1.3 preprotein translocase subunit SecG compare
RR42_RS13125 -2.8 -1.9 pyrrolo-quinoline quinone compare
RR42_RS27915 -2.8 -1.9 acyl-CoA synthetase compare
RR42_RS33255 -2.7 -1.7 protein-tyrosine phosphatase compare
RR42_RS17355 -2.7 -1.2 hypothetical protein compare
RR42_RS18270 -2.7 -1.8 murein transglycosylase compare
RR42_RS24575 -2.6 -2.4 endoribonuclease L-PSP compare
RR42_RS08185 -2.5 -1.7 hypothetical protein compare
RR42_RS05905 -2.4 -2.0 hypothetical protein compare
RR42_RS15455 -2.3 -3.1 membrane protein compare
RR42_RS03670 -2.3 -2.1 isochorismatase compare
RR42_RS01255 -2.2 -5.7 lauroyl acyltransferase compare
RR42_RS27550 -2.2 -1.0 hypothetical protein compare
RR42_RS02775 -2.2 -1.5 molecular chaperone SurA compare
RR42_RS14080 -2.1 -7.0 RNA polymerase sigma factor RpoE compare
RR42_RS01260 -2.1 -5.6 lauroyl acyltransferase compare
RR42_RS11770 -2.1 -1.4 cyclase compare
RR42_RS24690 -2.1 -1.3 hypothetical protein compare
RR42_RS15800 -2.1 -3.4 aldo/keto reductase compare
RR42_RS17620 -2.0 -4.0 phosphatidylglycerophosphatase compare
RR42_RS23120 -2.0 -2.4 hypothetical protein compare
RR42_RS17560 -2.0 -5.8 Fur family transcriptional regulator compare
RR42_RS19045 -2.0 -1.2 frataxin compare
RR42_RS01485 -1.9 -2.2 phosphonate transporter compare
RR42_RS23565 -1.9 -0.8 flagellar motor switch protein G compare
RR42_RS30675 -1.9 -2.9 hypothetical protein compare
RR42_RS08805 -1.9 -2.2 nitrate reductase compare
RR42_RS16950 -1.9 -3.8 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
RR42_RS06810 -1.8 -2.2 hypothetical protein compare
RR42_RS07555 -1.8 -1.3 potassium transporter Kup compare
RR42_RS04205 -1.8 -1.7 glycine cleavage system regulatory protein compare
RR42_RS33850 -1.8 -2.1 hypothetical protein compare
RR42_RS20925 -1.8 -1.6 Crp/Fnr family transcriptional regulator compare
RR42_RS19885 -1.8 -1.2 aminoglycoside transporter compare
RR42_RS05885 -1.8 -4.7 hypothetical protein compare
RR42_RS06345 -1.8 -3.7 hypothetical protein compare
RR42_RS14480 -1.8 -2.9 hypothetical protein compare
RR42_RS15795 -1.7 -3.1 spore coat protein compare
RR42_RS13910 -1.7 -4.9 glutamate racemase compare
RR42_RS02705 -1.7 -1.8 Holliday junction DNA helicase RuvA compare
RR42_RS00830 -1.7 -3.8 cell division protein FtsN compare
RR42_RS22600 -1.7 -1.7 heavy metal resistance protein CzcE compare
RR42_RS21690 -1.7 -1.0 acetyltransferase compare
RR42_RS27160 -1.7 -1.7 acetyl-CoA acetyltransferase compare
RR42_RS17390 -1.6 -4.8 ATP-dependent DNA helicase RecG compare
RR42_RS06255 -1.6 -1.5 lipoprotein compare
RR42_RS13360 -1.6 -5.5 esterase compare
RR42_RS22990 -1.6 -2.8 23S ribosomal RNA compare
RR42_RS18855 -1.6 -1.1 preprotein translocase compare
RR42_RS21220 -1.6 -1.5 iron transporter FeoB compare
RR42_RS24760 -1.6 -1.0 hypothetical protein compare
RR42_RS19895 -1.5 -1.4 elongation factor GreAB compare
RR42_RS15020 -1.5 -6.7 (2Fe-2S)-binding protein compare
RR42_RS02420 -1.5 -0.9 SAM-dependent methyltransferase compare
RR42_RS27090 -1.5 -1.8 chemotaxis protein CheV compare
RR42_RS06860 -1.5 -1.3 hypothetical protein compare
RR42_RS03170 -1.5 -4.0 hypothetical protein compare
RR42_RS09360 -1.5 -2.0 alpha/beta hydrolase compare
RR42_RS13040 -1.5 -3.4 iron transporter compare
RR42_RS31900 -1.5 -1.7 short-chain dehydrogenase compare
RR42_RS10150 -1.4 -1.5 hypothetical protein compare
RR42_RS01920 -1.4 -2.2 protoheme IX farnesyltransferase compare
RR42_RS20655 -1.4 -4.9 multidrug transporter compare
RR42_RS04850 -1.4 -1.9 hypothetical protein compare
RR42_RS16275 -1.4 -2.3 membrane protein compare
RR42_RS13565 -1.4 -8.9 lytic transglycosylase compare
RR42_RS15525 -1.4 -0.9 hypothetical protein compare
RR42_RS15480 -1.4 -3.3 acyl-CoA thioesterase compare
RR42_RS18385 -1.4 -2.0 hypothetical protein compare
RR42_RS23595 -1.4 -1.6 dTDP-4-dehydrorhamnose 3,5-epimerase compare
RR42_RS04180 -1.4 -1.5 methyltransferase compare
RR42_RS03035 -1.4 -1.0 membrane protein compare
RR42_RS28745 -1.4 -1.6 hypothetical protein compare
RR42_RS27910 -1.3 -2.6 Crp/Fnr family transcriptional regulator compare
RR42_RS13130 -1.3 -1.6 membrane protein compare
RR42_RS07150 -1.3 -1.0 hypothetical protein compare
RR42_RS28425 -1.3 -2.0 3-hydroxybutyryl-CoA dehydratase compare
RR42_RS24490 -1.3 -1.4 hypothetical protein compare
RR42_RS08240 -1.3 -2.7 DNA-binding protein compare
RR42_RS31850 -1.3 -1.6 2-keto-4-pentenoate hydratase compare
RR42_RS31285 -1.3 -1.3 XRE family transcriptional regulator compare
RR42_RS29780 -1.3 -1.5 hypothetical protein compare
RR42_RS04765 -1.3 -1.8 3-oxoacyl-ACP reductase compare
RR42_RS14925 -1.3 -3.5 hypothetical protein compare
RR42_RS08085 -1.3 -2.1 hypothetical protein compare
RR42_RS07565 -1.3 -4.3 transcription accessory protein compare
RR42_RS20440 -1.3 -0.8 histidine kinase compare
RR42_RS34335 -1.3 -1.9 hypothetical protein compare
RR42_RS01720 -1.3 -2.0 membrane protein compare
RR42_RS35720 -1.3 -1.7 flagellar basal body rod protein FlgC compare
RR42_RS19735 -1.3 -2.4 hypothetical protein compare
RR42_RS06250 -1.3 -0.9 dihydrodipicolinate synthase compare
RR42_RS13195 -1.2 -5.4 protein-L-isoaspartate O-methyltransferase compare
RR42_RS18730 -1.2 -1.7 hypothetical protein compare
RR42_RS14965 -1.2 -2.0 hypothetical protein compare
RR42_RS06315 -1.2 -2.7 RNA methyltransferase compare
RR42_RS33240 -1.2 -6.0 GDP-L-fucose synthase compare
RR42_RS21755 -1.2 -1.7 shikimate dehydrogenase compare
RR42_RS30410 -1.2 -1.2 hypothetical protein compare
RR42_RS31080 -1.2 -2.0 hypothetical protein compare
RR42_RS16620 -1.2 -2.1 hypothetical protein compare
RR42_RS26875 -1.2 -0.9 LysR family transcriptional regulator compare
RR42_RS16335 -1.2 -1.3 hypothetical protein compare
RR42_RS01290 -1.2 -3.6 thiamine biosynthesis protein ThiC compare
RR42_RS15790 -1.2 -3.8 aminotransferase class III compare
RR42_RS15465 -1.2 -1.3 TonB-dependent receptor compare
RR42_RS18965 -1.2 -7.1 ABC transporter permease compare
RR42_RS16370 -1.2 -3.2 glutamine ABC transporter ATP-binding protein compare
RR42_RS13830 -1.2 -0.9 hypothetical protein compare
RR42_RS21630 -1.2 -1.1 Asp/Glu racemase compare
RR42_RS14360 -1.2 -0.6 tryptophan synthase subunit alpha compare
RR42_RS10920 -1.1 -1.3 hypothetical protein compare
RR42_RS01925 -1.1 -4.9 photosynthetic protein synthase I compare
RR42_RS05620 -1.1 -1.8 esterase compare
RR42_RS21945 -1.1 -1.8 hypothetical protein compare
RR42_RS26220 -1.1 -1.4 citrate lyase subunit beta compare
RR42_RS16910 -1.1 -1.1 histidine utilization protein HutD compare
RR42_RS15740 -1.1 -1.1 hypothetical protein compare
RR42_RS35020 -1.1 -2.4 rubredoxin compare
RR42_RS17725 -1.1 -3.9 membrane protein compare
RR42_RS15735 -1.1 -4.8 pyridoxal phosphate-dependent aminotransferase compare
RR42_RS02950 -1.1 -1.3 malonate decarboxylase subunit beta compare
RR42_RS21685 -1.1 -1.8 hypothetical protein compare
RR42_RS23650 -1.1 -1.4 flagellar protein compare
RR42_RS17685 -1.1 -4.7 alkyl hydroperoxide reductase compare
RR42_RS34305 -1.1 -1.9 glutamine ABC transporter ATP-binding protein compare
RR42_RS18970 -1.1 -4.9 toluene ABC transporter ATP-binding protein compare
RR42_RS08180 -1.1 -0.8 hypothetical protein compare
RR42_RS32785 -1.1 -1.8 chemotaxis protein compare
RR42_RS12695 -1.1 -2.3 hypothetical protein compare
RR42_RS17555 -1.1 -0.9 hypothetical protein compare
RR42_RS15475 -1.1 -2.1 protein tolQ compare
RR42_RS03920 -1.1 -1.7 rubredoxin compare
RR42_RS29490 -1.1 -1.0 toxin HipA compare
RR42_RS03250 -1.1 -1.9 MarR family transcriptional regulator compare
RR42_RS02225 -1.1 -2.7 ABC transporter substrate-binding protein compare
RR42_RS33260 -1.1 -2.7 multidrug MFS transporter compare
RR42_RS12870 -1.1 -1.7 membrane protein compare
RR42_RS12835 -1.1 -3.1 tRNA pseudouridine synthase B compare
RR42_RS02500 -1.1 -1.2 TetR family transcriptional regulator compare
RR42_RS32585 -1.0 -0.7 cytochrome C oxidase compare
RR42_RS07590 -1.0 -3.2 pseudouridine synthase compare
RR42_RS01385 -1.0 -1.7 5,10-methylenetetrahydrofolate reductase compare
RR42_RS03910 -1.0 -1.2 (2Fe-2S)-binding protein compare
RR42_RS05310 -1.0 -2.5 hypothetical protein compare
RR42_RS30310 -1.0 -1.0 signal transduction protein compare
RR42_RS14700 -1.0 -2.3 hypothetical protein compare
RR42_RS34520 -1.0 -0.6 transposase compare
RR42_RS09675 -1.0 -2.7 hypothetical protein compare
RR42_RS27865 -1.0 -3.8 transcriptional regulator compare
RR42_RS21180 -1.0 -1.5 GNAT family acetyltransferase compare
RR42_RS15460 -1.0 -2.0 translocation protein TolB compare
RR42_RS18605 -1.0 -2.2 sugar ABC transporter permease compare
RR42_RS20205 -1.0 -1.4 chromosome partitioning protein compare
RR42_RS04320 -1.0 -2.0 cell division protein FtsK compare
RR42_RS14365 -1.0 -1.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS15470 -1.0 -0.9 biopolymer transporter ExbD compare
RR42_RS33815 -1.0 -0.8 isochorismatase compare
RR42_RS28315 -1.0 -2.2 GntR family transcriptional regulator compare
RR42_RS32740 -1.0 -0.8 enoyl-CoA hydratase compare
RR42_RS19745 -1.0 -1.3 RlpA-like protein compare
RR42_RS37115 -1.0 -1.4 hypothetical protein compare
RR42_RS04135 -1.0 -0.7 pilus assembly protein CpaB compare
RR42_RS06325 -1.0 -0.9 serine O-acetyltransferase compare
RR42_RS33210 -1.0 -2.4 teichoic acid biosynthesis protein compare
RR42_RS25765 -1.0 -1.8 hypothetical protein compare
RR42_RS20195 -1.0 -0.6 ATPase F0F1 compare
RR42_RS34185 -1.0 -1.9 hypothetical protein compare
RR42_RS09060 -1.0 -1.0 glucose-6-phosphate isomerase compare
RR42_RS34115 -1.0 -1.7 hypothetical protein compare
RR42_RS36305 -1.0 -2.2 TetR family transcriptional regulator compare
RR42_RS34925 -1.0 -2.7 aldehyde dehydrogenase compare
RR42_RS15015 -1.0 -0.6 exodeoxyribonuclease VII small subunit compare
RR42_RS10310 -1.0 -1.0 NADPH:quinone reductase compare
RR42_RS31820 -1.0 -1.8 short-chain dehydrogenase compare
RR42_RS28015 -1.0 -2.4 phosphonate ABC transporter permease compare
RR42_RS03145 -1.0 -4.7 peptidase M48 compare
RR42_RS05670 -1.0 -1.2 urease subunit beta compare
RR42_RS03570 -1.0 -2.7 membrane protein compare
RR42_RS03080 -1.0 -1.8 recombinase RecA compare
RR42_RS04735 -1.0 -0.8 hypothetical protein compare
RR42_RS22150 -1.0 -1.7 thiol-disulfide isomerase compare
RR42_RS22425 -1.0 -2.5 CDP-alcohol phosphatidyltransferase compare
RR42_RS15775 -1.0 -2.3 N-acetylneuraminate synthase compare
RR42_RS11280 -1.0 -0.8 phenylacetic acid degradation protein compare
RR42_RS09580 -1.0 -0.7 hypothetical protein compare
RR42_RS13595 -0.9 -1.4 hypothetical protein compare
RR42_RS29505 -0.9 -1.6 hypothetical protein compare
RR42_RS14540 -0.9 -1.7 DNA glycosylase compare
RR42_RS06405 -0.9 -2.0 membrane protein compare
RR42_RS36260 -0.9 -4.9 membrane protein compare
RR42_RS27790 -0.9 -1.4 LuxR family transcriptional regulator compare
RR42_RS28395 -0.9 -2.8 DNA-binding protein compare
RR42_RS20350 -0.9 -1.9 hypothetical protein compare


Specific Phenotypes

For 11 genes in this experiment

For stress Vancomycin Hydrochloride Hydrate in Cupriavidus basilensis FW507-4G11

For stress Vancomycin Hydrochloride Hydrate across organisms