Experiment set5IT004 for Pantoea sp. MT58

Compare to:

Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_09235 -4.1 -2.0 type I DNA topoisomerase compare
IAI47_08085 -3.8 -5.1 helix-turn-helix domain-containing protein compare
IAI47_05420 -3.6 -1.5 PTS glucose transporter subunit IIA compare
IAI47_13745 -3.5 -4.7 2-oxoglutarate dehydrogenase E1 component compare
IAI47_13885 -3.3 -1.6 N-acetylglucosamine-6-phosphate deacetylase compare
IAI47_15605 -3.2 -2.1 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
IAI47_10320 -3.2 -1.1 Rrf2 family transcriptional regulator compare
IAI47_19550 -2.7 -2.0 DUF1471 domain-containing protein compare
IAI47_18715 -2.6 -2.3 YibL family ribosome-associated protein compare
IAI47_00780 -2.5 -2.5 6-phosphofructokinase compare
IAI47_00870 -2.5 -0.9 50S ribosomal protein L31 compare
IAI47_01365 -2.4 -1.7 inorganic phosphate transporter PitA compare
IAI47_18240 -2.4 -1.7 NAD(P)H-flavin reductase compare
IAI47_11515 -2.4 -1.9 hypothetical protein compare
IAI47_03820 -2.3 -3.7 site-specific tyrosine recombinase XerD compare
IAI47_07165 -2.3 -2.5 exodeoxyribonuclease I compare
IAI47_14470 -2.3 -2.6 YbaB/EbfC family nucleoid-associated protein compare
IAI47_07020 -2.2 -1.0 hypothetical protein compare
IAI47_13765 -2.2 -2.1 succinate dehydrogenase cytochrome b556 subunit compare
IAI47_17035 -2.2 -2.5 ribosome maturation factor RimP compare
IAI47_15635 -2.2 -3.0 RNA polymerase-binding protein DksA compare
IAI47_05035 -2.1 -2.5 nucleoside-diphosphate kinase compare
IAI47_04400 -2.1 -4.8 3-deoxy-7-phosphoheptulonate synthase compare
IAI47_09580 -2.0 -3.3 FNR family transcription factor compare
IAI47_02350 -2.0 -1.1 tRNA-Thr compare
IAI47_04300 -2.0 -7.3 recombinase RecA compare
IAI47_12375 -1.9 -1.4 acyl carrier protein compare
IAI47_19945 -1.9 -0.8 hypothetical protein compare
IAI47_15110 -1.9 -5.3 chromophore lyase compare
IAI47_08040 -1.9 -2.4 hypothetical protein compare
IAI47_11310 -1.9 -3.8 redox-regulated ATPase YchF compare
IAI47_04895 -1.8 -3.6 pyridoxine 5'-phosphate synthase compare
IAI47_16390 -1.8 -0.8 tRNA-Leu compare
IAI47_04835 -1.7 -7.3 ATP-dependent RNA helicase SrmB compare
IAI47_11450 -1.7 -4.5 ankyrin repeat domain-containing protein compare
IAI47_06965 -1.7 -1.0 glycosyltransferase family 2 protein compare
IAI47_20705 -1.6 -0.9 sulfur carrier protein ThiS compare
IAI47_02880 -1.6 -5.3 DUF883 domain-containing protein compare
IAI47_16995 -1.6 -1.5 protein YrbN compare
IAI47_06320 -1.6 -5.9 phosphate acetyltransferase compare
IAI47_18830 -1.6 -0.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_10840 -1.5 -4.0 pyruvate kinase PykF compare
IAI47_13695 -1.5 -0.3 colicin uptake protein TolR compare
IAI47_10470 -1.5 -2.1 electron transport complex subunit E compare
IAI47_04425 -1.5 -6.8 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
IAI47_11415 -1.5 -1.1 hypothetical protein compare
IAI47_18055 -1.5 -4.3 DNA-binding protein HU-alpha compare
IAI47_13840 -1.5 -2.6 replication initiation negative regulator SeqA compare
IAI47_18840 -1.5 -2.1 membrane protein insertion efficiency factor YidD compare
IAI47_06245 -1.5 -3.5 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_00655 -1.5 -4.2 glycosyltransferase family 4 protein compare
IAI47_12865 -1.5 -7.3 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_11475 -1.5 -0.9 hypothetical protein compare
IAI47_18530 -1.4 -2.5 thioredoxin TrxA compare
IAI47_19710 -1.4 -3.3 helix-turn-helix transcriptional regulator compare
IAI47_15485 -1.4 -1.0 molecular chaperone Skp compare
IAI47_18265 -1.4 -1.3 Sec-independent protein translocase subunit TatB compare
IAI47_14190 -1.4 -2.8 DUF2171 domain-containing protein compare
IAI47_06380 -1.4 -2.5 NADH-quinone oxidoreductase subunit NuoF compare
IAI47_03240 -1.3 -3.3 TonB system transport protein ExbD compare
IAI47_17120 -1.3 -1.8 BolA family iron metabolism protein IbaG compare
IAI47_09210 -1.3 -5.0 23S rRNA pseudouridine(2605) synthase RluB compare
IAI47_06420 -1.3 -3.4 NADH-quinone oxidoreductase subunit NuoN compare
IAI47_10520 -1.3 -2.5 pyridoxamine 5'-phosphate oxidase compare
IAI47_19050 -1.3 -2.4 hypothetical protein compare
IAI47_04800 -1.3 -0.6 RnfH family protein compare
IAI47_00460 -1.2 -1.5 glutamate--ammonia ligase compare
IAI47_10775 -1.2 -3.3 ribonuclease T compare
IAI47_14200 -1.2 -2.5 hypothetical protein compare
IAI47_10825 -1.2 -1.1 tRNA-Val compare
IAI47_07885 -1.2 -1.0 tRNA-Asn compare
IAI47_14545 -1.2 -3.7 hypothetical protein compare
IAI47_17020 -1.2 -2.1 30S ribosome-binding factor RbfA compare
IAI47_18400 -1.2 -1.7 tyrosine recombinase XerC compare
IAI47_06410 -1.2 -4.1 NADH-quinone oxidoreductase subunit L compare
IAI47_07525 -1.2 -2.5 conjugal transfer protein TraD compare
IAI47_17900 -1.1 -1.1 glycerol-3-phosphate 1-O-acyltransferase PlsB compare
IAI47_06135 -1.1 -2.9 phosphohistidine phosphatase SixA compare
IAI47_12060 -1.1 -3.3 beta-ketoacyl-ACP synthase II compare
IAI47_08435 -1.1 -2.4 YebC/PmpR family DNA-binding transcriptional regulator compare
IAI47_06405 -1.1 -2.1 NADH-quinone oxidoreductase subunit NuoK compare
IAI47_06360 -1.1 -1.5 NADH-quinone oxidoreductase subunit A compare
IAI47_08600 -1.1 -3.2 TraR/DksA C4-type zinc finger protein compare
IAI47_03375 -1.0 -4.9 peptide chain release factor 3 compare
IAI47_06390 -1.0 -2.4 NADH-quinone oxidoreductase subunit NuoH compare
IAI47_15970 -1.0 -1.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
IAI47_12885 -1.0 -3.9 pyruvate formate lyase 1-activating protein compare
IAI47_12140 -1.0 -4.7 flagellar basal-body rod protein FlgG compare
IAI47_09360 -1.0 -0.7 peptide ABC transporter ATP-binding protein SapF compare
IAI47_07470 -1.0 -1.4 AlpA family transcriptional regulator compare
IAI47_03805 -1.0 -4.0 FAD assembly factor SdhE compare
IAI47_18675 -1.0 -4.0 MarR family transcriptional regulator compare
IAI47_06235 -1.0 -3.7 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_11500 -1.0 -1.6 type VI secretion system tip protein VgrG compare
IAI47_14210 -1.0 -2.6 hypothetical protein compare
IAI47_06450 -1.0 -2.4 ribonucleotide-diphosphate reductase subunit beta compare
IAI47_08160 -1.0 -5.9 RNA polymerase sigma factor FliA compare
IAI47_13545 -1.0 -4.8 6-phosphogluconolactonase compare
IAI47_06385 -1.0 -2.9 NADH-quinone oxidoreductase subunit NuoG compare
IAI47_04545 -1.0 -2.4 glutaredoxin-like protein NrdH compare
IAI47_01780 -1.0 -1.6 Fe-S biogenesis protein NfuA compare
IAI47_03680 -1.0 -4.8 transketolase compare
IAI47_10145 -1.0 -1.7 winged helix-turn-helix transcriptional regulator compare
IAI47_13310 -1.0 -3.8 MerR family transcriptional regulator compare
IAI47_16990 -1.0 -1.9 DEAD/DEAH family ATP-dependent RNA helicase compare
IAI47_05745 -0.9 -1.0 protease FtsH-inhibitory lysogeny factor CIII compare
IAI47_12570 -0.9 -0.6 tRNA-Ser compare
IAI47_11675 -0.9 -4.7 type VI secretion system-associated protein TagF compare
IAI47_18420 -0.9 -4.9 class I adenylate cyclase compare
IAI47_12880 -0.9 -6.1 formate C-acetyltransferase compare
IAI47_03575 -0.9 -3.3 DUF2884 domain-containing protein compare
IAI47_09055 -0.9 -4.6 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_00430 -0.9 -5.8 DNA polymerase I compare
IAI47_12355 -0.9 -0.7 hydroxymyristoyl-ACP dehydratase compare
IAI47_00760 -0.9 -1.8 envelope stress response regulator transcription factor CpxR compare
IAI47_06370 -0.9 -2.4 NADH-quinone oxidoreductase subunit C/D compare
IAI47_20240 -0.9 -2.9 sigma-70 family RNA polymerase sigma factor compare
IAI47_19725 -0.9 -2.6 chemotaxis protein compare
IAI47_09530 -0.9 -3.8 acid resistance repetitive basic protein Asr compare
IAI47_07350 -0.9 -0.4 hypothetical protein compare
IAI47_17185 -0.9 -3.0 RNA polymerase factor sigma-54 compare
IAI47_02515 -0.9 -2.4 transcriptional regulator ArgR compare
IAI47_06415 -0.8 -2.7 NADH-quinone oxidoreductase subunit M compare
IAI47_10285 -0.8 -4.5 SrfC compare
IAI47_10835 -0.8 -0.7 tRNA-Val compare
IAI47_13750 -0.8 -1.6 succinate dehydrogenase iron-sulfur subunit compare
IAI47_09395 -0.8 -1.2 phage shock protein PspA compare
IAI47_15810 -0.8 -2.0 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
IAI47_15005 -0.8 -1.1 hypothetical protein compare
IAI47_08445 -0.8 -0.6 Holliday junction branch migration protein RuvA compare
IAI47_00465 -0.8 -0.6 ribosome-dependent GTPase TypA compare
IAI47_21450 -0.8 -1.1 general stress protein compare
IAI47_04350 -0.8 -5.8 glutamate--cysteine ligase compare
IAI47_07980 -0.8 -4.1 flagellar type III secretion system pore protein FliP compare
IAI47_21115 -0.8 -1.2 arsenate reductase (glutaredoxin) compare
IAI47_06325 -0.8 -2.5 acetate kinase compare
IAI47_08200 -0.8 -1.7 hypothetical protein compare
IAI47_12145 -0.8 -4.0 flagellar basal body rod protein FlgF compare
IAI47_11760 -0.8 -0.6 TonB-dependent siderophore receptor compare
IAI47_05490 -0.8 -2.3 tRNA-Val compare
IAI47_08005 -0.8 -3.9 flagellar hook-length control protein FliK compare
IAI47_03630 -0.8 -2.3 SprT family zinc-dependent metalloprotease compare
IAI47_01875 -0.8 -1.5 hypothetical protein compare
IAI47_15235 -0.8 -1.2 hydroxyisourate hydrolase compare
IAI47_17005 -0.8 -2.9 polyribonucleotide nucleotidyltransferase compare
IAI47_19350 -0.8 -2.4 DUF305 domain-containing protein compare
IAI47_00515 -0.8 -1.0 DNA-directed RNA polymerase subunit omega compare
IAI47_05185 -0.8 -2.5 uracil phosphoribosyltransferase compare
IAI47_19510 -0.8 -2.2 hypothetical protein compare
IAI47_09245 -0.8 -1.4 YmiA family putative membrane protein compare
IAI47_11880 -0.8 -1.1 hypothetical protein compare
IAI47_02345 -0.8 -0.6 5S ribosomal RNA compare
IAI47_16080 -0.8 -3.2 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_17965 -0.8 -3.7 glucose-6-phosphate isomerase compare
IAI47_14700 -0.8 -3.2 protoheme IX farnesyltransferase compare
IAI47_08135 -0.8 -3.7 flagellar export chaperone FliS compare
IAI47_07985 -0.8 -2.8 flagellar biosynthetic protein FliO compare
IAI47_05150 -0.7 -3.1 exopolyphosphatase compare
IAI47_08025 -0.7 -3.3 flagellar motor switch protein FliG compare
IAI47_19970 -0.7 -3.2 amidohydrolase compare
IAI47_01180 -0.7 -0.9 prolyl oligopeptidase family serine peptidase compare
IAI47_02380 -0.7 -0.9 DNA-binding transcriptional regulator Fis compare
IAI47_07990 -0.7 -2.6 flagellar motor switch protein FliN compare
IAI47_06365 -0.7 -1.7 NADH-quinone oxidoreductase subunit B compare
IAI47_05090 -0.7 -2.0 hypothetical protein compare
IAI47_09955 -0.7 -1.8 SDR family oxidoreductase compare
IAI47_09690 -0.7 -2.8 HTH-type transcriptional activator RhaR compare
IAI47_07490 -0.7 -1.9 DNA-binding protein compare
IAI47_02305 -0.7 -2.4 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
IAI47_09615 -0.7 -2.3 LysR family transcriptional regulator compare
IAI47_07750 -0.7 -2.2 phosphonate metabolism transcriptional regulator PhnF compare
IAI47_12135 -0.7 -4.8 flagellar basal body L-ring protein FlgH compare
IAI47_19525 -0.7 -3.5 hypothetical protein compare
IAI47_00945 -0.7 -2.0 YijD family membrane protein compare
IAI47_20555 -0.7 -2.0 ATP-binding cassette domain-containing protein compare
IAI47_04695 -0.7 -2.4 hypothetical protein compare
IAI47_12130 -0.7 -4.5 flagellar basal body P-ring protein FlgI compare
IAI47_13560 -0.7 -2.3 molybdate ABC transporter permease subunit compare
IAI47_01380 -0.7 -1.8 hypothetical protein compare
IAI47_07015 -0.7 -2.1 ABC transporter ATP-binding protein compare
IAI47_10790 -0.7 -1.5 YnhF family membrane protein compare
IAI47_08280 -0.7 -3.7 flagellar transcriptional regulator FlhD compare
IAI47_09635 -0.7 -1.8 hypothetical protein compare
IAI47_11470 -0.7 -2.2 IS1 family transposase compare
IAI47_12175 -0.7 -1.2 anti-sigma-28 factor FlgM compare
IAI47_06655 -0.7 -1.3 1-phosphofructokinase compare
IAI47_14350 -0.7 -2.3 5-(carboxyamino)imidazole ribonucleotide mutase compare
IAI47_03610 -0.7 -1.9 YqgE/AlgH family protein compare
IAI47_12150 -0.7 -4.2 flagellar hook protein FlgE compare
IAI47_15215 -0.7 -3.9 acireductone synthase compare
IAI47_08355 -0.6 -1.2 flagellar protein FlhE compare
IAI47_07075 -0.6 -2.6 imidazole glycerol phosphate synthase subunit HisH compare
IAI47_14020 -0.6 -1.6 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
IAI47_03015 -0.6 -2.8 hypothetical protein compare
IAI47_05080 -0.6 -2.2 zinc ribbon domain-containing protein compare
IAI47_10550 -0.6 -1.3 two-component-system connector protein YcgZ compare
IAI47_14145 -0.6 -2.1 hypothetical protein compare
IAI47_00500 -0.6 -3.8 ATP-dependent DNA helicase RecG compare
IAI47_03135 -0.6 -2.7 outer membrane channel protein TolC compare
IAI47_14945 -0.6 -1.2 pyrroline-5-carboxylate reductase compare


Specific Phenotypes

For 2 genes in this experiment

For survival Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 in Pantoea sp. MT58

For survival Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 across organisms