Experiment set5IT004 for Pantoea sp. MT58

Compare to:

Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

200 most detrimental genes:

  gene name fitness t score description  
IAI47_06355 +3.3 19.5 transcriptional regulator LrhA compare
IAI47_02400 +2.3 2.3 YhdT family protein compare
IAI47_06550 +2.0 5.1 hypothetical protein compare
IAI47_18595 +1.9 13.3 endoglucanase compare
IAI47_07930 +1.8 1.5 DUF2158 domain-containing protein compare
IAI47_20625 +1.6 4.4 DUF2946 domain-containing protein compare
IAI47_07475 +1.5 1.6 hypothetical protein compare
IAI47_04705 +1.5 1.1 hypothetical protein compare
IAI47_07005 +1.4 2.9 glycosyltransferase family 4 protein compare
IAI47_08845 +1.4 2.2 cell division topological specificity factor MinE compare
IAI47_08045 +1.3 1.3 NUDIX domain-containing protein compare
IAI47_06940 +1.3 0.7 tyrosine-protein kinase Wzc compare
IAI47_19890 +1.3 2.2 hypothetical protein compare
IAI47_12790 +1.3 1.0 chromosome partition protein MukE compare
IAI47_14730 +1.2 0.7 exodeoxyribonuclease VII small subunit compare
IAI47_00770 +1.2 0.8 general stress protein compare
IAI47_11535 +1.2 2.4 DcrB-related protein compare
IAI47_13700 +1.1 1.9 Tol-Pal system protein TolQ compare
IAI47_00130 +1.1 6.1 LacI family DNA-binding transcriptional regulator compare
IAI47_18550 +1.1 2.0 peptidylprolyl isomerase compare
IAI47_15600 +1.1 1.7 Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD compare
IAI47_05735 +1.1 1.6 hypothetical protein compare
IAI47_21830 +1.1 1.5 hypothetical protein compare
IAI47_14125 +1.1 3.3 hypothetical protein compare
IAI47_13925 +1.0 1.3 tRNA-Met compare
IAI47_03915 +1.0 2.3 RNA pyrophosphohydrolase compare
IAI47_15880 +1.0 1.9 DNA gyrase inhibitor YacG compare
IAI47_12665 +1.0 2.0 ribosome modulation factor compare
IAI47_10100 +1.0 2.1 ABC transporter ATP-binding protein compare
IAI47_16410 +1.0 2.6 YbaK/EbsC family protein compare
IAI47_14390 +1.0 2.0 NfeD family protein compare
IAI47_12800 +0.9 2.4 tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM compare
IAI47_11735 +0.9 1.5 histidinol-phosphatase compare
IAI47_08105 +0.9 1.6 DinI family protein compare
IAI47_08725 +0.9 2.5 hypothetical protein compare
IAI47_06170 +0.9 1.3 YfcL family protein compare
IAI47_07700 +0.9 2.3 EAL domain-containing protein compare
IAI47_21665 +0.9 1.4 DUF333 domain-containing protein compare
IAI47_21080 +0.8 1.6 transposase compare
IAI47_08730 +0.8 2.1 YebO family protein compare
IAI47_09310 +0.8 2.1 YbdD/YjiX family protein compare
IAI47_00125 +0.8 3.5 sugar phosphate isomerase/epimerase compare
IAI47_16445 +0.8 2.2 LysR family transcriptional regulator compare
IAI47_11360 +0.8 2.4 hypothetical protein compare
IAI47_10530 +0.8 3.6 hypothetical protein compare
IAI47_01125 +0.8 3.0 stress response protein AzuC compare
IAI47_10725 +0.8 0.8 DUF1656 domain-containing protein compare
IAI47_08440 +0.8 1.1 crossover junction endodeoxyribonuclease RuvC compare
IAI47_05915 +0.8 2.0 minor capsid protein compare
IAI47_08590 +0.8 0.9 hypothetical protein compare
IAI47_21595 +0.8 4.3 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
IAI47_21880 +0.8 0.5 ParA family protein compare
IAI47_05525 +0.8 0.8 tRNA-Ala compare
IAI47_15070 +0.8 2.8 hypothetical protein compare
IAI47_11635 +0.7 2.0 hypothetical protein compare
IAI47_02840 +0.7 2.2 YraN family protein compare
IAI47_04740 +0.7 1.3 hypothetical protein compare
IAI47_08740 +0.7 2.0 DUF2627 domain-containing protein compare
IAI47_06010 +0.7 2.0 hypothetical protein compare
IAI47_17000 +0.7 4.4 lipoprotein NlpI compare
IAI47_03325 +0.7 2.0 hypothetical protein compare
IAI47_20630 +0.7 2.5 DUF2534 family protein compare
IAI47_03950 +0.7 2.5 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
IAI47_15095 +0.7 2.4 hypothetical protein compare
IAI47_04755 +0.7 1.3 AlpA family transcriptional regulator compare
IAI47_21600 +0.7 1.4 EamA family transporter compare
IAI47_02830 +0.6 1.9 divisome-associated lipoprotein YraP compare
IAI47_19045 +0.6 1.4 two-component-system connector protein YcgZ compare
IAI47_11600 +0.6 1.7 protein of avirulence locus ImpE compare
IAI47_14965 +0.6 0.7 hypothetical protein compare
IAI47_13690 +0.6 0.3 cell envelope integrity protein TolA compare
IAI47_06690 +0.6 2.1 iron ABC transporter permease compare
IAI47_21290 +0.6 1.8 alpha/beta hydrolase compare
IAI47_12740 +0.6 1.8 aliphatic sulfonates ABC transporter ATP-binding protein compare
IAI47_07450 +0.6 1.5 winged helix-turn-helix domain-containing protein compare
IAI47_05680 +0.6 1.8 hypothetical protein compare
IAI47_04195 +0.6 2.1 DUF3561 family protein compare
IAI47_18250 +0.6 2.6 transcription/translation regulatory transformer protein RfaH compare
IAI47_00735 +0.6 0.5 protein-export chaperone SecB compare
IAI47_08815 +0.6 1.6 hypothetical protein compare
IAI47_14365 +0.6 1.6 ABC transporter ATP-binding protein compare
IAI47_00875 +0.6 0.7 met regulon transcriptional regulator MetJ compare
IAI47_12330 +0.6 1.7 DUF3261 domain-containing protein compare
IAI47_06395 +0.6 0.5 NADH-quinone oxidoreductase subunit NuoI compare
IAI47_16035 +0.6 2.7 thiamine/thiamine pyrophosphate ABC transporter permease ThiP compare
IAI47_13805 +0.6 2.5 5-oxoprolinase subunit PxpB compare
IAI47_03450 +0.6 2.4 ferritin-like domain-containing protein compare
IAI47_07620 +0.6 2.4 FAD-binding oxidoreductase compare
IAI47_01535 +0.6 1.9 16S rRNA (guanine(966)-N(2))-methyltransferase compare
IAI47_13065 +0.6 0.9 DUF1418 family protein compare
IAI47_07250 +0.6 1.5 tRNA-Asn compare
IAI47_18315 +0.6 2.9 HTH-type transcriptional regulator MetR compare
IAI47_05885 +0.6 2.0 hypothetical protein compare
IAI47_02095 +0.6 1.5 bacterioferritin-associated ferredoxin compare
IAI47_15025 +0.6 1.2 transcriptional regulator LldR compare
IAI47_11875 +0.6 2.3 DUF883 family protein compare
IAI47_07765 +0.6 2.6 carbon-phosphorus lyase complex subunit PhnI compare
IAI47_14325 +0.6 0.9 ribosome-associated protein YbcJ compare
IAI47_15105 +0.6 1.6 hypothetical protein compare
IAI47_12270 +0.6 1.6 YceK/YidQ family lipoprotein compare
IAI47_10255 +0.5 1.7 isochorismatase family protein compare
IAI47_07545 +0.5 3.6 integrase arm-type DNA-binding domain-containing protein compare
IAI47_07920 +0.5 1.3 hypothetical protein compare
IAI47_12640 +0.5 2.7 cell division inhibitor SulA compare
IAI47_07080 +0.5 2.7 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
IAI47_17285 +0.5 1.1 entericidin A/B family lipoprotein compare
IAI47_11825 +0.5 3.1 membrane-bound lytic murein transglycosylase EmtA compare
IAI47_20905 +0.5 1.6 PTS transporter subunit EIIB compare
IAI47_12410 +0.5 1.6 MarR family transcriptional regulator compare
IAI47_21610 +0.5 2.9 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
IAI47_18925 +0.5 2.0 LysR family transcriptional regulator compare
IAI47_12925 +0.5 1.2 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI47_20155 +0.5 1.6 molybdate ABC transporter substrate-binding protein compare
IAI47_19785 +0.5 1.3 DUF1232 domain-containing protein compare
IAI47_01840 +0.5 1.7 ribosome-associated heat shock protein Hsp15 compare
IAI47_10940 +0.5 2.1 glutathione peroxidase compare
IAI47_20055 +0.5 1.8 non-canonical purine NTP pyrophosphatase compare
IAI47_07880 +0.5 1.4 hypothetical protein compare
IAI47_14630 +0.5 1.3 helix-hairpin-helix domain-containing protein compare
IAI47_09195 +0.5 1.8 PHP domain-containing protein compare
IAI47_11545 +0.5 1.2 hypothetical protein compare
IAI47_19740 +0.5 1.9 anti-sigma factor compare
IAI47_14275 +0.5 1.9 GPW/gp25 family protein compare
IAI47_10245 +0.5 1.8 NAD(P)-dependent oxidoreductase compare
IAI47_17415 +0.5 1.5 DUF3304 domain-containing protein compare
IAI47_00290 +0.5 1.7 F0F1 ATP synthase subunit I compare
IAI47_03195 +0.5 1.0 cell division protein FtsP compare
IAI47_08565 +0.5 2.0 phage tail protein I compare
IAI47_11630 +0.5 1.4 hypothetical protein compare
IAI47_08080 +0.5 1.1 hypothetical protein compare
IAI47_16015 +0.5 1.5 3-isopropylmalate dehydratase small subunit compare
IAI47_08075 +0.5 1.4 hypothetical protein compare
IAI47_02505 +0.5 1.0 DUF1471 domain-containing protein compare
IAI47_17565 +0.5 1.6 N-acetylglucosamine kinase compare
IAI47_21720 +0.5 2.1 efflux RND transporter periplasmic adaptor subunit compare
IAI47_01715 +0.5 1.7 malonate decarboxylase holo-ACP synthase compare
IAI47_08615 +0.5 1.1 phage baseplate assembly protein V compare
IAI47_20945 +0.5 1.4 hypothetical protein compare
IAI47_10215 +0.5 1.9 pyrroloquinoline-quinone synthase PqqC compare
IAI47_06030 +0.5 1.2 hypothetical protein compare
IAI47_05590 +0.5 2.2 MFS transporter compare
IAI47_00910 +0.5 2.1 acetylglutamate kinase compare
IAI47_12310 +0.5 2.5 beta-ketoacyl-ACP synthase compare
IAI47_05325 +0.5 1.0 DUF1471 domain-containing protein compare
IAI47_20260 +0.5 2.1 GFA family protein compare
IAI47_05130 +0.5 1.7 DNA-binding protein compare
IAI47_08155 +0.5 2.2 HNH endonuclease compare
IAI47_10120 +0.5 1.7 ATP-binding protein compare
IAI47_14675 +0.5 2.8 muropeptide MFS transporter AmpG compare
IAI47_05145 +0.5 2.1 tellurite resistance methyltransferase TehB compare
IAI47_10590 +0.5 1.2 translesion error-prone DNA polymerase V autoproteolytic subunit compare
IAI47_08670 +0.5 1.3 DUF1272 domain-containing protein compare
IAI47_17775 +0.5 2.5 YjcB family protein compare
IAI47_05400 +0.5 1.6 sulfate/thiosulfate ABC transporter ATP-binding protein CysA compare
IAI47_13255 +0.5 1.6 imidazolonepropionase compare
IAI47_04060 +0.5 1.6 YqcC family protein compare
IAI47_21155 +0.5 1.0 IS6 family transposase compare
IAI47_17800 +0.5 1.8 AraC family transcriptional regulator compare
IAI47_07495 +0.5 1.9 hypothetical protein compare
IAI47_09470 +0.5 1.5 hypothetical protein compare
IAI47_20460 +0.5 2.2 TIM barrel protein compare
IAI47_09655 +0.5 1.8 M20 family metallopeptidase compare
IAI47_16650 +0.5 1.7 hypothetical protein compare
IAI47_06785 +0.5 1.8 GNAT family N-acetyltransferase compare
IAI47_21520 +0.5 1.7 YgdI/YgdR family lipoprotein compare
IAI47_07590 +0.4 2.0 haloacid dehalogenase type II compare
IAI47_07195 +0.4 1.6 PhnD/SsuA/transferrin family substrate-binding protein compare
IAI47_07120 +0.4 2.1 gamma-glutamyl-gamma-aminobutyrate hydrolase compare
IAI47_07095 +0.4 2.1 ATP phosphoribosyltransferase compare
IAI47_16950 +0.4 1.0 GIY-YIG nuclease family protein compare
IAI47_12670 +0.4 2.2 membrane integrity-associated transporter subunit PqiC compare
IAI47_06000 +0.4 2.0 hypothetical protein compare
IAI47_19125 +0.4 1.7 hypothetical protein compare
IAI47_10165 +0.4 1.6 PTS sugar transporter subunit IIA compare
IAI47_12195 +0.4 1.4 DUF480 domain-containing protein compare
IAI47_09575 +0.4 1.9 universal stress protein UspE compare
IAI47_19845 +0.4 1.8 VIT family protein compare
IAI47_20015 +0.4 1.8 MsnO8 family LLM class oxidoreductase compare
IAI47_15595 +0.4 0.5 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
IAI47_19025 +0.4 1.9 LacI family DNA-binding transcriptional regulator compare
IAI47_21835 +0.4 2.3 N-acetyltransferase compare
IAI47_09610 +0.4 2.2 Tar ligand binding domain-containing protein compare
IAI47_19680 +0.4 2.2 hypothetical protein compare
IAI47_06005 +0.4 1.6 translation initiation factor IF-2 compare
IAI47_11520 +0.4 1.2 type VI secretion system tip protein VgrG compare
IAI47_03640 +0.4 2.8 glycosyltransferase compare
IAI47_18375 +0.4 2.0 EamA family transporter RarD compare
IAI47_20115 +0.4 2.0 DUF1090 domain-containing protein compare
IAI47_11015 +0.4 1.7 5-dehydro-4-deoxy-D-glucuronate isomerase compare
IAI47_04935 +0.4 1.8 HAMP domain-containing histidine kinase compare
IAI47_11660 +0.4 2.5 type VI secretion system contractile sheath large subunit compare
IAI47_21180 +0.4 0.9 IS6 family transposase compare
IAI47_13120 +0.4 1.5 glutathione ABC transporter permease GsiC compare
IAI47_18990 +0.4 2.1 MFS transporter compare
IAI47_08635 +0.4 1.1 multidrug/spermidine efflux SMR transporter subunit MdtI compare
IAI47_10715 +0.4 1.9 outer membrane lipoprotein SlyB compare
IAI47_12985 +0.4 1.2 heavy metal-binding domain-containing protein compare
IAI47_10930 +0.4 1.8 C40 family peptidase compare
IAI47_11990 +0.4 1.8 alpha/beta hydrolase compare
IAI47_01655 +0.4 1.4 gluconokinase compare


Specific Phenotypes

For 2 genes in this experiment

For survival Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 in Pantoea sp. MT58

For survival Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 across organisms