Experiment set5IT004 for Cupriavidus basilensis FW507-4G11

Compare to:

R2A

200 most important genes:

  gene name fitness t score description  
RR42_RS11770 -3.2 -2.5 cyclase compare
RR42_RS00715 -3.1 -2.1 ferritin compare
RR42_RS04205 -2.6 -3.4 glycine cleavage system regulatory protein compare
RR42_RS21220 -2.5 -2.7 iron transporter FeoB compare
RR42_RS15740 -2.0 -2.6 hypothetical protein compare
RR42_RS07555 -2.0 -2.9 potassium transporter Kup compare
RR42_RS19005 -2.0 -6.4 3-dehydroquinate synthase compare
RR42_RS17355 -1.9 -1.3 hypothetical protein compare
RR42_RS12925 -1.9 -2.6 ATPase compare
RR42_RS05955 -1.8 -1.4 hypothetical protein compare
RR42_RS22230 -1.8 -2.3 hypothetical protein compare
RR42_RS20570 -1.7 -1.1 biopolymer transporter ExbD compare
RR42_RS06095 -1.7 -4.4 hypothetical protein compare
RR42_RS28885 -1.7 -5.9 membrane protein compare
RR42_RS06240 -1.7 -2.4 tryptophan--tRNA ligase compare
RR42_RS14360 -1.7 -1.6 tryptophan synthase subunit alpha compare
RR42_RS07365 -1.7 -3.0 pyruvate dehydrogenase compare
RR42_RS31330 -1.6 -1.8 LysR family transcriptional regulator compare
RR42_RS02420 -1.6 -1.2 SAM-dependent methyltransferase compare
RR42_RS01920 -1.6 -2.0 protoheme IX farnesyltransferase compare
RR42_RS18850 -1.6 -2.7 preprotein translocase subunit TatC compare
RR42_RS20205 -1.5 -2.5 chromosome partitioning protein compare
RR42_RS33255 -1.4 -1.9 protein-tyrosine phosphatase compare
RR42_RS11580 -1.4 -3.1 hypothetical protein compare
RR42_RS18855 -1.4 -3.2 preprotein translocase compare
RR42_RS13365 -1.4 -1.6 peptidase P60 compare
RR42_RS33690 -1.4 -1.6 phosphate acetyltransferase compare
RR42_RS12590 -1.3 -1.1 50S ribosomal protein L9 compare
RR42_RS01885 -1.3 -2.7 cytochrome C oxidase assembly protein compare
RR42_RS13910 -1.3 -5.5 glutamate racemase compare
RR42_RS31080 -1.3 -2.2 hypothetical protein compare
RR42_RS19635 -1.3 -1.4 hypothetical protein compare
RR42_RS26900 -1.3 -2.1 enoyl-CoA hydratase compare
RR42_RS16240 -1.3 -1.6 cobalamin biosynthesis protein CbiX compare
RR42_RS07380 -1.3 -3.5 dihydrolipoamide dehydrogenase compare
RR42_RS13460 -1.3 -3.6 phosphate transporter permease subunit PtsA compare
RR42_RS09780 -1.3 -2.1 hypothetical protein compare
RR42_RS20925 -1.3 -2.8 Crp/Fnr family transcriptional regulator compare
RR42_RS17720 -1.3 -1.8 sugar kinase compare
RR42_RS05485 -1.2 -2.3 polynucleotide phosphorylase/polyadenylase compare
RR42_RS31530 -1.2 -2.5 histidine kinase compare
RR42_RS20775 -1.2 -1.1 hypothetical protein compare
RR42_RS00360 -1.2 -2.2 Asp/Glu/hydantoin racemase compare
RR42_RS33260 -1.2 -4.5 multidrug MFS transporter compare
RR42_RS26265 -1.2 -1.3 hypothetical protein compare
RR42_RS06485 -1.2 -5.6 chorismate synthase compare
RR42_RS14365 -1.2 -2.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS34395 -1.2 -1.5 hypothetical protein compare
RR42_RS02775 -1.1 -1.5 molecular chaperone SurA compare
RR42_RS12155 -1.1 -2.5 molecular chaperone compare
RR42_RS20005 -1.1 -2.2 hypothetical protein compare
RR42_RS07115 -1.1 -1.1 hypothetical protein compare
RR42_RS02500 -1.1 -1.7 TetR family transcriptional regulator compare
RR42_RS15120 -1.1 -1.6 4-oxalocrotonate tautomerase compare
RR42_RS03080 -1.1 -2.6 recombinase RecA compare
RR42_RS01820 -1.1 -4.4 peptidase S41 compare
RR42_RS15640 -1.1 -1.1 hypothetical protein compare
RR42_RS05290 -1.1 -2.0 ankyrin compare
RR42_RS04475 -1.1 -5.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS07620 -1.1 -3.8 polyhydroxyalkanoate synthesis repressor PhaR compare
RR42_RS15810 -1.1 -2.5 UDP-N-acetylglucosamine 4,6-dehydratase compare
RR42_RS14395 -1.0 -1.7 entericidin compare
RR42_RS34520 -1.0 -0.9 transposase compare
RR42_RS32830 -1.0 -2.5 hypothetical protein compare
RR42_RS16910 -1.0 -1.4 histidine utilization protein HutD compare
RR42_RS20575 -1.0 -1.7 hypothetical protein compare
RR42_RS32670 -1.0 -1.1 phenol hydroxylase compare
RR42_RS21095 -1.0 -2.8 GntR family transcriptional regulator compare
RR42_RS33860 -1.0 -1.7 3-demethylubiquinone-9 3-methyltransferase compare
RR42_RS13835 -1.0 -2.2 hypothetical protein compare
RR42_RS01895 -1.0 -3.3 MFS transporter compare
RR42_RS32085 -1.0 -1.2 hypothetical protein compare
RR42_RS16525 -1.0 -3.2 anti-sigma factor compare
RR42_RS04765 -1.0 -1.9 3-oxoacyl-ACP reductase compare
RR42_RS18815 -1.0 -3.2 cytochrome C compare
RR42_RS02860 -1.0 -1.2 hypothetical protein compare
RR42_RS01880 -1.0 -4.4 cytochrome oxidase subunit I compare
RR42_RS07385 -1.0 -1.7 Phasin (PHA-granule associated protein) compare
RR42_RS28005 -1.0 -2.1 phosphonate/organophosphate ester transporter subunit compare
RR42_RS01085 -0.9 -4.4 chemotaxis protein CheY compare
RR42_RS05860 -0.9 -3.2 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS19695 -0.9 -1.8 cytochrome C protein compare
RR42_RS04700 -0.9 -1.0 ribonuclease G compare
RR42_RS08110 -0.9 -1.7 hypothetical protein compare
RR42_RS12550 -0.9 -2.4 hypothetical protein compare
RR42_RS15970 -0.9 -1.2 lipoprotein compare
RR42_RS04180 -0.9 -1.2 methyltransferase compare
RR42_RS04350 -0.9 -3.1 ABC transporter ATP-binding protein compare
RR42_RS18520 -0.9 -2.1 hypothetical protein compare
RR42_RS08025 -0.9 -1.2 phage Gp37Gp68 compare
RR42_RS33660 -0.9 -2.7 dihydrofolate reductase compare
RR42_RS04255 -0.9 -1.8 chemotaxis protein CheW compare
RR42_RS03095 -0.9 -1.0 succinyl-CoA synthetase subunit beta compare
RR42_RS06325 -0.9 -1.2 serine O-acetyltransferase compare
RR42_RS13060 -0.9 -3.1 23S rRNA methyltransferase compare
RR42_RS30940 -0.9 -3.8 cobalt-zinc-cadmium resistance protein compare
RR42_RS09260 -0.9 -4.1 TetR family transcriptional regulator compare
RR42_RS35975 -0.9 -1.7 pilus assembly protein TadC compare
RR42_RS33815 -0.9 -1.0 isochorismatase compare
RR42_RS04850 -0.8 -1.6 hypothetical protein compare
RR42_RS13190 -0.8 -2.6 outer membrane metallopeptidase lipoprotein nlpD compare
RR42_RS36450 -0.8 -1.0 acyl dehydratase compare
RR42_RS03365 -0.8 -2.2 fructose ABC transporter, permease component (FrcC) (from data) compare
RR42_RS07180 -0.8 -2.0 hypothetical protein compare
RR42_RS13020 -0.8 -1.8 peptidase A8 compare
RR42_RS04535 -0.8 -2.0 cysteine synthase compare
RR42_RS33650 -0.8 -2.0 IclR family transcriptional regulator compare
RR42_RS29490 -0.8 -1.8 toxin HipA compare
RR42_RS36010 -0.8 -2.0 peptidase compare
RR42_RS17685 -0.8 -4.0 alkyl hydroperoxide reductase compare
RR42_RS16125 -0.8 -1.7 Cob(I)yrinic acid a,c-diamide adenosyltransferase compare
RR42_RS01910 -0.8 -3.3 cytochrome C oxidase subunit I compare
RR42_RS18420 -0.8 -4.2 hypothetical protein compare
RR42_RS30945 -0.8 -3.2 cytochrome C peroxidase compare
RR42_RS22345 -0.8 -3.0 UDP-N-acetylmuramate--alanine ligase compare
RR42_RS01925 -0.8 -4.6 photosynthetic protein synthase I compare
RR42_RS17620 -0.8 -3.5 phosphatidylglycerophosphatase compare
RR42_RS11415 -0.8 -2.1 hypothetical protein compare
RR42_RS12615 -0.8 -1.1 LexA family transcriptional regulator compare
RR42_RS11655 -0.8 -1.2 heat-shock protein Hsp20 compare
RR42_RS34325 -0.8 -2.6 hypothetical protein compare
RR42_RS00955 -0.8 -3.0 hydroxymethylglutaryl-CoA lyase compare
RR42_RS24040 -0.8 -2.9 hypothetical protein compare
RR42_RS32545 -0.8 -2.7 sulfonate ABC transporter ATP-binding protein compare
RR42_RS31960 -0.8 -1.4 biphenyl 2,3-dioxygenase compare
RR42_RS25590 -0.8 -2.2 glucose 1-dehydrogenase compare
RR42_RS15420 -0.8 -2.7 hypothetical protein compare
RR42_RS16685 -0.8 -1.4 tRNA-Leu compare
RR42_RS17865 -0.8 -3.1 N-acetyl-anhydromuranmyl-L-alanine amidase compare
RR42_RS13305 -0.8 -0.9 hypothetical protein compare
RR42_RS12040 -0.8 -4.3 MFS transporter compare
RR42_RS27090 -0.8 -1.7 chemotaxis protein CheV compare
RR42_RS30765 -0.8 -1.0 tRNA-Arg compare
RR42_RS29790 -0.7 -1.8 hypothetical protein compare
RR42_RS02850 -0.7 -1.7 phoH-like protein compare
RR42_RS21605 -0.7 -1.4 S-adenosylhomocysteine hydrolase compare
RR42_RS18270 -0.7 -1.7 murein transglycosylase compare
RR42_RS12015 -0.7 -1.2 dihydrolipoamide acyltransferase compare
RR42_RS08945 -0.7 -0.7 hypothetical protein compare
RR42_RS30340 -0.7 -1.3 ABC transporter permease compare
RR42_RS07605 -0.7 -2.8 poly-beta-hydroxybutyrate polymerase compare
RR42_RS21955 -0.7 -1.1 hypothetical protein compare
RR42_RS27160 -0.7 -2.1 acetyl-CoA acetyltransferase compare
RR42_RS23460 -0.7 -1.6 alpha/beta hydrolase compare
RR42_RS21755 -0.7 -1.6 shikimate dehydrogenase compare
RR42_RS26050 -0.7 -2.4 hypothetical protein compare
RR42_RS06890 -0.7 -0.7 hypothetical protein compare
RR42_RS33250 -0.7 -3.7 tyrosine protein kinase compare
RR42_RS01385 -0.7 -1.2 5,10-methylenetetrahydrofolate reductase compare
RR42_RS34680 -0.7 -1.2 short-chain dehydrogenase compare
RR42_RS37135 -0.7 -1.4 cold-shock protein compare
RR42_RS02810 -0.7 -1.0 acyl-phosphate glycerol 3-phosphate acyltransferase compare
RR42_RS02555 -0.7 -1.8 transcriptional regulator compare
RR42_RS02225 -0.7 -2.2 ABC transporter substrate-binding protein compare
RR42_RS19085 -0.7 -0.6 cytochrome C biogenesis protein ResB compare
RR42_RS13465 -0.7 -2.1 phosphate transporter permease subunit PstC compare
RR42_RS07360 -0.7 -1.6 ATPase compare
RR42_RS33240 -0.7 -4.6 GDP-L-fucose synthase compare
RR42_RS13240 -0.7 -2.7 mannosyltransferase compare
RR42_RS34440 -0.7 -1.8 hypothetical protein compare
RR42_RS13800 -0.7 -3.2 formyltetrahydrofolate deformylase compare
RR42_RS28695 -0.7 -1.2 hypothetical protein compare
RR42_RS19900 -0.7 -1.1 MerR family transcriptional regulator compare
RR42_RS09300 -0.7 -1.1 aromatic ring-opening dioxygenase LigB compare
RR42_RS30950 -0.7 -4.8 cation transporter compare
RR42_RS17230 -0.7 -2.5 phosphoserine phosphatase compare
RR42_RS10290 -0.7 -2.3 hypothetical protein compare
RR42_RS13125 -0.7 -2.2 pyrrolo-quinoline quinone compare
RR42_RS34815 -0.7 -2.7 diguanylate cyclase compare
RR42_RS23040 -0.7 -1.3 hypothetical protein compare
RR42_RS00545 -0.7 -2.4 transglutaminase compare
RR42_RS17375 -0.7 -0.9 hypothetical protein compare
RR42_RS13540 -0.7 -0.9 acyl-CoA dehydrogenase compare
RR42_RS14845 -0.7 -1.2 MarR family transcriptional regulator compare
RR42_RS26450 -0.7 -2.1 histidinol dehydrogenase compare
RR42_RS17645 -0.7 -2.7 shikimate dehydrogenase compare
RR42_RS08855 -0.7 -0.9 hypothetical protein compare
RR42_RS16620 -0.6 -1.8 hypothetical protein compare
RR42_RS26220 -0.6 -0.9 citrate lyase subunit beta compare
RR42_RS29610 -0.6 -0.7 cytochrome C2 compare
RR42_RS16460 -0.6 -1.3 cupin compare
RR42_RS19010 -0.6 -2.8 shikimate kinase compare
RR42_RS01970 -0.6 -3.7 maleylacetoacetate isomerase compare
RR42_RS21745 -0.6 -2.3 hypothetical protein compare
RR42_RS18305 -0.6 -1.7 anthranilate phosphoribosyltransferase compare
RR42_RS13370 -0.6 -1.9 microcin ABC transporter ATP-binding protein compare
RR42_RS30835 -0.6 -2.3 hypothetical protein compare
RR42_RS23595 -0.6 -1.9 dTDP-4-dehydrorhamnose 3,5-epimerase compare
RR42_RS37115 -0.6 -1.3 hypothetical protein compare
RR42_RS14075 -0.6 -3.2 anti-sigma factor compare
RR42_RS27790 -0.6 -1.6 LuxR family transcriptional regulator compare
RR42_RS28145 -0.6 -1.8 LysR family transcriptional regulator compare
RR42_RS23550 -0.6 -2.4 flagellar export protein FliJ compare
RR42_RS19560 -0.6 -1.8 hypothetical protein compare
RR42_RS23565 -0.6 -0.5 flagellar motor switch protein G compare
RR42_RS26405 -0.6 -1.9 hypothetical protein compare
RR42_RS23540 -0.6 -2.0 alpha-ketoglutarate-dependent dioxygenase compare
RR42_RS17880 -0.6 -0.6 hypothetical protein compare
RR42_RS20440 -0.6 -0.6 histidine kinase compare
RR42_RS18020 -0.6 -1.3 ornithine acetyltransferase compare


Specific Phenotypes

None in this experiment

For Cupriavidus basilensis FW507-4G11 in r2a experiments